GET /api/tool/?format=api&offset=200&ordering=id
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 207,
    "next": null,
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=id",
    "results": [
        {
            "id": 245,
            "name": "Gbrowse giant virus",
            "description": "A genome browser instance dedicated to giant viruses discovered by the IGS Laboratory",
            "homepage": "https://www.igs.cnrs-mrs.fr/cgi-bin/gb2/gbrowse",
            "biotoolsID": "gbrowse_giant_virus",
            "biotoolsCURIE": "biotools:gbrowse_giant_virus",
            "tool_type": [],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-12-01T20:12:00.006926Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 246,
            "name": "LSD",
            "description": "Fast dating using least-squares criteria and algorithms",
            "homepage": "http://www.atgc-montpellier.fr/LSD/",
            "biotoolsID": "lsdate",
            "biotoolsCURIE": "biotools:lsdate",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:10:18.382414Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 247,
            "name": "metagWGS",
            "description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
            "homepage": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs",
            "biotoolsID": "metagwgs",
            "biotoolsCURIE": "biotools:metagwgs",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3391",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Claire Hoede",
                    "email": "claire.hoede@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5054-7731",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenoToul bioinformatics facility",
                    "email": null,
                    "url": "http://bioinfo.genotoul.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/blob/master/README.md",
            "maturity": "Emerging",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-09-16T11:02:53.559295Z",
            "teams": [
                "Genotoul-bioinfo"
            ],
            "source_repository": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs"
        },
        {
            "id": 249,
            "name": "FROGS",
            "description": "The user-friendly and Galaxy-supported pipeline FROGS analyses large sets of DNA amplicons sequences accurately and rapidly, essential for microbe community studies.",
            "homepage": "http://frogs.toulouse.inra.fr/",
            "biotoolsID": "frogs",
            "biotoolsCURIE": "biotools:frogs",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "FROGS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btx791",
                "10.1093/bib/bbab318"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/geraldinepascal/FROGS",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:07:18.846597Z",
            "teams": [],
            "source_repository": "https://github.com/geraldinepascal/FROGS"
        },
        {
            "id": 254,
            "name": "MOGAMUN",
            "description": "A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks.\n\nMOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., highly connected subnetworks with an overall deregulation) in MUltiplex biological Networks. For a detailed description of MOGAMUN check out the preprint https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1. All the expression datasets and networks that we used to obtain the results reported in our preprint are available in the GitHub repository https://github.com/elvanov/MOGAMUN-data.",
            "homepage": "https://github.com/elvanov/MOGAMUN",
            "biotoolsID": "mogamun",
            "biotoolsCURIE": "biotools:mogamun",
            "tool_type": [
                "Library"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_0121"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": null,
                    "email": "anais.baudot@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-26T09:22:38Z",
            "teams": [
                "NSBD"
            ],
            "source_repository": null
        },
        {
            "id": 255,
            "name": "Kmerator",
            "description": "Kmerator is a prototype tool designed for the prediction of specific k-mers (also called tags) from input sequences, considering a reference genome and an ENSEMBL-like transcriptome. From these specific k-mers, it also outputs their corresponding specific contigs which are sequences of consecutive k-mers (overlapping length between k-mers must be k-1, otherwise, it's a new contig). Kmerator first uses Jellyfish to create 2 requestable indexes from the reference genome and transcriptome, and second, decomposes your input transcript or gene sequences to count the occurences of each k-mer in the genome and transcriptome.",
            "homepage": "https://github.com/Transipedia/kmerator",
            "biotoolsID": "kmerator",
            "biotoolsCURIE": "biotools:kmerator",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_3360"
            ],
            "primary_publication": [
                "10.1093/nargab/lqab058"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Thérèse Commes",
                    "email": "therese.commes@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T16:01:46.602609Z",
            "teams": [
                "Bio2M"
            ],
            "source_repository": null
        },
        {
            "id": 258,
            "name": "FAIR-Checker",
            "description": "FAIR-Checker is a tool aimed at assessing FAIR principles and empowering data provider to enhance the quality of their digital resources. Data providers and consumers can check how FAIR are web resources. Developers can explore and inspect metadata exposed in web resources.",
            "homepage": "https://fair-checker.france-bioinformatique.fr",
            "biotoolsID": "fair-checker",
            "biotoolsCURIE": "biotools:fair-checker",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3316",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [
                "10.1186/s13326-023-00289-5"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:45:19.260708Z",
            "teams": [
                "IFB Core"
            ],
            "source_repository": null
        }
    ]
}