HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 233,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=220&ordering=cost",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=cost",
"results": [
{
"id": 162,
"name": "HCA (hydrophobic cluster analysis)",
"description": "The HCA method is based on the use of a bidimensional plot, called the HCA plot. The bidimensional plot is associated with an alpha helicoidal pitch (3.6 residue/turn, connectivity distance of 4) which has been shown to offer the best correspondence between clusters and regular secondary structures. Examination of the HCA plot of a protein sequence allow to easily identify globular regions from non globular ones and, in globular regions, to identify secondary structures.",
"homepage": "http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py?form=HCA#forms::HCA",
"biotoolsID": "hca",
"biotoolsCURIE": "biotools:hca",
"tool_type": [
"Web application"
],
"collection": [
"Proteomics"
],
"scientific_topics": [
"http://edamontology.org/topic_0121",
"http://edamontology.org/topic_3542"
],
"primary_publication": [
"10.1007/s000180050082"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Isabelle Callebaut",
"email": "Isabelle.Callebaut@lmcp.jussieu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HCA/",
"maturity": null,
"cost": null,
"unique_visits": 3200,
"citations": null,
"annual_visits": 10000,
"last_update": "2024-11-24T15:47:21.770746Z",
"teams": [
"RPBS"
],
"source_repository": null
},
{
"id": 111,
"name": "Galaxy Pasteur",
"description": "A wide variety of tools from the Galaxy instance of Institut Pasteur, France.",
"homepage": "https://galaxy.pasteur.fr/",
"biotoolsID": "Galaxy_Pasteur",
"biotoolsCURIE": "biotools:Galaxy_Pasteur",
"tool_type": [
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-03-16T18:06:05Z",
"teams": [],
"source_repository": null
},
{
"id": 2,
"name": "FatAndMuscleDB",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 133,
"name": "Jflow",
"description": "JavaScript based workflow management system, composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.",
"homepage": "http://jflow.toulouse.inra.fr/app/index.html",
"biotoolsID": "jflow",
"biotoolsCURIE": "biotools:jflow",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_3372"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "support.genopole@toulouse.inra.fr",
"url": "http://genoweb.toulouse.inra.fr:8090/app/index.html",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genoweb.toulouse.inra.fr:8090/app/jflow_quickstart.html",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:07:13.770953Z",
"teams": [],
"source_repository": null
},
{
"id": 143,
"name": "leBIBI",
"description": "Quick bioInformatic phylogeny of prokaryotes.",
"homepage": "https://umr5558-bibiserv.univ-lyon1.fr/lebibi/lebibi.cgi",
"biotoolsID": "leBIBI",
"biotoolsCURIE": "biotools:leBIBI",
"tool_type": [],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0084"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 154145,
"last_update": "2019-11-06T11:33:13Z",
"teams": [
"PRABI-Lyon-Grenoble"
],
"source_repository": null
},
{
"id": 42,
"name": "ISfinder",
"description": "It is a dedicated insertion sequence (IS) database which assigns names to individual ISs to maintain a coherent nomenclature, an IS repositaory including >3000 individual ISs from both bacteria and archaea and provides a basis for IS classification. Each IS is indexed in ISfinder with various associated pieces of information and classified into a group or family to provide some insight into its phylogeny.",
"homepage": "http://www-is.biotoul.fr",
"biotoolsID": "isfinder",
"biotoolsCURIE": "biotools:isfinder",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0798",
"http://edamontology.org/topic_3068",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0084",
"http://edamontology.org/topic_3168"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Patricia Siguier",
"email": "Patricia.Siguier@ibcg.biotoul.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://www-is.biotoul.fr/general_information.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-01-24T09:59:36.949842Z",
"teams": [],
"source_repository": null
},
{
"id": 72,
"name": "Insyght",
"description": "Browser that helps navigate among abundant homologies, syntenies and genes annotations.",
"homepage": "http://genome.jouy.inra.fr/Insyght",
"biotoolsID": "insyght",
"biotoolsCURIE": "biotools:insyght",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3301",
"http://edamontology.org/topic_3071"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "insyght@inra.fr",
"url": "http://genome.jouy.inra.fr/Insyght",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genome.jouy.inra.fr/Insyght_doc_online/",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:51:03.945288Z",
"teams": [],
"source_repository": null
},
{
"id": 131,
"name": "jvenn",
"description": "Plug-in for the jQuery Javascript library. It is an integrative tool for comparing lists with Venn Diagrams.",
"homepage": "http://bioinfo.genotoul.fr/jvenn/",
"biotoolsID": "jvenn",
"biotoolsCURIE": "biotools:jvenn",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0092",
"http://edamontology.org/topic_2269"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "support.genopole@toulouse.inra.fr",
"url": "http://bioinfo.genotoul.fr/jvenn/index.html",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://jvenn.toulouse.inra.fr/app/index.html",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T14:53:20.499445Z",
"teams": [],
"source_repository": null
},
{
"id": 121,
