GET /api/tool/?format=api&offset=40&ordering=biotoolsID
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 211,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=60&ordering=biotoolsID",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=20&ordering=biotoolsID",
    "results": [
        {
            "id": 45,
            "name": "BLC2db",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 46,
            "name": "HBVdb",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 24,
            "name": "Conjdb",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 66,
            "name": "CYPedia ",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 239,
            "name": "acdtool",
            "description": "Web-server for the generic analysis of large data sets of counts.",
            "homepage": "http://www.igs.cnrs-mrs.fr/acdtool/",
            "biotoolsID": "acdtool",
            "biotoolsCURIE": "biotools:acdtool",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2269"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-04-19T10:10:12.395333Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 5,
            "name": "AgroLD",
            "description": "The RDF Knowledge-based Database for plant molecular networks.",
            "homepage": "http://agrold.southgreen.fr/agrold/",
            "biotoolsID": "AgroLD",
            "biotoolsCURIE": "biotools:AgroLD",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-11-05T14:52:28Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 57,
            "name": "AnnotQTL",
            "description": "Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.",
            "homepage": "http://annotqtl.genouest.org/",
            "biotoolsID": "annotqtl",
            "biotoolsCURIE": "biotools:annotqtl",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0085"
            ],
            "primary_publication": [
                "10.1093/nar/gkr361"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://annotqtl.genouest.org/tutorial",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:06:26.428724Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 54,
            "name": "AphidBase",
            "description": "An aphid genome database.",
            "homepage": "http://aphidbase.com/",
            "biotoolsID": "aphidbase",
            "biotoolsCURIE": "biotools:aphidbase",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [
                "10.1111/j.1365-2583.2009.00930.x"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "BIPAA platform",
                    "email": "bipaa@rennes.inra.fr",
                    "url": "http://www.inra.fr/bipaa",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bipaa.genouest.org/is/aphidbase/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 85,
            "name": "ARIA",
            "description": "A software for automated NOE assignment and NMR structure calculation.",
            "homepage": "http://aria.pasteur.fr/",
            "biotoolsID": "aria",
            "biotoolsCURIE": "biotools:aria",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Institut Pasteur",
                "FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_1317",
                "http://edamontology.org/topic_0593",
                "http://edamontology.org/topic_0176",
                "http://edamontology.org/topic_3306",
                "http://edamontology.org/topic_3332",
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btl589"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Michael Nilges",
                    "email": "michael.nilges@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Bardiaux",
                    "email": "benjamin.bardiaux@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "http://aria.pasteur.fr/contact-info",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "http://aria.pasteur.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:37:34.670261Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 135,
            "name": "Askomics",
            "description": "AskOmics is a visual SPARQL query interface supporting both intuitive data integration and querying while shielding the user from most of the technical difficulties underlying RDF and SPARQL",
            "homepage": "https://github.com/askomics",
            "biotoolsID": "askomics",
            "biotoolsCURIE": "biotools:askomics",
            "tool_type": [
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3366"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Anthony Bretaudeau",
                    "email": "anthony.bretaudeau@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Olivier Dameron",
                    "email": "olivier.dameron@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Olivier Filangi",
                    "email": "olivier.filangi@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "https://github.com/askomics/askomics",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2025-06-09T11:52:30.706337Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 180,
            "name": "Assemble2",
            "description": "Design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera.",
            "homepage": "http://bioinformatics.org/assemble/",
            "biotoolsID": "assemble2",
            "biotoolsCURIE": "biotools:assemble2",
            "tool_type": [
                "Web API"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btq321"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "BioCatalogue",
                    "email": null,
                    "url": "https://www.biocatalogue.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.bioinformatics.org/assemble/contacts.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioinformatics.org/assemble/",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:45:38.090886Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 117,
            "name": "AuReMe",
            "description": "A unified workspace built around a Python package PADMet (Python library for hAndling metaData of METabolism), to house the reconstruction of genome-scale metabolic models.",
            "homepage": "http://aureme.genouest.org",
            "biotoolsID": "aureme",
            "biotoolsCURIE": "biotools:aureme",
            "tool_type": [
                "Command-line tool",
                "Workbench",
                "Workflow"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_2259"
            ],
            "primary_publication": [
                "10.1371/journal.pcbi.1006146"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "anne.siegel@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "http://aureme.genouest.org/aureme.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:31.744031Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 136,
            "name": "AutoGRAPH",
            "description": "Integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.",
            "homepage": "http://autograph.genouest.org/",
            "biotoolsID": "autograph",
            "biotoolsCURIE": "biotools:autograph",
            "tool_type": [
                "Web service"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Derrien T",
