HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 233,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=60&ordering=-last_update",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=20&ordering=-last_update",
"results": [
{
"id": 40,
"name": "BactPepDB",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 43,
"name": "MeryB",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 45,
"name": "BLC2db",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 46,
"name": "HBVdb",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 87,
"name": "Genetic and Genomic Information System (GnpIS)",
"description": "GnpIS is an integrative and multi-species information system dedicated to plants, including forest trees. It handles various types of data, focusing on genetic resources and phenomics. It allows researchers from the Plant community to access and cross-reference genetic data (accessions, phenotypes, polymorphisms, markers and QTLs) and genomic data (sequences, physical maps, genome annotations) for species of agronomic and forestry interest.\nAccessible via a public web portal, GnpIS enables different types of data to be managed, browsed and retrieved via specialized search tools and web services.\nGnpIS is used by the French National Research Institute for Agriculture, Food and Environment (INRAE) and its partners in major national and international projects.",
"homepage": "https://urgi.versailles.inrae.fr/gnpis",
"biotoolsID": "gnpis",
"biotoolsCURIE": "biotools:gnpis",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"Animal and Crop Genomics"
],
"scientific_topics": [
"http://edamontology.org/topic_0622",
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_0625"
],
"primary_publication": [
"10.1093/database/bat058",
"10.1007/978-1-4939-6658-5_5",
"10.3835/plantgenome2015.06.0038"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "urgi-contact@versailles.inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "URGI helpdesk",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": "CC-BY-4.0",
"documentation": "https://urgi.versailles.inrae.fr/Data-Services/Data-Access/GnpIS",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-19T17:15:16.754031Z",
"teams": [
"URGI"
],
"source_repository": "https://forge.inrae.fr/urgi/is/gnpis"
},
{
"id": 237,
"name": "D-GENIES",
"description": "D-GENIES – for Dot plot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualization.",
"homepage": "https://dgenies.toulouse.inrae.fr/",
"biotoolsID": "d-genies",
"biotoolsCURIE": "biotools:d-genies",
"tool_type": [
"Command-line tool",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0622",
"http://edamontology.org/topic_0092",
"http://edamontology.org/topic_0080"
],
"primary_publication": [
"10.7717/peerj.4958"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer"
],
"name": "Floréal Cabanettes",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Christophe Klopp",
"email": "christophe.klopp@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-7126-5477",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact",
"Developer"
],
"name": "Philippe Bordron",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0003-1975-0920",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Vincent Dominguez",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Christophe Klopp",
"email": "christophe.klopp@toulouse.inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "GenoToul bioinformatics facility",
"email": null,
"url": "http://bioinfo.genotoul.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": null,
"documentation": "https://dgenies.readthedocs.io/en/latest/index.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-18T10:02:18.098079Z",
"teams": [],
"source_repository": "https://github.com/genotoul-bioinfo/dgenies"
},
{
"id": 247,
"name": "metagWGS",
"description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
"homepage": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs",
"biotoolsID": "metagwgs",
"biotoolsCURIE": "biotools:metagwgs",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3391",
"http://edamontology.org/topic_3174"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Claire Hoede",
"email": "claire.hoede@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-5054-7731",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "GenoToul bioinformatics facility",
"email": null,
"url": "http://bioinfo.genotoul.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": null,
"documentation": "https://genotoul-bioinfo.pages-forge.inrae.fr/metagwgs/master/index.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-11T14:51:44.804907Z",
"teams": [
"Genotoul-bioinfo"
],
"source_repository": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs"
},
{
"id": 282,
"name": "easy16S",
"description": "Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.",
"homepage": "https://easy16s.migale.inrae.fr/",
"biotoolsID": "easy16s",
"biotoolsCURIE": "biotools:easy16s",
"tool_type": [],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3174"
],
"primary_publication": [
"10.21105/joss.06704"
],
"operating_system": [
"Mac",
"Windows",
"Linux"
],
"tool_credit": [
{
"type_role": [],
"name": "Cédric Midoux",
"email": "cedric.midoux@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-7964-0929",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://easy16s.migale.inrae.fr/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-11T14:36:21.065324Z",
"teams": [
"MIGALE"
],
"source_repository": "https://doi.org/10.57745/ZN1HXQ"
},
{
"id": 239,
"name": "ACDtool",
"description": "Web-server for the generic analysis of large data sets of counts.",
"homepage": "https://www.igs.cnrs-mrs.fr/acdtool/",
"biotoolsID": "acdtool",
"biotoolsCURIE": "biotools:acdtool",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_2269"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-12-10T09:25:24.490675Z",
"teams": [
"PACA-Bioinfo"
],
"source_repository": null
},
{
"id": 137,
"name": "SHAMAN",
"description": "SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. It is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, as suggested in [McMurdie and Holmes 2014, Jonsson2016]. It robustly identifies the differential abundant genera with the Generalized Linear Model implemented in DESeq2 [Love 2014].",
"homepage": "http://shaman.c3bi.pasteur.fr/",
"biotoolsID": "shaman",
"biotoolsCURIE": "biotools:shaman",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3174"
],
"primary_publication": [