"name": "LoRDEC",
"description": "Program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads.",
"homepage": "http://www.atgc-montpellier.fr/lordec/",
"biotoolsID": "lordec",
"biotoolsCURIE": "biotools:lordec",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Eric Rivals",
"email": "rivals@lirmm.fr",
"url": "http://www.lirmm.fr/~rivals/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Leena Salmela",
"email": "leena.salmela@cs.Helsinki.FI",
"url": "https://www.cs.helsinki.fi/u/lmsalmel/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/lordec/",
"maturity": "Mature",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:01:03.046535Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 179,
"name": "MACSIMS",
"description": "Multiple alignment-based information management system that combines the advantages of both knowledge-based and ab initio sequence analysis methods.",
"homepage": "http://www.lbgi.fr/~julie/MACSIMS/",
"biotoolsID": "macsims",
"biotoolsCURIE": "biotools:macsims",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0092"
],
"primary_publication": [
"10.1186/1471-2105-7-318"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "IFB ELIXIR-FR",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Julie Thompson",
"email": "julie@igbmc.u-strasbg.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.lbgi.fr/~julie/MACSIMS/Documentation/",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:53:38.069848Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 145,
"name": "MacSyFinder",
"description": "Program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems to reflect these conserved features, and to allow their efficient detection.",
"homepage": "https://github.com/gem-pasteur/macsyfinder",
"biotoolsID": "macsyfinder",
"biotoolsCURIE": "biotools:macsyfinder",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [
"GEM Pasteur"
],
"scientific_topics": [
"http://edamontology.org/topic_0085"
],
"primary_publication": [
"10.1371/journal.pone.0110726",
"10.24072/pcjournal.250"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer"
],
"name": "Bertrand Néron",
"email": "bneron@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Eduardo Rocha",
"email": "eduardo.rocha@pasteur.fr",
"url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Bioinformatics and Biostatistics HUB",
"email": null,
"url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Microbial Evolutionary Genomics Unit",
"email": null,
"url": "https://research.pasteur.fr/en/team/microbial-evolutionary-genomics/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": "CNRS - UMR 352"
},
{
"type_role": [
"Developer"
],
"name": "Bertrand Néron",
"email": "bneron@pasteur.fr",
"url": "https://research.pasteur.fr/en/member/bertrand-neron/",
"orcidid": "https://orcid.org/0000-0002-0220-0482",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Eduardo Rocha",
"email": "eduardo.rocha@pasteur.fr",
"url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
"orcidid": "https://orcid.org/0000-0001-7704-822X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Bertrand Néron",
"email": "bneron@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Sophie Abby",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0002-5231-3346",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Institut Pasteur",
"email": null,
"url": "https://research.pasteur.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [],
"name": "C3BI",
"email": null,
"url": "https://research.pasteur.fr/en/center/c3bi/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "https://macsyfinder.readthedocs.io/en/latest/",
"maturity": "Mature",
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-24T13:49:36.708539Z",
"teams": [
"Pasteur HUB"
],
"source_repository": "https://github.com/gem-pasteur/macsyfinder"
},
{
"id": 81,
"name": "MatrixDB",
"description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
"homepage": "http://matrixdb.univ-lyon1.fr/",
"biotoolsID": "matrixdb",
"biotoolsCURIE": "biotools:matrixdb",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0078"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "MatrixDB Support",
"email": "sylvie.ricard-blum@univ-lyon1.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-9263-1851",
"gridid": null,
"typeEntity": "Person",
"note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
}
],
"tool_licence": null,
"documentation": "http://matrixdb.univ-lyon1.fr/",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:29:32.794189Z",
"teams": [],
"source_repository": null
},
{
"id": 75,
"name": "NAPP",
"description": "Nucleic Acid Phylogenetic Profile Database: classifies coding and non-coding sequences in a genome according to their pattern of conservation across other genomes.",
"homepage": "http://napp.u-psud.fr/",
"biotoolsID": "napp",
"biotoolsCURIE": "biotools:napp",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0077",
"http://edamontology.org/topic_0097",
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_3511",
"http://edamontology.org/topic_0082"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "NAPP Support",
"email": "napp.biologie@u-psud.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://rna.igmors.u-psud.fr/NAPP/Help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:05:27.630660Z",
"teams": [],
"source_repository": null
},
{
"id": 178,
"name": "NGS-QC Generator",
