HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 238,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=60&ordering=-maturity",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=20&ordering=-maturity",
"results": [
{
"id": 59,
"name": "KBDOCK",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 60,
"name": "ICS Mouse Zoo",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 61,
"name": "MousePat",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 62,
"name": "GxDB",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 63,
"name": "BAliBASE",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 64,
"name": "EvoluCode ",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 66,
"name": "CYPedia ",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 67,
"name": "PlantRNA",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 287,
"name": "MiBiOmics",
"description": "An interactive web application for multi-omics data exploration and integration.\n\nA web application for multi-omics analysis.",
"homepage": "https://shiny-bird.univ-nantes.fr/app/Mibiomics",
"biotoolsID": "mibiomics",
"biotoolsCURIE": "biotools:mibiomics",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_3360",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": "Johanna Zoppi",
"email": "johanna.zoppi@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-8688-8201",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Michel Neunlist",
"email": "Michel.Neunlist@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-1892-5071",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "BiRD bioinformatics facility",
"email": "pf-bird@univ-nantes.fr",
"url": "http://pf-bird.univ-nantes.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [],
"name": "LS2N",
"email": null,
"url": "http://www.ls2n.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Samuel Chaffron",
"email": "samuel.chaffron@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-5903-617X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "TENS",
"email": null,
"url": "https://www.inserm-tens.com/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2021-11-08T21:27:18.126015Z",
"teams": [
"BiRD"
],
"source_repository": null
},
{
"id": 114,
"name": "GalaxEast",
"description": "GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses.",
"homepage": "http://www.galaxeast.fr/",
"biotoolsID": "GalaxEast",
"biotoolsCURIE": "biotools:GalaxEast",
"tool_type": [
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3391"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-01-24T09:54:41Z",
"teams": [],
"source_repository": null
},
{
"id": 262,
"name": "GeMo",
"description": "A web-based platform for the visualization and curation of genome ancestry mosaics.",
"homepage": "https://gemo.southgreen.fr/",
"biotoolsID": "gemo",
"biotoolsCURIE": "biotools:gemo",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3500",
"http://edamontology.org/topic_0625",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_3810"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Mathieu Rouard",
"email": "m.rouard@cgiar.org",
"url": null,
"orcidid": "https://orcid.org/0000-0003-0284-1885",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Marilyne Summo",
"email": "marilyne.summo@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-9308-974X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Gaëtan Droc",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0003-1849-1269",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Guillaume Martin",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0002-1801-7500",
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://gemo.readthedocs.io",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T15:31:16.942311Z",
"teams": [
"South Green"
],
"source_repository": "https://github.com/SouthGreenPlatform/GeMo"
},
{
"id": 288,
"name": "MAGNETO",
"description": "An automated workflow for genome-resolved metagenomics",
"homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto",
"biotoolsID": "magneto",
"biotoolsCURIE": "biotools:magneto",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_3050",
"http://edamontology.org/topic_3697",
"http://edamontology.org/topic_3174",
"http://edamontology.org/topic_0196"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Samuel Chaffron",
"email": "samuel.chaffron@ls2n.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Benjamin Churcheward",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Audrey Bihouée",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Guillaume Fertin",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Hugo Lefeuvre",
"email": "hugo.lefeuvre@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-02-24T16:29:20.503951Z",
"teams": [
"BiRD"
],
"source_repository": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto"
},
{
"id": 261,
"name": "Panache",
"description": "Panache (Pangenome analyzer with chromosomal exploration) is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show aresence/absence information of pangenomic blocks of sequence or genes in a browser-like display.",
"homepage": "http://github.com/SouthGreenPlatform/panache",
"biotoolsID": "panache",
"biotoolsCURIE": "biotools:panache",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0654"
],
"primary_publication": [
"10.1093/bioinformatics/btab688"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Mathieu Rouard",
"email": "m.rouard@cgiar.org",
"url": null,
"orcidid": "https://orcid.org/0000-0003-0284-1885",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Éloi Durant",
"email": "eloi.durant@ird.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-2734-4327",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2021-11-01T10:14:54.337479Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 254,
"name": "MOGAMUN",
"description": "A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks.\n\nMOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., highly connected subnetworks with an overall deregulation) in MUltiplex biological Networks. For a detailed description of MOGAMUN check out the preprint https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1. All the expression datasets and networks that we used to obtain the results reported in our preprint are available in the GitHub repository https://github.com/elvanov/MOGAMUN-data.",
"homepage": "https://github.com/elvanov/MOGAMUN",
"biotoolsID": "mogamun",
"biotoolsCURIE": "biotools:mogamun",
"tool_type": [
"Library"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0121",
"http://edamontology.org/topic_0203",
"http://edamontology.org/topic_3170",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": null,
"email": "anais.baudot@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2021-02-26T09:22:38Z",
"teams": [
"Systems Biomedicine"
],
"source_repository": null
},
{
"id": 25,
"name": "secreton",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 239,
"name": "ACDtool",
"description": "Web-server for the generic analysis of large data sets of counts.",
"homepage": "https://www.igs.cnrs-mrs.fr/acdtool/",
"biotoolsID": "acdtool",
"biotoolsCURIE": "biotools:acdtool",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_2269"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-10T09:25:24.490675Z",
"teams": [
"PACA-Bioinfo"
],
"source_repository": null
},
{
"id": 15,
"name": "Locus Specific Databases UMD",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 79,
"name": "CRISPRdb ",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 263,
"name": "TrEMOLO",
"description": "Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.",
"homepage": "https://github.com/DrosophilaGenomeEvolution/TrEMOLO",
"biotoolsID": "tremolo",
"biotoolsCURIE": "biotools:tremolo",
"tool_type": [
"Command-line tool",
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3175",
"http://edamontology.org/topic_0798",
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_3168"
],
"primary_publication": [
"10.1186/s13059-023-02911-2"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [],
"name": "Anna-Sophie Fiston-Lavier",
"email": "anna-sophie.fiston-lavier@umontpellier.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-7306-6532",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Séverine Chambeyron",
"email": "severine.chambeyron@igh.cnrs.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-2775-6556",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:41:13.039486Z",
"teams": [
"South Green"
],
"source_repository": "https://dataverse.ird.fr/dataverse/tremolo_data"
},
{
"id": 276,
"name": "ODAMNet",
"description": "A Python package to study molecular relationship between environmental factors and rare diseases.",
"homepage": "https://pypi.org/project/ODAMNet/",
"biotoolsID": "odamnet",
"biotoolsCURIE": "biotools:odamnet",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [],
"name": "Morgane Térézol",
"email": "morgane.terezol@univ-amu.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-4090-2573",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Anaïs Baudot",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0003-0885-7933",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Ozan Ozisik",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0001-5980-8002",
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://odamnet.readthedocs.io/en/latest/",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:02:02.850639Z",
"teams": [],
"source_repository": "https://github.com/MOohTus/ODAMNet"
}
]
}