GET /api/tool/?format=api&offset=20&ordering=cost
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=40&ordering=cost",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&ordering=cost",
    "results": [
        {
            "id": 282,
            "name": "easy16S",
            "description": "Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.",
            "homepage": "https://easy16s.migale.inrae.fr/",
            "biotoolsID": "easy16s",
            "biotoolsCURIE": "biotools:easy16s",
            "tool_type": [],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [
                "10.21105/joss.06704"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Cédric Midoux",
                    "email": "cedric.midoux@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-7964-0929",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://easy16s.migale.inrae.fr/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-11T14:36:21.065324Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": "https://doi.org/10.57745/ZN1HXQ"
        },
        {
            "id": 207,
            "name": "Commet",
            "description": "This software provides a global similarity overview between all datasets of a large metagenomic project.",
            "homepage": "https://colibread.inria.fr/software/commet/",
            "biotoolsID": "commet",
            "biotoolsCURIE": "biotools:commet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1109/BIBM.2014.6999135"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Peterlongo",
                    "email": "pierre.peterlongo@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/pierrepeterlongo/commet/blob/master/doc/commet_user_guide.pdf",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 87,
            "name": "Genetic and Genomic Information System (GnpIS)",
            "description": "GnpIS is an integrative and multi-species information system dedicated to plants, including forest trees. It handles various types of data, focusing on genetic resources and phenomics. It allows researchers from the Plant community to access and cross-reference genetic data (accessions, phenotypes, polymorphisms, markers and QTLs) and genomic data (sequences, physical maps, genome annotations) for species of agronomic and forestry interest.\nAccessible via a public web portal, GnpIS enables different types of data to be managed, browsed and retrieved via specialized search tools and web services.\nGnpIS is used by the French National Research Institute for Agriculture, Food and Environment (INRAE) and its partners in major national and international projects.",
            "homepage": "https://urgi.versailles.inrae.fr/gnpis",
            "biotoolsID": "gnpis",
            "biotoolsCURIE": "biotools:gnpis",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_0780"
            ],
            "primary_publication": [
                "10.1093/database/bat058",
                "10.1007/978-1-4939-6658-5_5",
                "10.3835/plantgenome2015.06.0038"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "URGI helpdesk",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "urgi-contact@versailles.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": "https://urgi.versailles.inrae.fr/Data-Services/Data-Access/GnpIS",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-19T17:15:16.754031Z",
            "teams": [
                "URGI"
            ],
            "source_repository": "https://forge.inrae.fr/urgi/is/gnpis"
        },
        {
            "id": 36,
            "name": "Banana Genome Hub",
            "description": "A Next-Generation Information System for Musa genomics",
            "homepage": "https://banana-genome-hub.southgreen.fr/",
            "biotoolsID": "Banana_Genome_Hub",
            "biotoolsCURIE": "biotools:Banana_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaëtan Droc",
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Mathieu Rouard",
                    "email": "m.rouard@cgiar.org",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioversity International",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "ANR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://banana-genome-hub.southgreen.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:38.690746Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 103,
            "name": "Ciona robusta Anatomy and Development Ontology",
            "description": "The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.",
            "homepage": "https://www.aniseed.fr/aniseed/anatomy/find_devstage",
            "biotoolsID": "Ciona_robusta_Anatomy_and_Development_Ontology",
            "biotoolsCURIE": "biotools:Ciona_robusta_Anatomy_and_Development_Ontology",
            "tool_type": [
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3064"
            ],
            "primary_publication": [
                "10.1101/gr.108175.110",
                "10.1093/nar/gkv966"
            ],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": "Freeware",
            "documentation": null,
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-09-25T13:07:23.980491Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 286,
            "name": "pyBRAvo",
            "description": "From a list of genes, pyBRAvo produces upstream regulation or signaling networks. pyBRAvo internally leverages the BioPAX ontolgy, the PathwayCommons knowledge graph, and the SPARQL semantic web query language. pyBRAvo can be used through either a Jupyter notebook, or a command line interface.",
            "homepage": "https://github.com/pyBRAvo/pyBRAvo",
            "biotoolsID": "pybravo",
            "biotoolsCURIE": "biotools:pybravo",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2259",
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [
                "10.1093/database/baaa113"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Developer"
                    ],
                    "name": "Alban Gaignard",
                    "email": "alban.gaignard@univ-nantes.fr",
                    "url": "http://albangaignard.github.io/",
                    "orcidid": "https://orcid.org/0000-0002-3597-8557",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Marie Lefebvre",
                    "email": "marie.lefebvre@inrae.fr",
                    "url": "https://mariebvr.github.io/marieBvr/",
                    "orcidid": "https://orcid.org/0000-0002-3093-5873",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Maxime Folschette",
                    "email": "maxime.folschette@centralelille.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Jeremy Bourdon",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6674-8626",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Carito Guziolowski",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5192-0745",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "SyMeTRIC",
                    "email": null,
                    "url": "http://symetric.univ-nantes.fr/doku.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider",
                        "Support"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/pyBRAvo/pyBRAvo",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-05-31T14:22:33.309326Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": "https://github.com/pyBRAvo/pyBRAvo"
        },
        {
            "id": 123,
            "name": "DEPIB",
            "description": "Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline",
            "biotoolsID": "DEPIB",
            "biotoolsCURIE": "biotools:DEPIB",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider",
                        "Support"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Support"
                    ],
                    "name": "Eric Charpentier",
                    "email": "eric.charpentier@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Erwan Delage",
                    "email": "erwan.delage@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Contributor"
                    ],
                    "name": "Damien Vintache",