"10.1073/pnas.1523899113"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "Institut Pasteur",
"email": null,
"url": "https://research.pasteur.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Stevenn Volant",
"email": null,
"url": "https://research.pasteur.fr/en/member/stevenn-volant/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Hugo Varet",
"email": null,
"url": "https://research.pasteur.fr/en/member/hugo-varet/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Pierre Lechat",
"email": null,
"url": "https://research.pasteur.fr/en/member/pierre-lechat/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Amine Ghozlane",
"email": null,
"url": "https://research.pasteur.fr/en/member/amine-ghozlane/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "C3BI",
"email": null,
"url": "https://research.pasteur.fr/en/center/c3bi/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Bioinformatics and Biostatistics Hub",
"email": null,
"url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "SHAMAN team",
"email": "shaman@pasteur.fr",
"url": "https://research.pasteur.fr/en/software/shaman-shiny-application-for-metagenomic-analysis/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://shaman.c3bi.pasteur.fr/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 742,
"citations": null,
"annual_visits": 1855,
"last_update": "2025-10-23T10:46:59.953305Z",
"teams": [
"Pasteur HUB"
],
"source_repository": "https://github.com/aghozlane/shaman"
},
{
"id": 105,
"name": "REPET",
"description": "The REPET package integrates bioinformatics pipelines dedicated to detect, annotate and analyze transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii)\n TEannot, which mines a genome with a library of TE sequences, for instance the one produced by the TEdenovo pipeline, to provide TE annotations exported into GFF3 files.",
"homepage": "https://urgi.versailles.inrae.fr/Tools/REPET",
"biotoolsID": "repet",
"biotoolsCURIE": "biotools:repet",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI",
"REPET",
"PlantBioinfoPF"
],
"scientific_topics": [
"http://edamontology.org/topic_0157",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_0097"
],
"primary_publication": [
"10.1371/journal.pone.0091929",
"10.1371/journal.pone.0016526",
"10.1371/journal.pcbi.0010022",
"10.1007/s00239-003-0007-2"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer",
"Contributor",
"Maintainer",
"Provider",
"Support",
"Documentor"
],
"name": "URGI",
"email": "urgi-repet@versailles.inra.fr",
"url": "http://urgi.versailles.inra.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
},
{
"type_role": [
"Developer",
"Contributor",
"Maintainer",
"Provider",
"Support",
"Documentor"
],
"name": "URGI",
"email": "urgi-repet@versailles.inrae.fr",
"url": "http://urgi.versailles.inrae.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
}
],
"tool_licence": "CECILL-2.0",
"documentation": "https://urgi.versailles.inrae.fr/Tools/REPET",
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-09-09T08:10:41.737859Z",
"teams": [
"URGI"
],
"source_repository": "https://urgi.versailles.inrae.fr/download/repet/"
},
{
"id": 92,
"name": "RARe",
"description": "RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultivated plants, wild species related to domestic animals, forest trees, micro-organisms of agronomic or agri-food interest, micro-organisms and environmental organisms.\nThe purpose of this web portal is to facilitate the discoverability of these data. \nRARe search is an implementation of DataDiscovery.",
"homepage": "https://urgi.versailles.inrae.fr/rare/",
"biotoolsID": "RARe",
"biotoolsCURIE": "biotools:RARe",
"tool_type": [
"Database portal",
"Web service",
"Web API",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI"
],
"scientific_topics": [
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_0610",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_3810"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact",
"Support"
],
"name": "Support service",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "BSD-3-Clause",
"documentation": "https://urgi.versailles.inrae.fr/rare/about",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-07-29T13:42:40.608985Z",
"teams": [
"URGI"
],
"source_repository": null
},
{
"id": 91,
"name": "DataDiscovery",
"description": "DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.\n\nThis tool is expected to be easily customizable for specific filters, environments, or data schemas. Its current implementations supported by URGI are: WheatIS, Plant, RARe.",
"homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
"biotoolsID": "DataDiscovery",
"biotoolsCURIE": "biotools:DataDiscovery",
"tool_type": [
"Database portal",
"Web service",
"Web API",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI",
"FR"
],
"scientific_topics": [
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_0610",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_3810"
],
"primary_publication": [
"10.3835/plantgenome2015.06.0038"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact",
"Support"
],
"name": "urgi-support",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "BSD-3-Clause",
"documentation": "https://forgemia.inra.fr/urgi-is/data-discovery/blob/master/HELP.md",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-07-29T13:42:39.375595Z",
"teams": [
"URGI"
],
"source_repository": "https://forgemia.inra.fr/urgi-is/data-discovery"
},
{
"id": 135,
"name": "Askomics",
"description": "AskOmics is a visual SPARQL query interface supporting both intuitive data integration and querying while shielding the user from most of the technical difficulties underlying RDF and SPARQL",
"homepage": "https://github.com/askomics",
"biotoolsID": "askomics",
"biotoolsCURIE": "biotools:askomics",
"tool_type": [
"Desktop application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3366"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Olivier Dameron",
"email": "olivier.dameron@irisa.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Olivier Filangi",
"email": "olivier.filangi@inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Anthony Bretaudeau",
"email": "anthony.bretaudeau@irisa.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "AGPL-3.0",
"documentation": "https://github.com/askomics/askomics",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2025-06-09T11:52:30.706337Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 88,
"name": "MetExplore",
