GET /api/tool/?format=api&offset=80&ordering=cost
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=100&ordering=cost",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=60&ordering=cost",
    "results": [
        {
            "id": 99,
            "name": "Genomicus-protists",
            "description": "Genomicus-protists is a genome browser that enables users to navigate in protists genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus-protists/",
            "biotoolsID": "Genomicus-protists",
            "biotoolsCURIE": "biotools:Genomicus-protists",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/gks1156"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Roest Crollius",
                    "email": "hrc@ens.fr",
                    "url": "http://www.ibens.ens.fr/?rubrique43",
                    "orcidid": "http://orcid.org/0000-0002-8209-173X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "PB-IBENS"
            ],
            "source_repository": null
        },
        {
            "id": 107,
            "name": "GENOMICUS",
            "description": "Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus/",
            "biotoolsID": "GENOMICUS",
            "biotoolsCURIE": "biotools:GENOMICUS",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btq079",
                "10.1093/nar/gkab1091"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Roest Crollius",
                    "email": "hrc@ens.fr",
                    "url": "http://www.ibens.ens.fr/?rubrique43",
                    "orcidid": "http://orcid.org/0000-0002-8209-173X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "IBENS - DYOGEN Team",
                    "email": null,
                    "url": "http://www.ibens.ens.fr/?rubrique43&lang=en",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "PB-IBENS",
                    "email": null,
                    "url": "https://www.ibens.ens.fr/?rubrique55",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.youtube.com/watch?v=CokUh3fUbGQ",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-03-06T14:10:23.175189Z",
            "teams": [
                "PB-IBENS"
            ],
            "source_repository": null
        },
        {
            "id": 239,
            "name": "ACDtool",
            "description": "Web-server for the generic analysis of large data sets of counts.",
            "homepage": "https://www.igs.cnrs-mrs.fr/acdtool/",
            "biotoolsID": "acdtool",
            "biotoolsCURIE": "biotools:acdtool",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2269"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-10T09:25:24.490675Z",
            "teams": [
                "PACA-Bioinfo"
            ],
            "source_repository": null
        },
        {
            "id": 100,
            "name": "Genomicus-fungi",
            "description": "Genomicus-fungi is a genome browser that enables users to navigate in fungi genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus-fungi/",
            "biotoolsID": "Genomicus-fungi",
            "biotoolsCURIE": "biotools:Genomicus-fungi",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/gks1156"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Roest Crollius",
                    "email": "hrc@ens.fr",
                    "url": "http://www.ibens.ens.fr/?rubrique43",
                    "orcidid": "http://orcid.org/0000-0002-8209-173X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "PB-IBENS"
            ],
            "source_repository": null
        },
        {
            "id": 207,
            "name": "Commet",
            "description": "This software provides a global similarity overview between all datasets of a large metagenomic project.",
            "homepage": "https://colibread.inria.fr/software/commet/",
            "biotoolsID": "commet",
            "biotoolsCURIE": "biotools:commet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1109/BIBM.2014.6999135"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Peterlongo",
                    "email": "pierre.peterlongo@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/pierrepeterlongo/commet/blob/master/doc/commet_user_guide.pdf",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 197,
            "name": "JASS",
            "description": "software package that handles the computation of the joint statistics over sets of selected GWAS results, and the interactive exploration of the results through a web interface.",
            "homepage": "http://statistical-genetics.pages.pasteur.fr/jass/",
            "biotoolsID": "jass",
            "biotoolsCURIE": "biotools:jass",
            "tool_type": [
                "Command-line tool",
                "Web application",
                "Web service"
            ],
            "collection": [
                "Institut Pasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3517",
                "http://edamontology.org/topic_2269",
                "http://edamontology.org/topic_3053"
            ],
            "primary_publication": [
                "10.1093/nargab/lqaa003",
                "10.1101/714832v1"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Carla Lasry",
                    "email": null,
                    "url": "https://research.pasteur.fr/fr/member/carla-lasry/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chunzi Yao",
                    "email": "chunzi.yao@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/chunzi-yao/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Vincent Laville",
                    "email": "vincent.laville@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Bjarni Vilhjalmsson",
                    "email": null,
                    "url": "https://pure.au.dk/portal/en/persons/bjarni-johann-vilhjlmsson(35c047ab-0899-4434-91bb-121e4878ec76).html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Hervé Ménager",
                    "email": "herve.menager@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/search/herve%20menager",
                    "orcidid": "https://orcid.org/0000-0002-7552-1009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Aschard",
                    "email": "hugues.aschard@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/hugues-aschard/",
                    "orcidid": "http://orcid.org/0000-0002-7554-6783",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Hanna Julienne",
                    "email": "hanna.julienne@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/hanna-julienne/",
                    "orcidid": "https://orcid.org/0000-0001-8214-9412",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Vincent Guillemot",
                    "email": "vincent.guillemot@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/vincent-guillemot/",
                    "orcidid": "https://orcid.org/0000-0002-7421-0655",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierre Lechat",
                    "email": "pierre.lechat@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/pierre-lechat/",
