HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 211,
"next": null,
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=-last_update",
"results": [
{
"id": 154,
"name": "CompPhy",
"description": "Web-based collaborative platform for comparing phylogenies.",
"homepage": "http://www.atgc-montpellier.fr/compphy/",
"biotoolsID": "compphy",
"biotoolsCURIE": "biotools:compphy",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_3056"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact form",
"email": null,
"url": "http://www.atgc-montpellier.fr/compphy/?p=contact",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/compphy/?p=userguide",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:57Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 141,
"name": "DroPNet",
"description": "DroPNet is a webserver for generating and analyzing Drosophila protein-protein interaction networks. Input data is a list of genes from an experiment such as RNAi screen.",
"homepage": "http://dropnet.isima.fr",
"biotoolsID": "dropnet",
"biotoolsCURIE": "biotools:dropnet",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_3957",
"http://edamontology.org/topic_3523",
"http://edamontology.org/topic_3678"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "RENAUD Yoan",
"email": "renaud@isima.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://dropnet.gred-clermont.fr/DroPNet_project/UserManual.pdf",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 72000,
"last_update": "2018-12-10T12:58:56Z",
"teams": [
"AuBi"
],
"source_repository": null
},
{
"id": 9,
"name": "remap",
"description": "Display restriction enzyme binding sites in a nucleotide sequence.",
"homepage": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
"biotoolsID": "remap",
"biotoolsCURIE": "biotools:remap",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [
"EMBOSS"
],
"scientific_topics": [
"http://edamontology.org/topic_3125"
],
"primary_publication": [
"10.1016/S0168-9525(00)02024-2"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "EMBOSS Contributors",
"email": null,
"url": "http://emboss.open-bio.org/html/use/pr01s01.html",
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "EMBL-EBI",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "UK MRC",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Wellcome Trust",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "UK BBSRC",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "EMBOSS",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Support"
],
"name": "EMBOSS",
"email": "emboss@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "emboss@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "emboss-bug@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-10T12:58:55Z",
"teams": [
"TAGC-BU"
],
"source_repository": "http://emboss.open-bio.org/html/adm/ch01s01.html"
},
{
"id": 171,
"name": "RNAbrowse",
"description": "The tool permits sequencing facilities and, even small, bioinformatic teams to give a user-friendly access to RNA-Seq de novo results, helping biologists to analyse and extract meaningful information from their data.",
"homepage": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
"biotoolsID": "rnabrowse",
"biotoolsCURIE": "biotools:rnabrowse",
"tool_type": [
"Command-line tool",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0099",
"http://edamontology.org/topic_3170",
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_0219"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
"maturity": null,
"cost": null,
"unique_visits": 2250,
"citations": null,
"annual_visits": 4720,
"last_update": "2018-12-10T12:58:51Z",
"teams": [],
"source_repository": null
},
{
"id": 170,
"name": "RNAspace",
"description": "A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.",
"homepage": "http://www.rnaspace.org/",
"biotoolsID": "rnaspace",
"biotoolsCURIE": "biotools:rnaspace",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_0099",
"http://edamontology.org/topic_0219"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "Marie-Josee.Cros@inra.fr",
"url": "http://rnaspace.org/partners",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.rnaspace.org/help/#help1",
"maturity": null,
"cost": null,
"unique_visits": 14318,
"citations": null,
"annual_visits": 17558,
"last_update": "2018-12-10T12:58:50Z",
"teams": [],
"source_repository": null
},
{
"id": 128,
"name": "Tedna",
"description": "A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.",
"homepage": "http://urgi.versailles.inra.fr/Tools/Tedna",
"biotoolsID": "tedna",
"biotoolsCURIE": "biotools:tedna",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0654"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "urgi-contact@versailles.inra.fr",
"url": "https://urgi.versailles.inra.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf",
"maturity": null,
"cost": null,
"unique_visits": 557,
"citations": null,
"annual_visits": 1872,
"last_update": "2018-12-10T12:58:49Z",
"teams": [],
"source_repository": null
},
{
"id": 54,
"name": "AphidBase",
"description": "An aphid genome database.",
"homepage": "http://aphidbase.com/",
"biotoolsID": "aphidbase",
"biotoolsCURIE": "biotools:aphidbase",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0622"
],
"primary_publication": [
"10.1111/j.1365-2583.2009.00930.x"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "BIPAA platform",
"email": "bipaa@rennes.inra.fr",
"url": "http://www.inra.fr/bipaa",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://bipaa.genouest.org/is/aphidbase/",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-10T12:58:49Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 207,
"name": "Commet",
"description": "This software provides a global similarity overview between all datasets of a large metagenomic project.",
"homepage": "https://colibread.inria.fr/software/commet/",
"biotoolsID": "commet",
"biotoolsCURIE": "biotools:commet",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [
"10.1109/BIBM.2014.6999135"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Pierre Peterlongo",
"email": "pierre.peterlongo@inria.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/pierrepeterlongo/commet/blob/master/doc/commet_user_guide.pdf",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-10T12:58:49Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 134,
"name": "Protomata",
"description": "Motif search and discovery in protein sequences.",
"homepage": "http://tools.genouest.org/tools/protomata/",
"biotoolsID": "protomata",
"biotoolsCURIE": "biotools:protomata",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [
"10.1007/11564096_50"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "GenOuest",
"email": "support@genouest.org",
"url": "http://www.genouest.org",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "CECILL-2.0",
"documentation": "http://tools.genouest.org/tools/protomata/help",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:49Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 173,
"name": "Tango",
"description": "A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.",
"homepage": "http://tango.crg.es/",
"biotoolsID": "tango",
"biotoolsCURIE": "biotools:tango",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_3510",
"http://edamontology.org/topic_0081"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://tango.crg.es/support.jsp",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://tango.crg.es/Tango_Handbook.pdf",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:45Z",
"teams": [
"CBiB"
],
"source_repository": null
},
{
"id": 175,
"name": "Logol",
"description": "Pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic).",
"homepage": "http://logol.genouest.org",
"biotoolsID": "logol",
"biotoolsCURIE": "biotools:logol",
"tool_type": [
"Command-line tool",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0160"
],
"primary_publication": [
"10.1007/978-3-319-09192-1_4"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "GenOuest",
"email": "support@genouest.org",
"url": "http://www.genouest.org",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "CECILL-2.0",
"documentation": "http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=LOGOL",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:34Z",
"teams": [
"GenOuest"
],
"source_repository": null
}
]
}