GET /api/tool/?format=api&offset=200&ordering=scientific_topics
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=220&ordering=scientific_topics",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=scientific_topics",
    "results": [
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 265,
            "name": "MetamORF",
            "description": "A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta-analysis.\n\nMetamORF: A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta analysis.",
            "homepage": "http://metamorf.hb.univ-amu.fr/",
            "biotoolsID": "metamorf",
            "biotoolsCURIE": "biotools:metamorf",
            "tool_type": [
                "Command-line tool",
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0659"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Christine Brun",
                    "email": "christine-g.brun@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-22T07:55:26Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": "https://github.com/TAGC-NetworkBiology/MetamORF"
        },
        {
            "id": 174,
            "name": "Linda",
            "description": "The web application Linda offers a complete tool for entering and managing metadata associated with a phenotyping experiment on plants. It thus makes it possible to intuitively describe experimental related information such as, for example, the experimental design, the growth protocols, the environmental variable measurements, etc. Linda is coupled with a database that stores this information in a structured manneer using oriented graphs. This database uses reference ontologies (e.g., Plant Ontology, Crop Ontology, etc.) and standards dedicated to this type of experiment such as the Minimal Information About Plant Phenotyping Experiment (MIAPPE) standard. Data sharing is facilitated on the one hand by respecting the FAIR principles (Findable Accessible Interoperable Reusable) and oon the other hand, by exporting this metadata relating to the experiment in tabulated formats or formatted for submission in the international databases (ISA-tab).",
            "homepage": "https://services.cbib.u-bordeaux.fr/linda/",
            "biotoolsID": "xeml-lab",
            "biotoolsCURIE": "biotools:xeml-lab",
            "tool_type": [
                "Desktop application",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3292",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1111/j.1365-3040.2009.01964.x"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "CHen Zhui",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Emmanuel Bouilhol",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Yves Gibon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Cecile Cabasson",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université de Bordeaux (CGFB)",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": "benjamin.dartigues@u-bordeaux.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": "benjamin.dartigues@u-bordeaux.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Yves Gibon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Cecile Cabasson",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "UMR 1332 - Biologie du Fruit et Pathologie",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Alexis Groppi",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Centre de Bioinformatique de Bordeaux (CBiB)",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Macha Nikolski",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "INRA",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "u-bordeaux.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "https://services.cbib.u-bordeaux.fr/linda",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2022-09-27T14:48:43.394660Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": "https://services.cbib.u-bordeaux.fr/linda/"
        },
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 113,
            "name": "ParameciumDB",
            "description": "Online community database for Paramecium species. Contains annotation of genome sequences and features, genome-wide data sets, advanced capabilities to query, retrieve, visualize and compare data.",
            "homepage": "https://paramecium.i2bc.paris-saclay.fr",
            "biotoolsID": "parameciumdb",
            "biotoolsCURIE": "biotools:parameciumdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact Form",
                    "email": null,
                    "url": "https://paramecium.i2bc.paris-saclay.fr/cgi/user/contact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Terms of Use",
                    "email": null,
                    "url": "https://paramecium.i2bc.paris-saclay.fr/parawiki/Terms_of_Use",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:30.463079Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 258,
            "name": "FAIR-Checker",
            "description": "FAIR-Checker is a tool aimed at assessing FAIR principles and empowering data provider to enhance the quality of their digital resources. Data providers and consumers can check how FAIR are web resources. Developers can explore and inspect metadata exposed in web resources.",
            "homepage": "https://fair-checker.france-bioinformatique.fr",
            "biotoolsID": "fair-checker",
            "biotoolsCURIE": "biotools:fair-checker",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3316",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [
                "10.1186/s13326-023-00289-5"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:45:19.260708Z",
            "teams": [
                "IFB Core",
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 31,
            "name": "Orphadata",
            "description": "A comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format.",
            "homepage": "http://www.orphadata.org/",
            "biotoolsID": "orphadata",
            "biotoolsCURIE": "biotools:orphadata",
            "tool_type": [
                "Database portal",
                "Web API",
                "SPARQL endpoint"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_3068"
            ],
            "primary_publication": [
                "10.1002/humu.22078"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Inserm US14",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Céline Rousselot",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marc Hanauer",
                    "email": "marc.hanauer@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Orphanet Inserm",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Samuel Demarest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": "http://www.orphadata.org/cgi-bin/index.php/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T13:46:06.717312Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 156,
            "name": "ORDO",
            "description": "The Orphanet Rare Disease Ontology (ORDO) - structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features. It integrates a classification of rare diseases, relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).",
            "homepage": "http://www.ebi.ac.uk/ols/ontologies/ordo",
            "biotoolsID": "ordo",
            "biotoolsCURIE": "biotools:ordo",
            "tool_type": [
                "Ontology",
                "Web application",
                "Database portal"
            ],
            "collection": [
                "RD-connect",
                "Rare Disease"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3572",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3307"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Inserm US14",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact Form",
                    "email": null,
                    "url": "https://www.ebi.ac.uk/support/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "ols-submission@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Apache-2.0",
            "documentation": "https://www.ebi.ac.uk/ols/docs/index",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2020-09-16T07:06:49Z",