                    "orcidid": "https://orcid.org/0000-0003-1050-5582",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://statistical-genetics.pages.pasteur.fr/jass/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:46:08.475046Z",
            "teams": [],
            "source_repository": "https://gitlab.pasteur.fr/statistical-genetics/jass"
        },
        {
            "id": 241,
            "name": "iPPI-DB",
            "description": "IPPI-DB is a database of modulators of protein-protein interactions. It contains exclusively small molecules and therefore no peptides. The data are retrieved from the literature either peer reviewed scientific articles or world patents. A large variety of data is stored within IPPI-DB: structural, pharmacological, binding and activity profile, pharmacokinetic and cytotoxicity when available, as well as some data about the PPI targets themselves.",
            "homepage": "https://ippidb.pasteur.fr",
            "biotoolsID": "ippi-db",
            "biotoolsCURIE": "biotools:ippi-db",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3343"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Olivier Sperandio",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6610-2729",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-01-14T17:37:37Z",
            "teams": [],
            "source_repository": "https://gitlab.pasteur.fr/ippidb/ippidb-web/"
        },
        {
            "id": 274,
            "name": "orsum",
            "description": "A Python package for filtering and comparing enrichment analyses using a simple principle.",
            "homepage": "https://anaconda.org/bioconda/orsum",
            "biotoolsID": "orsum",
            "biotoolsCURIE": "biotools:orsum",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3407"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": "ozan.ozisik@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": "anais.baudot@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-10-29T06:24:51.903827Z",
            "teams": [],
            "source_repository": "https://github.com/ozanozisik/orsum/"
        },
        {
            "id": 58,
            "name": "Crispi",
            "description": "A CRISPR Interactive database.",
            "homepage": "http://crispi.genouest.org/",
            "biotoolsID": "crispi",
            "biotoolsCURIE": "biotools:crispi",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0160"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btp586"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest platform",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genoweb1.irisa.fr/Serveur-GPO/outils/repeatsAnalysis/CRISPR/help/crispri.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:06:25.068541Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 106,
            "name": "Lifemap",
            "description": "Explorer of the entire tree of life. Lifemap allows visualizing the entire NCBI taxonomy on a single page with a deep zoom interface and performing easy search, mrca detection, subtree download, etc.",
            "homepage": "http://lifemap.univ-lyon1.fr",
            "biotoolsID": "Lifemap",
            "biotoolsCURIE": "biotools:Lifemap",
            "tool_type": [
                "Web service",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3050"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [],
            "tool_licence": "CC-BY-NC-4.0",
            "documentation": "http://lifemap.univ-lyon1.fr/help/",
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/damiendevienne/Lifemap"
        },
        {
            "id": 90,
            "name": "FAIDARE",
            "description": "FAIDARE: FAIR Data-finder for Agronomic Research. \nThe purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories.\n\nIt is based on the Breeding API (BrAPI) specifications and facilitates the access to genotype and phenotype datasets for crop and forest plants through an easy to use web interface. It also provides a standard interface that can be accessed programatically through web services.\n\nIt is an extension of the generic DataDiscovery portal, a web portal that allows finding any type of data across several databases through a lightweight keyword based search. FAIDARE offers more detailed search and data retrieval capabilities and it takes advantage of the growing adoption of the BrAPI.",
            "homepage": "https://urgi.versailles.inrae.fr/faidare/",
            "biotoolsID": "faidare",
            "biotoolsCURIE": "biotools:faidare",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Support"
                    ],
                    "name": "URGI support",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/faidare/help",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-09-02T05:04:34.812991Z",
            "teams": [
                "URGI"
            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/faidare"
        },
        {
            "id": 276,
            "name": "ODAMNet",
            "description": "A Python package to study molecular relationship between environmental factors and rare diseases.",
            "homepage": "https://pypi.org/project/ODAMNet/",
            "biotoolsID": "odamnet",
            "biotoolsCURIE": "biotools:odamnet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": "morgane.terezol@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4090-2573",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-0885-7933",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://odamnet.readthedocs.io/en/latest/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:02:02.850639Z",
            "teams": [],
            "source_repository": "https://github.com/MOohTus/ODAMNet"
        },
        {
            "id": 288,
            "name": "MAGNETO",
            "description": "An automated workflow for genome-resolved metagenomics",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto",
            "biotoolsID": "magneto",
            "biotoolsCURIE": "biotools:magneto",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3050"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Samuel Chaffron",
                    "email": "samuel.chaffron@ls2n.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Benjamin Churcheward",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Audrey Bihouée",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Guillaume Fertin",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Hugo Lefeuvre",
                    "email": "hugo.lefeuvre@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-02-24T16:29:20.503951Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto"
        },
        {
            "id": 175,
            "name": "Logol",
            "description": "Pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic).",
            "homepage": "http://logol.genouest.org",
            "biotoolsID": "logol",
            "biotoolsCURIE": "biotools:logol",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0160"