                    "email": "toma.derrien@gmail.com",
                    "url": "http://www-recomgen.univ-rennes1.fr/doggy.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://autograph.genouest.org/Tutorial.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:04:29.788401Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 36,
            "name": "Banana Genome Hub",
            "description": "A Next-Generation Information System for Musa genomics",
            "homepage": "https://banana-genome-hub.southgreen.fr/",
            "biotoolsID": "Banana_Genome_Hub",
            "biotoolsCURIE": "biotools:Banana_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "ANR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaëtan Droc",
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Mathieu Rouard",
                    "email": "m.rouard@cgiar.org",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioversity International",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://banana-genome-hub.southgreen.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:38.690746Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 150,
            "name": "BioMAJ",
            "description": "BioMAJ is a workflow engine dedicated to data synchronization and processing. The Software automates the update cycle and the supervision of the locally mirrored databank repository.",
            "homepage": "http://biomaj.genouest.org/",
            "biotoolsID": "biomaj",
            "biotoolsCURIE": "biotools:biomaj",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btn325"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest platform",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Olivier Sallou",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "http://biomaj.readthedocs.io/en/latest/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T16:17:07.096336Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 169,
            "name": "BIONJ",
            "description": "This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.",
            "homepage": "http://www.atgc-montpellier.fr/bionj/",
            "biotoolsID": "bionj",
            "biotoolsCURIE": "biotools:bionj",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric RIVALS",
                    "email": "Eric.Rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~gascuel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/bionj/paper.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:15:50.001899Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 86,
            "name": "BIII (BioImage Informatics Index, biii.eu)",
            "description": "BIII (BioImage Informatics Index, biii.eu) is a registry of software tools, image databases for benchmarking, and training materials for bioimage analysis. Software tools are organized as either a full protocol of analysis (workflow), a specific component to construct a workflow, or a software platform or library (collection). They are described using EDAM-bioimaging. All entries are exposed following FAIR principles and accessible for other usage with ODC-By v1.0 license.",
            "homepage": "https://biii.eu",
            "biotoolsID": "BISE",
            "biotoolsCURIE": "biotools:BISE",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "NEUBIAS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3298",
                "http://edamontology.org/topic_3382"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NEUBIAS Network of Bioimage Analysts",
                    "email": null,
                    "url": "https://neubias.eu",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "COST action having supported the creation and curation of this database"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Perrine Paul-Gilloteaux",
                    "email": "perrine.paul-gilloteaux@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4822-165X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Leader of the project"
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Taggers",
                    "email": null,
                    "url": "http://biii.eu/show-taggers",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "People curating tools"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Matúš Kalaš",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-1509-4981",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Coordinator of the EDAM-bioimaging ontology development"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Leandro Scholz",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-2411-0429",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Worked on the curation instructions"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Kota Miura",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6926-191X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Main technical support and one of the founders of the project"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chong Zhang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Co-leader of the developement"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Florian Levet",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4009-6225",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Development of Python scripts"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alban Gaignard",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3597-8557",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Developed the core ontology (data model) and enabled reuse of the content through W3C standards"
                }
            ],
            "tool_licence": "Other",
            "documentation": "https://github.com/NeuBIAS/bise/wiki",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-03-26T15:45:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 47,
            "name": "BYKdb",
            "description": "Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.",
            "homepage": "http://bykdb.ibcp.fr/BYKdb/",
            "biotoolsID": "bykdb",
            "biotoolsCURIE": "biotools:bykdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact form",
                    "email": null,
                    "url": "https://bykdb.ibcp.fr/BYKdb/BYKdbContact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://bykdb.ibcp.fr/BYKdb/BYKdbHelp",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:08:37.507577Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 181,
            "name": "CARNAC",
            "description": "Server which predicts conserved secondary structure elements of homologous RNAs.  The input of a set of RNA sequences are not required to be previously aligned.",
            "homepage": "http://bioinfo.lifl.fr/carnac",
            "biotoolsID": "carnac",
            "biotoolsCURIE": "biotools:carnac",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0082",
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0781"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Carnac team",
                    "email": "carnac@univ-lille1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioinfo.lifl.fr/carnac/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:52:06.002489Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        }
    ]
}