HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 207,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=80&ordering=operating_system",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=40&ordering=operating_system",
"results": [
{
"id": 47,
"name": "BYKdb",
"description": "Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.",
"homepage": "http://bykdb.ibcp.fr/BYKdb/",
"biotoolsID": "bykdb",
"biotoolsCURIE": "biotools:bykdb",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact form",
"email": null,
"url": "https://bykdb.ibcp.fr/BYKdb/BYKdbContact",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://bykdb.ibcp.fr/BYKdb/BYKdbHelp",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:08:37.507577Z",
"teams": [],
"source_repository": null
},
{
"id": 154,
"name": "CompPhy",
"description": "Web-based collaborative platform for comparing phylogenies.",
"homepage": "http://www.atgc-montpellier.fr/compphy/",
"biotoolsID": "compphy",
"biotoolsCURIE": "biotools:compphy",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_3056"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact form",
"email": null,
"url": "http://www.atgc-montpellier.fr/compphy/?p=contact",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/compphy/?p=userguide",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:57Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 73,
"name": "mosaic",
"description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
"homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
"biotoolsID": "mosaic",
"biotoolsCURIE": "biotools:mosaic",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3056",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leithen K. M’Gonigle",
"email": "mgonigle@zoology.ubc.ca",
"url": "http://www.zoology.ubc.ca/~fitzjohn",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:20:53.826983Z",
"teams": [],
"source_repository": null
},
{
"id": 22,
"name": "ProDom protein domain database",
"description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
"homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
"biotoolsID": "prodom",
"biotoolsCURIE": "biotools:prodom",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0736"
],
"primary_publication": [
"10.1093/nar/28.1.267"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:21:05.113834Z",
"teams": [],
"source_repository": null
},
{
"id": 88,
"name": "MetExplore",
"description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
"homepage": "http://www.metexplore.fr/",
"biotoolsID": "metexplore",
"biotoolsCURIE": "biotools:metexplore",
"tool_type": [
"Web service",
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019",
"EBI Training Tools"
],
"scientific_topics": [
"http://edamontology.org/topic_0602"
],
"primary_publication": [
"10.1093/nar/gky301",
"10.1093/nar/gkq312"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "ludovic.cottret@inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "MetaboHub",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Support"
],
"name": null,
"email": "metexplore@oulouse.inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Fabien JOURDAN",
"email": "fabien.jourdan@inra.fr",
"url": "https://sites.google.com/site/fabienjourdan/",
"orcidid": "https://orcid.org/0000-0001-9401-2894",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:46:23.656822Z",
"teams": [],
"source_repository": null
},
{
"id": 75,
"name": "NAPP",
"description": "Nucleic Acid Phylogenetic Profile Database: classifies coding and non-coding sequences in a genome according to their pattern of conservation across other genomes.",
"homepage": "http://napp.u-psud.fr/",
"biotoolsID": "napp",
"biotoolsCURIE": "biotools:napp",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_3511",
"http://edamontology.org/topic_0077",
"http://edamontology.org/topic_0097"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "NAPP Support",
"email": "napp.biologie@u-psud.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://rna.igmors.u-psud.fr/NAPP/Help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:05:27.630660Z",
"teams": [],
"source_repository": null
},
{
"id": 48,
"name": "European Hepatitis C virus database (euHCVdb)",
"description": "European Hepatitis C virus database.",
"homepage": "http://euhcvdb.ibcp.fr/euHCVdb/",
"biotoolsID": "euhcvdb",
"biotoolsCURIE": "biotools:euhcvdb",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0781"
],
"primary_publication": [
"10.1093/nar/gkl970"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "https://euhcvdb.ibcp.fr/euHCVdb/jsp/sendMail.jsp",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://euhcvdb.ibcp.fr/euHCVdb/jsp/help.jsp",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T16:04:26.299102Z",
"teams": [],
"source_repository": null
},
{
"id": 120,
"name": "Cocoa Genome Hub",
"description": "The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.",
"homepage": "https://cocoa-genome-hub.southgreen.fr/",
"biotoolsID": "Cocoa_Genome_Hub",
"biotoolsCURIE": "biotools:Cocoa_Genome_Hub",
"tool_type": [
"Database portal"
],
"collection": [
"Genome Hub",
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_3308",
"http://edamontology.org/topic_3810",
"http://edamontology.org/topic_0203"
],
"primary_publication": [
"10.1186/s12864-017-4120-9"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Maintainer"
],
"name": "CIRAD",
"email": null,
"url": "https://www.cirad.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [],
"name": "ANR",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Argout",
"email": "xavier.argout@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-0100-5511",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Droc",
