HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 233,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=220&ordering=documentation",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=documentation",
"results": [
{
"id": 17,
"name": "ECOD",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 16,
"name": "dbWFA",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 15,
"name": "Locus Specific Databases UMD",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 114,
"name": "GalaxEast",
"description": "GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses.",
"homepage": "http://www.galaxeast.fr/",
"biotoolsID": "GalaxEast",
"biotoolsCURIE": "biotools:GalaxEast",
"tool_type": [
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3391"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-01-24T09:54:41Z",
"teams": [],
"source_repository": null
},
{
"id": 12,
"name": "Listeriomics : Systems Biology of Listeria",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 11,
"name": "MacSyDB-TXSSdb",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 10,
"name": "Dog CNV database",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 14,
"name": "UMD-Predictor",
"description": "A tool that provides a combinatorial approach to identify potential pathogenic variations, that associates the following data: localization within the protein, conservation, biochemical properties of the mutant and wild-type residues, and the potential impact of the variation on mRNA.",
"homepage": "http://umd-predictor.eu",
"biotoolsID": "umd-predictor",
"biotoolsCURIE": "biotools:umd-predictor",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Developed_RD-Connect",
"RD-Connect",
"Rare Disease",
"ELIXIR-FR"
],
"scientific_topics": [
"http://edamontology.org/topic_3512",
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0199",
"http://edamontology.org/topic_3574",
"http://edamontology.org/topic_3063",
"http://edamontology.org/topic_0634"
],
"primary_publication": [
"10.1002/humu.22965"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Christophe Beroud",
"email": "christophe.beroud@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "David Salgado",
"email": "david.salgado@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Mature",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2019-07-24T20:06:47Z",
"teams": [],
"source_repository": null
},
{
"id": 260,
"name": "CulebrONT",
"description": "CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.",
"homepage": "https://github.com/SouthGreenPlatform/CulebrONT_pipeline",
"biotoolsID": "culebront",
"biotoolsCURIE": "biotools:culebront",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_0621"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-01-10T14:00:06.343876Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 7,
"name": "PhROGs",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 6,
"name": "SNiPlay",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 146,
"name": "fqtools",
"description": "A package that provides tools for efficient FASTQ files manipulation.",
"homepage": "https://bioweb.pasteur.fr/packages/pack@fqtools@1.1",
"biotoolsID": "fqtools",
"biotoolsCURIE": "biotools:fqtools",
"tool_type": [
"Suite"
],
"collection": [
"fqtools"
],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact",
"Maintainer"
],
"name": "Nicolas Joly",
"email": "njoly@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "Unlicense",
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2020-06-16T10:55:24Z",
"teams": [
"Pasteur HUB"
],
"source_repository": "ftp://ftp.pasteur.fr/pub/gensoft/projects/fqtools/README"
},
{
"id": 254,
"name": "MOGAMUN",
"description": "A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks.\n\nMOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., highly connected subnetworks with an overall deregulation) in MUltiplex biological Networks. For a detailed description of MOGAMUN check out the preprint https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1. All the expression datasets and networks that we used to obtain the results reported in our preprint are available in the GitHub repository https://github.com/elvanov/MOGAMUN-data.",
"homepage": "https://github.com/elvanov/MOGAMUN",
"biotoolsID": "mogamun",
"biotoolsCURIE": "biotools:mogamun",
"tool_type": [
"Library"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0121",
"http://edamontology.org/topic_0203",
"http://edamontology.org/topic_3170",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": null,
"email": "anais.baudot@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2021-02-26T09:22:38Z",
"teams": [
"Systems Biomedicine"
],
"source_repository": null
},
{
"id": 123,
"name": "DEPIB",
"description": "Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.",
"homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline",
"biotoolsID": "DEPIB",
"biotoolsCURIE": "biotools:DEPIB",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3308"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Provider",
"Support"
],
"name": "BiRD bioinformatics facility",
"email": "pf-bird@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Solenne Dumont",
"email": "solenne.dumont@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": "https://orcid.org/0000-0003-3237-7382",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "BiRD",
"email": "pf-bird@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Primary contact",
"Developer",
"Support"
],
"name": "Eric Charpentier",
"email": "eric.charpentier@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Audrey Bihouée",
"email": "audrey.bihouee@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": "https://orcid.org/0000-0002-8689-2083",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Erwan Delage",
"email": "erwan.delage@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Contributor"
],
"name": "Damien Vintache",
"email": "Damien.Vintache@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-24T14:40:03.286943Z",
"teams": [
"BiRD"
],
"source_repository": null
},
{
"id": 192,
"name": "EDAM-Browser",
