GET /api/tool/?format=api&ordering=collection
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 207,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=20&ordering=collection",
    "previous": null,
    "results": [
        {
            "id": 1,
            "name": "VirHostnet",
            "description": "Virus-Host Network is a knowledge-base system dedicated to the curation, the integration, the management and the analysis of virus-host molecular (mainly protein-protein) interaction networks as well as their functional annotation (molecular functions, cellular pathways, protein domains). VirHostNet contains high quality and up-to-date information gathered and curated from public databases.",
            "homepage": "http://virhostnet.prabi.fr/",
            "biotoolsID": "virhostnet",
            "biotoolsCURIE": "biotools:virhostnet",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web service"
            ],
            "collection": [
                "COVID-19",
                "PRABI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_3957",
                "http://edamontology.org/topic_0781",
                "http://edamontology.org/topic_3324"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "VirHostNet Support",
                    "email": "vincent.navratil@univ-lyon1.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9974-1877",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Head of the prabi-amsb bioinformatics core facility (http://amsb.prabi.fr)"
                }
            ],
            "tool_licence": "Not licensed",
            "documentation": "https://pbil.univ-lyon1.fr/redmine/projects/virhostscape/wiki",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-12-08T10:41:55Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 1,
            "name": "VirHostnet",
            "description": "Virus-Host Network is a knowledge-base system dedicated to the curation, the integration, the management and the analysis of virus-host molecular (mainly protein-protein) interaction networks as well as their functional annotation (molecular functions, cellular pathways, protein domains). VirHostNet contains high quality and up-to-date information gathered and curated from public databases.",
            "homepage": "http://virhostnet.prabi.fr/",
            "biotoolsID": "virhostnet",
            "biotoolsCURIE": "biotools:virhostnet",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web service"
            ],
            "collection": [
                "COVID-19",
                "PRABI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_3957",
                "http://edamontology.org/topic_0781",
                "http://edamontology.org/topic_3324"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "VirHostNet Support",
                    "email": "vincent.navratil@univ-lyon1.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9974-1877",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Head of the prabi-amsb bioinformatics core facility (http://amsb.prabi.fr)"
                }
            ],
            "tool_licence": "Not licensed",
            "documentation": "https://pbil.univ-lyon1.fr/redmine/projects/virhostscape/wiki",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-12-08T10:41:55Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 4,
            "name": "Coffee Genome Hub",
            "description": "The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.",
            "homepage": "https://coffee-genome-hub.southgreen.fr/",
            "biotoolsID": "Coffee_Genome_Hub",
            "biotoolsCURIE": "biotools:Coffee_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/nar/gku1108"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Alexis Dereeper",
                    "email": "alexis.dereeper@ird.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaetan Droc",
                    "email": "droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "http://coffee-genome.org/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:58:58.975865Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 3,
            "name": "Rice Genome Hub",
            "description": "An open source database(s) for genetics, genomics and functional research in rice species",
            "homepage": "https://rice-genome-hub.southgreen.fr/",
            "biotoolsID": "Rice_Genome_Hub",
            "biotoolsCURIE": "biotools:Rice_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_3366",
                "http://edamontology.org/topic_0780"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "manuel.ruiz@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8153-276X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "christine.tranchant@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6934-1215",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CRP Rice",
                    "email": null,
                    "url": "http://ricecrp.org/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 102,
            "name": "Sugarcane Genome Hub",
            "description": "The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources.",
            "homepage": "https://sugarcane-genome.cirad.fr/",
            "biotoolsID": "Sugarcane_Genome_Hub",
            "biotoolsCURIE": "biotools:Sugarcane_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Olivier Garsmeur",
                    "email": "olivier.garsmeur@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8869-3689",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaetan Droc",
                    "email": "droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 120,
            "name": "Cocoa Genome Hub",
            "description": "The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.",
            "homepage": "https://cocoa-genome-hub.southgreen.fr/",
            "biotoolsID": "Cocoa_Genome_Hub",
            "biotoolsCURIE": "biotools:Cocoa_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0203"
            ],
            "primary_publication": [
                "10.1186/s12864-017-4120-9"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": "https://www.cirad.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "ANR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Argout",
                    "email": "xavier.argout@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-0100-5511",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Droc",
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Lanaud",
                    "email": "claire.lanaud@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6411-7310",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "http://api.tripal.info/api/tripal/3.x",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:43.154205Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 36,
            "name": "Banana Genome Hub",
            "description": "A Next-Generation Information System for Musa genomics",
            "homepage": "https://banana-genome-hub.southgreen.fr/",
            "biotoolsID": "Banana_Genome_Hub",
            "biotoolsCURIE": "biotools:Banana_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "ANR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaëtan Droc",
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Mathieu Rouard",