"email": "gaetan.droc@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-1849-1269",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Lanaud",
"email": "claire.lanaud@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-6411-7310",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-2.0",
"documentation": "http://api.tripal.info/api/tripal/3.x",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:43.154205Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 81,
"name": "MatrixDB",
"description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
"homepage": "http://matrixdb.univ-lyon1.fr/",
"biotoolsID": "matrixdb",
"biotoolsCURIE": "biotools:matrixdb",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0078"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "MatrixDB Support",
"email": "sylvie.ricard-blum@univ-lyon1.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-9263-1851",
"gridid": null,
"typeEntity": "Person",
"note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
}
],
"tool_licence": null,
"documentation": "http://matrixdb.univ-lyon1.fr/",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:29:32.794189Z",
"teams": [],
"source_repository": null
},
{
"id": 82,
"name": "PhyML",
"description": "Phylogenetic estimation software using Maximum Likelihood",
"homepage": "https://www.atgc-montpellier.fr/phyml/",
"biotoolsID": "phyml",
"biotoolsCURIE": "biotools:phyml",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019",
"PhyML",
"galaxyPasteur"
],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0091"
],
"primary_publication": [
"10.1093/sysbio/syq010"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Maintainer",
"Support",
"Developer",
"Primary contact"
],
"name": "Stephane Guindon",
"email": "guindon@lirmm.fr",
"url": "http://stephaneguindon.github.io/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact",
"Developer",
"Maintainer",
"Support"
],
"name": "Stephane Guindon",
"email": "guindon@lirmm.fr",
"url": "https://stephaneguindon.github.io/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "LIRMM",
"email": null,
"url": "https://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "GPL-2.0",
"documentation": "https://github.com/stephaneguindon/phyml/blob/master/doc/phyml-manual.pdf",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:34:19.190685Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 1,
"name": "VirHostnet",
"description": "Virus-Host Network is a knowledge-base system dedicated to the curation, the integration, the management and the analysis of virus-host molecular (mainly protein-protein) interaction networks as well as their functional annotation (molecular functions, cellular pathways, protein domains). VirHostNet contains high quality and up-to-date information gathered and curated from public databases.",
"homepage": "http://virhostnet.prabi.fr/",
"biotoolsID": "virhostnet",
"biotoolsCURIE": "biotools:virhostnet",
"tool_type": [
"Database portal",
"Bioinformatics portal",
"Web service"
],
"collection": [
"COVID-19",
"PRABI"
],
"scientific_topics": [
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_3957",
"http://edamontology.org/topic_0781",
"http://edamontology.org/topic_3324"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "VirHostNet Support",
"email": "vincent.navratil@univ-lyon1.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-9974-1877",
"gridid": null,
"typeEntity": "Person",
"note": "Head of the prabi-amsb bioinformatics core facility (http://amsb.prabi.fr)"
}
],
"tool_licence": "Not licensed",
"documentation": "https://pbil.univ-lyon1.fr/redmine/projects/virhostscape/wiki",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-12-08T10:41:55Z",
"teams": [],
"source_repository": null
},
{
"id": 83,
"name": "Phylogeny.fr",
"description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
"homepage": "http://www.phylogeny.fr/",
"biotoolsID": "phylogeny.fr",
"biotoolsCURIE": "biotools:phylogeny.fr",
"tool_type": [
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3293"
],
"primary_publication": [
"10.1093/nar/gkn180"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "IGS",
"email": null,
"url": "http://www.igs.cnrs-mrs.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Alexis Dereeper",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Valentin Guignon",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.phylogeny.fr/contacts.cgi",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.phylogeny.fr/documentation.cgi",
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:33:44.667229Z",
"teams": [
"ATGC",
"PACA-Bioinfo"
],
"source_repository": null
},
{
"id": 52,
"name": "Gametogenesis and reproductive tissue expression",
"description": "High-throughput expression data relevant for germline development and fertility across species.",
"homepage": "http://www.germonline.org/",
"biotoolsID": "germonline",
"biotoolsCURIE": "biotools:germonline",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0623"
],
"primary_publication": [
"10.1093/database/baq030"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "michael.primig@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.germonline.org/gol_4_userguide.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:35:55.972418Z",
"teams": [
"GenOuest"
],
"source_repository": "http://www.germonline.org/gol_4_userguide.pdf"
},
{
"id": 91,
"name": "DataDiscovery",
"description": "DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.\n\nThis tool is expected to be easily customizable for specific filters, environments, or data schemas. Its current implementations supported by URGI are: WheatIS, Plant, RARe.",
"homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
"biotoolsID": "DataDiscovery",
"biotoolsCURIE": "biotools:DataDiscovery",
"tool_type": [