"description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
"homepage": "http://www.metexplore.fr/",
"biotoolsID": "metexplore",
"biotoolsCURIE": "biotools:metexplore",
"tool_type": [
"Web service",
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019",
"EBI Training Tools"
],
"scientific_topics": [
"http://edamontology.org/topic_0602"
],
"primary_publication": [
"10.1093/nar/gky301",
"10.1093/nar/gkq312"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "MetaboHub",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Fabien JOURDAN",
"email": "fabien.jourdan@inra.fr",
"url": "https://sites.google.com/site/fabienjourdan/",
"orcidid": "https://orcid.org/0000-0001-9401-2894",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "ludovic.cottret@inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Support"
],
"name": null,
"email": "metexplore@oulouse.inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-04-28T07:17:11.601858Z",
"teams": [],
"source_repository": null
},
{
"id": 288,
"name": "MAGNETO",
"description": "An automated workflow for genome-resolved metagenomics",
"homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto",
"biotoolsID": "magneto",
"biotoolsCURIE": "biotools:magneto",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3697",
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_3174",
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_3050"
],
"primary_publication": [],
"operating_system": [
"Mac",
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [],
"name": "Samuel Chaffron",
"email": "samuel.chaffron@ls2n.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Benjamin Churcheward",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Audrey Bihouée",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Guillaume Fertin",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Hugo Lefeuvre",
"email": "hugo.lefeuvre@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-02-24T16:29:20.503951Z",
"teams": [
"BiRD"
],
"source_repository": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto"
},
{
"id": 42,
"name": "ISfinder",
"description": "It is a dedicated insertion sequence (IS) database which assigns names to individual ISs to maintain a coherent nomenclature, an IS repositaory including >3000 individual ISs from both bacteria and archaea and provides a basis for IS classification. Each IS is indexed in ISfinder with various associated pieces of information and classified into a group or family to provide some insight into its phylogeny.",
"homepage": "http://www-is.biotoul.fr",
"biotoolsID": "isfinder",
"biotoolsCURIE": "biotools:isfinder",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0798",
"http://edamontology.org/topic_3068",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0084",
"http://edamontology.org/topic_3168"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Patricia Siguier",
"email": "Patricia.Siguier@ibcg.biotoul.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://www-is.biotoul.fr/general_information.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-01-24T09:59:36.949842Z",
"teams": [],
"source_repository": null
},
{
"id": 278,
"name": "metabocloud",
"description": "Web portal to gather tools to improve metabolomic annotations through API microservices based on a cloud infrastructure.",
"homepage": "https://metabocloud.mesocentre.uca.fr/",
"biotoolsID": "metabocloud",
"biotoolsCURIE": "biotools:metabocloud",
"tool_type": [
"Bioinformatics portal"
],
"collection": [
"metabolomic platform"
],
"scientific_topics": [
"http://edamontology.org/topic_3172"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac",
"Windows"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Franck Giacomoni",
"email": "franck.giacomoni@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-6063-4214",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Provider"
],
"name": "Nadia Goué",
"email": "nadia.goue@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-2750-1473",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer",
"Contributor"
],
"name": "Nils Paulhe",
"email": "nils.paulhe@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-4550-1258",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Provider"
],
"name": "Thomas Bellembois",
"email": "thomas.bellembois@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0009-0001-6661-0691",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Faustine Souc",
"email": "faustine.souc@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0009-0004-9172-0632",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Antoine Mahul",
"email": "antoine.mahul@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-9729-1603",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Emerging",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-01-22T10:11:29.320362Z",
"teams": [
"AuBi"
],
"source_repository": null
},
{
"id": 150,
"name": "BioMAJ",
"description": "BioMAJ is a workflow engine dedicated to data synchronization and processing. The Software automates the update cycle and the supervision of the locally mirrored databank repository.",
"homepage": "http://biomaj.genouest.org/",
"biotoolsID": "biomaj",
"biotoolsCURIE": "biotools:biomaj",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3071"
],
"primary_publication": [
"10.1093/bioinformatics/btn325"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "GenOuest platform",
"email": "support@genouest.org",
"url": "http://www.genouest.org",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Olivier Sallou",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "AGPL-3.0",
"documentation": "http://biomaj.readthedocs.io/en/latest/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T16:17:07.096336Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 198,
"name": "RASTA-Bacteria",
"description": "Automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.",
"homepage": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/",
"biotoolsID": "rasta-bacteria",
"biotoolsCURIE": "biotools:rasta-bacteria",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3301"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Emeric Sevin",
"email": "esevin@ebi.ac.uk",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Frédérique Hubler",
"email": "fhubler@univ-rennes1.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/index.php?page=faq",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T16:14:59.683127Z",
"teams": [
"GenOuest"
],
"source_repository": null
}
]
}