            "teams": [
                "Orphanet"
            ],
            "source_repository": null
        },
        {
            "id": 169,
            "name": "BIONJ",
            "description": "This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.",
            "homepage": "http://www.atgc-montpellier.fr/bionj/",
            "biotoolsID": "bionj",
            "biotoolsCURIE": "biotools:bionj",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric RIVALS",
                    "email": "Eric.Rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~gascuel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/bionj/paper.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:15:50.001899Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 42,
            "name": "ISfinder",
            "description": "It is a dedicated insertion sequence (IS) database which assigns names to individual ISs to maintain a coherent nomenclature, an IS repositaory including >3000 individual ISs from both bacteria and archaea and provides a basis for IS classification. Each IS is indexed in ISfinder with various associated pieces of information and classified into a group or family to provide some insight into its phylogeny.",
            "homepage": "http://www-is.biotoul.fr",
            "biotoolsID": "isfinder",
            "biotoolsCURIE": "biotools:isfinder",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0798",
                "http://edamontology.org/topic_3068",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patricia Siguier",
                    "email": "Patricia.Siguier@ibcg.biotoul.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www-is.biotoul.fr/general_information.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-01-24T09:59:36.949842Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 143,
            "name": "leBIBI",
            "description": "Quick bioInformatic phylogeny of prokaryotes.",
            "homepage": "https://umr5558-bibiserv.univ-lyon1.fr/lebibi/lebibi.cgi",
            "biotoolsID": "leBIBI",
            "biotoolsCURIE": "biotools:leBIBI",
            "tool_type": [],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0084"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 154145,
            "last_update": "2019-11-06T11:33:13Z",
            "teams": [
                "PRABI-Lyon-Grenoble"
            ],
            "source_repository": null
        },
        {
            "id": 142,
            "name": "SeaView",
            "description": "Multiplatform graphical user interface designed to facilitate alignment and phylogenic tree building from molecular sequences.",
            "homepage": "http://doua.prabi.fr/software/seaview",
            "biotoolsID": "seaview",
            "biotoolsCURIE": "biotools:seaview",
            "tool_type": [
                "Command-line tool",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0084"
            ],
            "primary_publication": [
                "10.1093/molbev/msp259"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IFB ELIXIR-FR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Manolo Gouy",
                    "email": "mgouy@biomserv.uni-lyon1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://doua.prabi.fr/main/index",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:49:59.006607Z",
            "teams": [
                "PRABI-Lyon-Grenoble"
            ],
            "source_repository": null
        },
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 103,
            "name": "Ciona robusta Anatomy and Development Ontology",
            "description": "The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.",
            "homepage": "https://www.aniseed.fr/aniseed/anatomy/find_devstage",
            "biotoolsID": "Ciona_robusta_Anatomy_and_Development_Ontology",
            "biotoolsCURIE": "biotools:Ciona_robusta_Anatomy_and_Development_Ontology",
            "tool_type": [
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3064"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966"
            ],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": "Freeware",
            "documentation": null,
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T13:07:23.980491Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 140,
            "name": "NucleusJ",
            "description": "Simple and user-friendly ImageJ plugin dedicated to the characterization of nuclear morphology and chromatin organization in 3D.",
            "homepage": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start",
            "biotoolsID": "nucleusj",
            "biotoolsCURIE": "biotools:nucleusj",
            "tool_type": [
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_3382"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Axel Poulet",
                    "email": "pouletaxel@gmail.com",
                    "url": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#authors",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#usage",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:54:14.614349Z",
            "teams": [
                "AuBi"
            ],
            "source_repository": null
        },
        {
            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3065",
                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_3064",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966",
                "10.1093/nar/gkx1108",
                "10.1016/j.cub.2005.12.044",
                "10.1093/nar/gkz955"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "contact@aniseed.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patrick Lemaire",
                    "email": "patrick.lemaire@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0003-4925-2009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christelle Dantec",
                    "email": "christelle.dantec@crbm.cnrs.fr",
                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
                    "orcidid": "https://orcid.org/0000-0001-7247-6460",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T14:25:18.910230Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 154,
            "name": "CompPhy",
            "description": "Web-based collaborative platform for comparing phylogenies.",
            "homepage": "http://www.atgc-montpellier.fr/compphy/",
            "biotoolsID": "compphy",
            "biotoolsCURIE": "biotools:compphy",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_3056"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact form",
                    "email": null,
                    "url": "http://www.atgc-montpellier.fr/compphy/?p=contact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/compphy/?p=userguide",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:57Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 169,
            "name": "BIONJ",
            "description": "This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.",
            "homepage": "http://www.atgc-montpellier.fr/bionj/",
            "biotoolsID": "bionj",
            "biotoolsCURIE": "biotools:bionj",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric RIVALS",
                    "email": "Eric.Rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~gascuel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/bionj/paper.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:15:50.001899Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 243,
            "name": "RAPPAS",
            "description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
            "homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
            "biotoolsID": "RAPPAS",
            "biotoolsCURIE": "biotools:RAPPAS",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btz068"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Linard",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:27.880847Z",
            "teams": [],
            "source_repository": null
        }
    ]
}