"Database portal",
"Web service",
"Web API",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI",
"FR"
],
"scientific_topics": [
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_0610",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_3810"
],
"primary_publication": [
"10.3835/plantgenome2015.06.0038"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Support",
"Primary contact"
],
"name": "urgi-support",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "BSD-3-Clause",
"documentation": "https://forgemia.inra.fr/urgi-is/data-discovery/blob/master/HELP.md",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-09-06T15:57:35.550435Z",
"teams": [
"PlantBioinfoPF"
],
"source_repository": "https://forgemia.inra.fr/urgi-is/data-discovery"
},
{
"id": 84,
"name": "IMGT, the international ImMunoGeneTics information system",
"description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
"homepage": "http://www.imgt.org/",
"biotoolsID": "imgt",
"biotoolsCURIE": "biotools:imgt",
"tool_type": [
"Database portal",
"Bioinformatics portal",
"Web application",
"Ontology"
],
"collection": [
"elixir-fr-sdp-2019",
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_3930"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.imgt.org/IMGTinformation/Contact.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/FAQ/",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:34:08.902650Z",
"teams": [],
"source_repository": null
},
{
"id": 31,
"name": "Orphadata",
"description": "A comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format.",
"homepage": "http://www.orphadata.org/",
"biotoolsID": "orphadata",
"biotoolsCURIE": "biotools:orphadata",
"tool_type": [
"Database portal",
"Web API",
"SPARQL endpoint"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0089",
"http://edamontology.org/topic_3068"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Céline Rousselot",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Samuel Demarest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marc Hanauer",
"email": "marc.hanauer@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Orphanet Inserm",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "CC-BY-4.0",
"documentation": "http://www.orphadata.org/cgi-bin/index.php/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:46:06.717312Z",
"teams": [],
"source_repository": null
},
{
"id": 128,
"name": "Tedna",
"description": "A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.",
"homepage": "http://urgi.versailles.inra.fr/Tools/Tedna",
"biotoolsID": "tedna",
"biotoolsCURIE": "biotools:tedna",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0654"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "urgi-contact@versailles.inra.fr",
"url": "https://urgi.versailles.inra.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf",
"maturity": null,
"cost": null,
"unique_visits": 557,
"citations": null,
"annual_visits": 1872,
"last_update": "2018-12-10T12:58:49Z",
"teams": [],
"source_repository": null
},
{
"id": 85,
"name": "ARIA",
"description": "A software for automated NOE assignment and NMR structure calculation.",
"homepage": "http://aria.pasteur.fr/",
"biotoolsID": "aria",
"biotoolsCURIE": "biotools:aria",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019",
"Institut Pasteur",
"FR"
],
"scientific_topics": [
"http://edamontology.org/topic_1317",
"http://edamontology.org/topic_0593",
"http://edamontology.org/topic_0176",
"http://edamontology.org/topic_3306",
"http://edamontology.org/topic_3332",
"http://edamontology.org/topic_2275",
"http://edamontology.org/topic_0081",
"http://edamontology.org/topic_0078"
],
"primary_publication": [
"10.1093/bioinformatics/btl589"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Michael Nilges",
"email": "michael.nilges@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Benjamin Bardiaux",
"email": "benjamin.bardiaux@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Institut Pasteur",
"email": null,
"url": "http://aria.pasteur.fr/contact-info",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "MIT",
"documentation": "http://aria.pasteur.fr/documentation",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:37:34.670261Z",
"teams": [],
"source_repository": null
},
{
"id": 53,
"name": "LepidoDB",
"description": "Genomics of two major lepidopteran pests.",
"homepage": "http://www.inra.fr/lepidodb",
"biotoolsID": "lepidodb",
"biotoolsCURIE": "biotools:lepidodb",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0622"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "BIPAA platform",
"email": "bipaa@rennes.inra.fr",
"url": "http://www.inra.fr/bipaa",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://bipaa.genouest.org/is/lepidodb/",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-11T18:57:25Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 165,
"name": "T-Coffee",
"description": "A multiple sequence alignment package that can be used for DNA, RNA and protein sequences. It can be used to align sequences or to combine the output of other alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment.",
"homepage": "http://www.tcoffee.org/Projects/tcoffee/",
"biotoolsID": "tcoffee",
"biotoolsCURIE": "biotools:tcoffee",
"tool_type": [
"Command-line tool"
],
"collection": [
"T-Coffee"
],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [
"10.1006/jmbi.2000.4042"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Cedric Notredame",
"email": "cedric.notredame@gmail.com",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://www.tcoffee.org/Projects/tcoffee/documentation/README",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 11271,
"last_update": "2019-03-14T11:57:50Z",
"teams": [],
"source_repository": null
}
]
}