                    "email": "m.rouard@cgiar.org",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioversity International",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://banana-genome-hub.southgreen.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:38.690746Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 82,
            "name": "PhyML",
            "description": "Phylogenetic estimation software using Maximum Likelihood",
            "homepage": "https://www.atgc-montpellier.fr/phyml/",
            "biotoolsID": "phyml",
            "biotoolsCURIE": "biotools:phyml",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "PhyML",
                "galaxyPasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/sysbio/syq010"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Maintainer",
                        "Support",
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Stephane Guindon",
                    "email": "guindon@lirmm.fr",
                    "url": "http://stephaneguindon.github.io/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Maintainer",
                        "Support"
                    ],
                    "name": "Stephane Guindon",
                    "email": "guindon@lirmm.fr",
                    "url": "https://stephaneguindon.github.io/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "LIRMM",
                    "email": null,
                    "url": "https://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://github.com/stephaneguindon/phyml/blob/master/doc/phyml-manual.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:34:19.190685Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 84,
            "name": "IMGT, the international ImMunoGeneTics information system",
            "description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
            "homepage": "http://www.imgt.org/",
            "biotoolsID": "imgt",
            "biotoolsCURIE": "biotools:imgt",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3948",
                "http://edamontology.org/topic_3930"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.imgt.org/IMGTinformation/Contact.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/FAQ/",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:34:08.902650Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 86,
            "name": "BIII (BioImage Informatics Index, biii.eu)",
            "description": "BIII (BioImage Informatics Index, biii.eu) is a registry of software tools, image databases for benchmarking, and training materials for bioimage analysis. Software tools are organized as either a full protocol of analysis (workflow), a specific component to construct a workflow, or a software platform or library (collection). They are described using EDAM-bioimaging. All entries are exposed following FAIR principles and accessible for other usage with ODC-By v1.0 license.",
            "homepage": "https://biii.eu",
            "biotoolsID": "BISE",
            "biotoolsCURIE": "biotools:BISE",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "NEUBIAS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3298",
                "http://edamontology.org/topic_3382"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Matúš Kalaš",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-1509-4981",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Coordinator of the EDAM-bioimaging ontology development"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Kota Miura",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6926-191X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Main technical support and one of the founders of the project"
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Taggers",
                    "email": null,
                    "url": "http://biii.eu/show-taggers",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "People curating tools"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chong Zhang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Co-leader of the developement"
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NEUBIAS Network of Bioimage Analysts",
                    "email": null,
                    "url": "https://neubias.eu",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "COST action having supported the creation and curation of this database"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Leandro Scholz",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-2411-0429",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Worked on the curation instructions"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Perrine Paul-Gilloteaux",
                    "email": "perrine.paul-gilloteaux@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4822-165X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Leader of the project"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alban Gaignard",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3597-8557",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Developed the core ontology (data model) and enabled reuse of the content through W3C standards"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Florian Levet",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4009-6225",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Development of Python scripts"
                }
            ],
            "tool_licence": "Other",
            "documentation": "https://github.com/NeuBIAS/bise/wiki",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-03-26T15:45:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 83,
            "name": "Phylogeny.fr",
            "description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
            "homepage": "http://www.phylogeny.fr/",
            "biotoolsID": "phylogeny.fr",
            "biotoolsCURIE": "biotools:phylogeny.fr",
            "tool_type": [
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293"
            ],
            "primary_publication": [
                "10.1093/nar/gkn180"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IGS",
                    "email": null,
                    "url": "http://www.igs.cnrs-mrs.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Alexis Dereeper",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Valentin Guignon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.phylogeny.fr/contacts.cgi",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.phylogeny.fr/documentation.cgi",
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:33:44.667229Z",
            "teams": [
                "ATGC",
                "PACA-Bioinfo"
            ],
            "source_repository": null
        },
        {
            "id": 3,
            "name": "Rice Genome Hub",
            "description": "An open source database(s) for genetics, genomics and functional research in rice species",
            "homepage": "https://rice-genome-hub.southgreen.fr/",
            "biotoolsID": "Rice_Genome_Hub",
            "biotoolsCURIE": "biotools:Rice_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_3366",
                "http://edamontology.org/topic_0780"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "manuel.ruiz@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8153-276X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "christine.tranchant@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6934-1215",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CRP Rice",
