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                "http://edamontology.org/topic_3300",
                "http://edamontology.org/topic_3673",
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                "Linux"
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                    "name": "Hugues Roest Crollius",
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                    "name": "Camille Berthelot",
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            "teams": [
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            "source_repository": "https://github.com/DyogenIBENS/FINSURF/"
        },
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            "name": "Galaxy",
            "description": "Open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.",
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            "biotoolsID": "galaxy",
            "biotoolsCURIE": "biotools:galaxy",
            "tool_type": [
                "Bioinformatics portal",
                "Web API",
                "Web application",
                "Workflow"
            ],
            "collection": [
                "Animal and Crop Genomics",
                "Galaxy"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3673",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [
                "10.1093/nar/gkw343",
                "10.1093/nar/gkac247"
            ],
            "operating_system": [
                "Linux",
                "Windows",
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            ],
            "tool_credit": [
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                },
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                    ],
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                    "email": null,
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            ],
            "tool_licence": "AFL-3.0",
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            "annual_visits": 0,
            "last_update": "2024-11-24T14:46:57.861339Z",
            "teams": [
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            ],
            "source_repository": "https://github.com/galaxyproject/galaxy"
        },
        {
            "id": 269,
            "name": "Galaxy France",
            "description": "Galaxy is an open-source platform for FAIR data analysis that enables users to: i) use tools from various domains (that can be plugged into workflows) through its graphical web interface, ii) run code in interactive environments (RStudio, Jupyter, ...) along with other tools or workflows, iii) manage data by sharing and publishing results, workflows, and visualizations, iv) ensure reproducibility by capturing the necessary information to repeat and understand data analyses.\n\nUseGalaxy.fr is the national Galaxy instance for ELIXIR-FR.",
            "homepage": "https://usegalaxy.fr/",
            "biotoolsID": "galaxy_france",
            "biotoolsCURIE": "biotools:galaxy_france",
            "tool_type": [],
            "collection": [
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            ],
            "scientific_topics": [
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                "http://edamontology.org/topic_3474",
                "http://edamontology.org/topic_0121",
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                "http://edamontology.org/topic_3172",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [],
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                {
                    "type_role": [
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                    ],
                    "name": "IFB - Institut Français de Bioinformatique",
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                    "orcidid": null,
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                {
                    "type_role": [
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                    "name": "ANR RENABI",
                    "email": null,
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                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
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                {
                    "type_role": [
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                    "name": "IFB Core Cluster",
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                    "url": "https://www.france-bioinformatique.fr/en/ifb-core-cluster/",
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                    "gridid": null,
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            "citations": null,
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            "last_update": "2024-04-24T09:37:17.765772Z",
            "teams": [
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                "IFB Core"
            ],
            "source_repository": "https://gitlab.com/ifb-elixirfr/usegalaxy-fr/infrastructure/"
        },
        {
            "id": 107,
            "name": "GENOMICUS",
            "description": "Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus/",
            "biotoolsID": "GENOMICUS",
            "biotoolsCURIE": "biotools:GENOMICUS",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
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                "10.1093/nar/gkab1091"
            ],
            "operating_system": [],
            "tool_credit": [
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                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
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                },
                {
                    "type_role": [],
                    "name": "PB-IBENS",
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                    "gridid": null,
                    "typeEntity": "Person",
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                    "type_role": [
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                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "IBENS - DYOGEN Team",
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                    "url": "http://www.ibens.ens.fr/?rubrique43&lang=en",
                    "orcidid": null,
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                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.youtube.com/watch?v=CokUh3fUbGQ",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-03-06T14:10:23.175189Z",
            "teams": [
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}