            ],
            "primary_publication": [
                "10.1007/978-3-319-09192-1_4"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=LOGOL",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:34Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 4,
            "name": "Coffee Genome Hub",
            "description": "The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.",
            "homepage": "https://coffee-genome-hub.southgreen.fr/",
            "biotoolsID": "Coffee_Genome_Hub",
            "biotoolsCURIE": "biotools:Coffee_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/nar/gku1108"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Alexis Dereeper",
                    "email": "alexis.dereeper@ird.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaetan Droc",
                    "email": "droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "http://coffee-genome.org/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:58:58.975865Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 97,
            "name": "Ocean Gene Atlas",
            "description": "The Ocean Gene Atlas service provides data mining access to three complementary data objects: gene sequence catalogs (ENA), sample environmental context (PANGAEA), and gene abundances estimates in samples (computed by mapping sequence reads onto gene catalogs).\nUser queries are composed of either a sequence (nucleic or protein), or a hidden Markov model derived from a multiple sequence alignment. Homologs of the user query in the gene catalogs are identified using standard sequence similarity search tools (eg BLAST or HMMER), and their read based estimated abundance are displayed in interactive maps and plots. A phylogenetic tree is also inferred in order to situate the user query within its context of marine environmental homologs as well as known homologs from reference sequences.",
            "homepage": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/",
            "biotoolsID": "Ocean_Gene_Atlas",
            "biotoolsCURIE": "biotools:Ocean_Gene_Atlas",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3387",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3941"
            ],
            "primary_publication": [
                "10.1093/nar/gky376"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "MIO",
                    "email": null,
                    "url": "https://www.mio.osupytheas.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "OCEANOMICS",
                    "email": null,
                    "url": "http://www.oceanomics.eu/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": "ANR-11-BTBR-0008"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "oceangeneatlas@mio.osupytheas.fr",
                    "url": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/credits",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Not licensed",
            "documentation": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/build/pdf/Ocean-Gene-Atlas_User_Manual.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:34.208631Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 282,
            "name": "easy16S",
            "description": "Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.",
            "homepage": "https://easy16s.migale.inrae.fr/",
            "biotoolsID": "easy16s",
            "biotoolsCURIE": "biotools:easy16s",
            "tool_type": [],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [
                "10.21105/joss.06704"
            ],
            "operating_system": [
                "Mac",
                "Windows",
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Cédric Midoux",
                    "email": "cedric.midoux@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-7964-0929",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://easy16s.migale.inrae.fr/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-11T14:36:21.065324Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": "https://doi.org/10.57745/ZN1HXQ"
        },
        {
            "id": 85,
            "name": "ARIA",
            "description": "A software for automated NOE assignment and NMR structure calculation.",
            "homepage": "http://aria.pasteur.fr/",
            "biotoolsID": "aria",
            "biotoolsCURIE": "biotools:aria",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Institut Pasteur",
                "FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_1317",
                "http://edamontology.org/topic_0593",
                "http://edamontology.org/topic_0176",
                "http://edamontology.org/topic_3306",
                "http://edamontology.org/topic_3332",
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btl589"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "http://aria.pasteur.fr/contact-info",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Michael Nilges",
                    "email": "michael.nilges@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Bardiaux",
                    "email": "benjamin.bardiaux@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "http://aria.pasteur.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:37:34.670261Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 135,
            "name": "Askomics",
            "description": "AskOmics is a visual SPARQL query interface supporting both intuitive data integration and querying while shielding the user from most of the technical difficulties underlying RDF and SPARQL",
            "homepage": "https://github.com/askomics",
            "biotoolsID": "askomics",
            "biotoolsCURIE": "biotools:askomics",
            "tool_type": [
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3366"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Olivier Dameron",
                    "email": "olivier.dameron@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Olivier Filangi",
                    "email": "olivier.filangi@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Anthony Bretaudeau",
                    "email": "anthony.bretaudeau@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "https://github.com/askomics/askomics",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2025-06-09T11:52:30.706337Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 240,
            "name": "SMS",
            "description": "Phylogenetic model selection using likelihood-based criteria. SMS stends for Smart Model Selection.",
            "homepage": "http://www.atgc-montpellier.fr/sms/",
            "biotoolsID": "PhyMLSMS",
            "biotoolsCURIE": "biotools:PhyMLSMS",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [
                "PhyML"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_2269"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/download/papers/sms-HowItWorks.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:18.380055Z",
            "teams": [],
            "source_repository": null
        }
    ]
}