                    "email": null,
                    "url": "http://ricecrp.org/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 8,
            "name": "Plant DataDiscovery",
            "description": "The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world.\n\nThe web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
            "biotoolsID": "Plant_DataDiscovery",
            "biotoolsCURIE": "biotools:Plant_DataDiscovery",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [
                "10.1186/s13059-018-1491-4"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/data-discovery/about",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-12-12T16:19:23.574076Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 81,
            "name": "MatrixDB",
            "description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
            "homepage": "http://matrixdb.univ-lyon1.fr/",
            "biotoolsID": "matrixdb",
            "biotoolsCURIE": "biotools:matrixdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "MatrixDB Support",
                    "email": "sylvie.ricard-blum@univ-lyon1.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9263-1851",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
                }
            ],
            "tool_licence": null,
            "documentation": "http://matrixdb.univ-lyon1.fr/",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:29:32.794189Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 69,
            "name": "WheatIS",
            "description": "This project aims at building an International Wheat Information System (WheatIS) to support the wheat research community. The main objective is to provide a single-access web based system to access to the available data resources and bioinformatics tools. The web portal indexes and makes findable any kind of data from wheat related species. \nThe WheatIS search is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/wheatis/",
            "biotoolsID": "WheatIS",
            "biotoolsCURIE": "biotools:WheatIS",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [
                "10.1186/s13059-018-1491-4"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inra.fr/wheatis/about",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-15T15:54:13Z",
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": null
        },
        {
            "id": 85,
            "name": "ARIA",
            "description": "A software for automated NOE assignment and NMR structure calculation.",
            "homepage": "http://aria.pasteur.fr/",
            "biotoolsID": "aria",
            "biotoolsCURIE": "biotools:aria",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Institut Pasteur",
                "FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_1317",
                "http://edamontology.org/topic_0593",
                "http://edamontology.org/topic_0176",
                "http://edamontology.org/topic_3306",
                "http://edamontology.org/topic_3332",
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btl589"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Michael Nilges",
                    "email": "michael.nilges@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Bardiaux",
                    "email": "benjamin.bardiaux@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "http://aria.pasteur.fr/contact-info",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "http://aria.pasteur.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:37:34.670261Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 36,
            "name": "Banana Genome Hub",
            "description": "A Next-Generation Information System for Musa genomics",
            "homepage": "https://banana-genome-hub.southgreen.fr/",
            "biotoolsID": "Banana_Genome_Hub",
            "biotoolsCURIE": "biotools:Banana_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "ANR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaëtan Droc",
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Mathieu Rouard",
                    "email": "m.rouard@cgiar.org",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioversity International",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://banana-genome-hub.southgreen.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:38.690746Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 68,
            "name": "NORINE",
            "description": "NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis.",
            "homepage": "http://norine.univ-lille.fr/norine/",
            "biotoolsID": "NORINE",
            "biotoolsCURIE": "biotools:NORINE",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3332",
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [
                "10.1093/nar/gkz1000"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Norine team",
                    "email": "norine@univ-lille.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-NC-SA-4.0",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-07-21T13:25:21.706482Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 87,
            "name": "Genetic and Genomic Information System (GnpIS)",
            "description": "A multispecies integrative information system dedicated to plant and fungi pests.. It allows researchers to access genetic, phenotypic and genomic data. It is used by both large international projects and the French National Research Institute for Agriculture, Food and Environment",
            "homepage": "https://urgi.versailles.inrae.fr/gnpis",
            "biotoolsID": "gnpis",
            "biotoolsCURIE": "biotools:gnpis",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_0625"
            ],
            "primary_publication": [
                "10.1007/978-1-4939-6658-5_5",
                "10.3835/plantgenome2015.06.0038",
                "10.1093/database/bat058"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "urgi-contact@versailles.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": "https://urgi.versailles.inra.fr/gnpis/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:43:38.738005Z",
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": null
        },
        {
            "id": 88,
            "name": "MetExplore",
            "description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
            "homepage": "http://www.metexplore.fr/",
            "biotoolsID": "metexplore",
            "biotoolsCURIE": "biotools:metexplore",
            "tool_type": [
                "Web service",
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "EBI Training Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [
                "10.1093/nar/gky301",
                "10.1093/nar/gkq312"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "ludovic.cottret@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "MetaboHub",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "metexplore@oulouse.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Fabien JOURDAN",
                    "email": "fabien.jourdan@inra.fr",
                    "url": "https://sites.google.com/site/fabienjourdan/",
                    "orcidid": "https://orcid.org/0000-0001-9401-2894",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:46:23.656822Z",
            "teams": [],
            "source_repository": null
        }
    ]
}