"description": "Comparative analysis between ChIP-seq and other enrichment-related NGS datasets requires prior characterization of their degree of technical similarity. The Galaxy tool NGS-QC Generator is a computational-based approach that infers quality indicators from the distribution of sequenced reads associated to a particular NGS profile. Such information is then used for comparative purposes and for defining strategies to improve the quality of sample-derived datasets.",
"homepage": "http://www.ngs-qc.org/",
"biotoolsID": "ngs-qc_generator",
"biotoolsCURIE": "biotools:ngs-qc_generator",
"tool_type": [
"Web application"
],
"collection": [
"Animal and Crop Genomics"
],
"scientific_topics": [
"http://edamontology.org/topic_3572",
"http://edamontology.org/topic_3169"
],
"primary_publication": [
"10.1007/978-1-4939-3578-9_13"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "contact@ngs-qc.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-2.0",
"documentation": "http://www.ngs-qc.org/tutorial.php",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T14:05:15.865852Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 140,
"name": "NucleusJ",
"description": "Simple and user-friendly ImageJ plugin dedicated to the characterization of nuclear morphology and chromatin organization in 3D.",
"homepage": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start",
"biotoolsID": "nucleusj",
"biotoolsCURIE": "biotools:nucleusj",
"tool_type": [
"Desktop application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0097",
"http://edamontology.org/topic_2229",
"http://edamontology.org/topic_3382"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Axel Poulet",
"email": "pouletaxel@gmail.com",
"url": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#authors",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#usage",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:54:14.614349Z",
"teams": [
"AuBi"
],
"source_repository": null
},
{
"id": 38,
"name": "MoonDB",
"description": "MoonDB is a database containing predicted Extreme Multifunctional (EMF) proteins (i.e. proteins with several unrelated functions), as well as a set of manually curated moonlighting proteins. Moonlighting proteins are a subclass of multifunctional proteins.",
"homepage": "http://moondb.hb.univ-amu.fr/",
"biotoolsID": "MoonDB",
"biotoolsCURIE": "biotools:MoonDB",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0623"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2019-11-06T11:40:39Z",
"teams": [
"TAGC-BU"
],
"source_repository": null
},
{
"id": 73,
"name": "mosaic",
"description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
"homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
"biotoolsID": "mosaic",
"biotoolsCURIE": "biotools:mosaic",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3056",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leithen K. M’Gonigle",
"email": "mgonigle@zoology.ubc.ca",
"url": "http://www.zoology.ubc.ca/~fitzjohn",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:20:53.826983Z",
"teams": [],
"source_repository": null
},
{
"id": 167,
"name": "MPscan",
"description": "MPscan (multi-pattern scan) is a program for mapping short reads (<30bp) exactly on a set of reference sequences (eg, a genome) without indexing the reference. MPscan performs only exact mapping (no substitution, nor indels), is fast (optimal complexity), and easy to use.",
"homepage": "http://www.atgc-montpellier.fr/mpscan/",
"biotoolsID": "mpscan",
"biotoolsCURIE": "biotools:mpscan",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3308",
"http://edamontology.org/topic_0622"
],
"primary_publication": [
"10.1007/978-3-642-04241-6_21"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Vincent Lefort",
"email": "Vincent.Lefort@lirmm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/download/papers/mpscan_manual_2008.pdf",
"maturity": null,
"cost": null,
"unique_visits": 100,
"citations": null,
"annual_visits": 0,
"last_update": "2021-04-22T06:40:43Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 187,
"name": "Nebula",
"description": "Web service powered by Galaxy which allows users (Bioinformaticians as far as Biologists) to analyze their ChIP-seq data.",
"homepage": "https://nebula.curie.fr/",
"biotoolsID": "nebula",
"biotoolsCURIE": "biotools:nebula",
"tool_type": [
"Web application"
],
"collection": [
"Nebula"
],
"scientific_topics": [
"http://edamontology.org/topic_3365",
"http://edamontology.org/topic_3169",
"http://edamontology.org/topic_3125"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "galaxy.contact@curie.fr",
"url": "http://bioinfo-out.curie.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://nebula.curie.fr/static/nebula_tutorial.pdf",
"maturity": null,
"cost": null,
"unique_visits": 7384,
"citations": null,
"annual_visits": 2815653,
"last_update": "2024-11-25T14:22:06.393280Z",
"teams": [
"Institut Curie - Bioinformatique"
],
"source_repository": null
},
{
"id": 157,
"name": "OCG",
"description": "Creates an overlapping class system from an unweighted simple graph G = (V,E).OCG is essentially a hierarchical ascending algorithm. By default, it will fuse the initial classes until further fusions do not increase the modularity but other options are available.",
"homepage": "http://tagc.univ-mrs.fr/tagc/index.php/software/17",
"biotoolsID": "ocg",
"biotoolsCURIE": "biotools:ocg",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_1775"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Brun C",
"email": "brun@tagc.univ-mrs.fr",
"url": "http://tagc.univ-mrs.fr/tagc/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://tagc.univ-mrs.fr/tagc/index.php/software/17",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T16:02:04.280293Z",
"teams": [
"TAGC-BU"
],
"source_repository": null
}
]
}