"description": "The EDAM Browser is a client-side web-based visualization javascript widget of the EDAM ontology. \nThe EDAM Browser provides users a simple and performant interface to explore EDAM when annotating or searching for bioinformatics resources.\nIts goals are to help describing bio-related resources and service with EDAM, and to facilitate and foster community contributions to EDAM.",
"homepage": "https://github.com/IFB-ElixirFr/edam-browser",
"biotoolsID": "edam-browser",
"biotoolsCURIE": "biotools:edam-browser",
"tool_type": [
"Plug-in",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0605",
"http://edamontology.org/topic_0092"
],
"primary_publication": [
"10.21105/joss.00698"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Christophe Blanchet",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Hager Eldakroury",
"email": null,
"url": "https://github.com/HagerDakroury",
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Bryan Brancotte",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0001-8669-5525",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Maintainer"
],
"name": "Hervé Ménager",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0002-7552-1009",
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "MIT",
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-01-03T15:45:09.883379Z",
"teams": [
"Pasteur HUB",
"IFB Core"
],
"source_repository": "https://github.com/IFB-ElixirFr/edam-browser"
},
{
"id": 103,
"name": "Ciona robusta Anatomy and Development Ontology",
"description": "The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.",
"homepage": "https://www.aniseed.fr/aniseed/anatomy/find_devstage",
"biotoolsID": "Ciona_robusta_Anatomy_and_Development_Ontology",
"biotoolsCURIE": "biotools:Ciona_robusta_Anatomy_and_Development_Ontology",
"tool_type": [
"Ontology"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3064"
],
"primary_publication": [
"10.1101/gr.108175.110",
"10.1093/nar/gkv966"
],
"operating_system": [],
"tool_credit": [],
"tool_licence": "Freeware",
"documentation": null,
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2023-09-25T13:07:23.980491Z",
"teams": [],
"source_repository": null
},
{
"id": 278,
"name": "metabocloud",
"description": "Web portal to gather tools to improve metabolomic annotations through API microservices based on a cloud infrastructure.",
"homepage": "https://metabocloud.mesocentre.uca.fr/",
"biotoolsID": "metabocloud",
"biotoolsCURIE": "biotools:metabocloud",
"tool_type": [
"Bioinformatics portal"
],
"collection": [
"metabolomic platform"
],
"scientific_topics": [
"http://edamontology.org/topic_3172"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac",
"Windows"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Franck Giacomoni",
"email": "franck.giacomoni@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-6063-4214",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Provider"
],
"name": "Nadia Goué",
"email": "nadia.goue@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-2750-1473",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer",
"Contributor"
],
"name": "Nils Paulhe",
"email": "nils.paulhe@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-4550-1258",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Provider"
],
"name": "Thomas Bellembois",
"email": "thomas.bellembois@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0009-0001-6661-0691",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Faustine Souc",
"email": "faustine.souc@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0009-0004-9172-0632",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Antoine Mahul",
"email": "antoine.mahul@uca.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-9729-1603",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Emerging",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-01-22T10:11:29.320362Z",
"teams": [
"AuBi"
],
"source_repository": null
},
{
"id": 280,
"name": "Paraload",
"description": "Paraload is an original utility which ensures job distribution between thousands of processors, according to the type of the data to be analysed.",
"homepage": "ftp://doua.prabi.fr/pub/logiciel/paraload",
"biotoolsID": "Paraload",
"biotoolsCURIE": "biotools:Paraload",
"tool_type": [],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2019-11-06T12:00:30Z",
"teams": [
"PRABI-AMSB"
],
"source_repository": null
},
{
"id": 112,
"name": "CRISPRCas",
"description": "Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats.",
"homepage": "https://crisprcas.i2bc.paris-saclay.fr/",
"biotoolsID": "CRISPRCas",
"biotoolsCURIE": "biotools:CRISPRCas",
"tool_type": [
"Suite"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-02-07T06:24:26Z",
"teams": [],
"source_repository": null
},
{
"id": 98,
"name": "Genomicus-metazoa",
"description": "Genomicus-metazoa is a genome browser that enables users to navigate in metazoa genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
"homepage": "http://www.genomicus.biologie.ens.fr/genomicus-metazoa/",
"biotoolsID": "Genomicus-metazoa",
"biotoolsCURIE": "biotools:Genomicus-metazoa",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"GENOMICUS"
],
"scientific_topics": [
"http://edamontology.org/topic_3943",
"http://edamontology.org/topic_0194",
"http://edamontology.org/topic_3299",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_0622",
"http://edamontology.org/topic_0623"
],
"primary_publication": [
"10.1093/nar/gks1156"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Support"
],
"name": null,
"email": "genomicus-web@ens.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Hugues Roest Crollius",
"email": "hrc@ens.fr",
"url": "http://www.ibens.ens.fr/?rubrique43",
"orcidid": "http://orcid.org/0000-0002-8209-173X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Alexandra Louis",
"email": "alouis@biologie.ens.fr",
"url": "http://www.ibens.ens.fr/spip.php?article182",
"orcidid": "http://orcid.org/0000-0001-7032-5650",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:56:24.333237Z",
"teams": [
"PB-IBENS"
],
"source_repository": null
}
]
}