                    "email": "Damien.Vintache@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Solenne Dumont",
                    "email": "solenne.dumont@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0003-3237-7382",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:40:03.286943Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 56,
            "name": "CyanoLyase",
            "description": "Manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases.",
            "homepage": "http://cyanolyase.genouest.org/",
            "biotoolsID": "cyanolyase",
            "biotoolsCURIE": "biotools:cyanolyase",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/gks1091"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://cyanolyase.genouest.org/help",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:06:21.263559Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 57,
            "name": "AnnotQTL",
            "description": "Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.",
            "homepage": "http://annotqtl.genouest.org/",
            "biotoolsID": "annotqtl",
            "biotoolsCURIE": "biotools:annotqtl",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0085"
            ],
            "primary_publication": [
                "10.1093/nar/gkr361"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://annotqtl.genouest.org/tutorial",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:06:26.428724Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 54,
            "name": "AphidBase",
            "description": "An aphid genome database.",
            "homepage": "http://aphidbase.com/",
            "biotoolsID": "aphidbase",
            "biotoolsCURIE": "biotools:aphidbase",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [
                "10.1111/j.1365-2583.2009.00930.x"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "BIPAA platform",
                    "email": "bipaa@rennes.inra.fr",
                    "url": "http://www.inra.fr/bipaa",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bipaa.genouest.org/is/aphidbase/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 144,
            "name": "SynTView",
            "description": "Comparative and interactive viewer for microbial genomes, designed to run as either a web-based tool (Flash technology) or a desktop application (AIR environment). The basis of the program is a generic genome browser with sub-maps holding information about genomic objects. The software is characterized by the presentation of syntenic organisations of microbial genomes and the visualization of polymorphism data along these genomes; these features are accessible to the user in an integrated way.",
            "homepage": "http://genopole.pasteur.fr/SynTView/",
            "biotoolsID": "syntview",
            "biotoolsCURIE": "biotools:syntview",
            "tool_type": [
                "Web application",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [
                "10.1186/1471-2105-14-277"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "plechat@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "LGPL-3.0",
            "documentation": "http://hub18.hosting.pasteur.fr/SynTView/documentation/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2021-05-19T14:52:04Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": null
        },
        {
            "id": 238,
            "name": "TOXsIgN",
            "description": "The TOXicogenomic sIgNature (TOXsIgN) is a cross-species resource that supports online submission, storage, and retrieval of TOXicogenomic sIgNatures. TOXsIgN aims at complementing existing resources by acting as a distribution hub for the community. One of its unique features is its ability to archive heterogeneous data. TOXsIgN thus allows users to upload lists of genes positively (overexpressed for transcriptomic assays) affected and negatively (underexpressed) affected from distinct –omics experiments (e.g., transcriptomics, proteomics, or epigenomics). It also provides users with a working environment containing a powerful search engine as well as bioinformatics/biostatistics modules that enable cross-species and cross-technology signature comparisons or enrichment analyses. TOXsIgN is thus intended to serve as a warehouse for toxicogenomics and predictive toxicology tools simultaneously based on and able to analyze the overall set of signatures deposited by the community.",
            "homepage": "http://toxsign.genouest.org",
            "biotoolsID": "toxsign",
            "biotoolsCURIE": "biotools:toxsign",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2840"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Chalmel Frédéric",
                    "email": "frederic.chalmel@univ-rennes1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-09-28T08:55:30Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 239,
            "name": "ACDtool",
            "description": "Web-server for the generic analysis of large data sets of counts.",
            "homepage": "https://www.igs.cnrs-mrs.fr/acdtool/",
            "biotoolsID": "acdtool",
            "biotoolsCURIE": "biotools:acdtool",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2269"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-10T09:25:24.490675Z",
            "teams": [
                "PACA-Bioinfo"
            ],
            "source_repository": null
        },
        {
            "id": 190,
            "name": "CRISPRFinder",
            "description": "Detects this family of direct repeats found in the DNA of many bacteria and archaea.",
            "homepage": "https://crisprcas.i2bc.paris-saclay.fr/CrisprCasFinder/Index",
            "biotoolsID": "crisprfinder",
            "biotoolsCURIE": "biotools:crisprfinder",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "CRISPR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_0157",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie Touchon",
                    "email": "mtouchon@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Unlicense",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 480,
            "citations": null,
            "annual_visits": 2273,
            "last_update": "2024-11-24T21:05:00.924973Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 288,
            "name": "MAGNETO",
            "description": "An automated workflow for genome-resolved metagenomics",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto",
            "biotoolsID": "magneto",
            "biotoolsCURIE": "biotools:magneto",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3050",
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Samuel Chaffron",
                    "email": "samuel.chaffron@ls2n.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Benjamin Churcheward",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Audrey Bihouée",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Guillaume Fertin",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Hugo Lefeuvre",
                    "email": "hugo.lefeuvre@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-02-24T16:29:20.503951Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto"
        },
        {
            "id": 263,
            "name": "TrEMOLO",
            "description": "Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.",
            "homepage": "https://github.com/DrosophilaGenomeEvolution/TrEMOLO",
            "biotoolsID": "tremolo",
            "biotoolsCURIE": "biotools:tremolo",
            "tool_type": [
                "Command-line tool",
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3175",
                "http://edamontology.org/topic_0798",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [
                "10.1186/s13059-023-02911-2"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Anna-Sophie Fiston-Lavier",
                    "email": "anna-sophie.fiston-lavier@umontpellier.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-7306-6532",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Séverine Chambeyron",
                    "email": "severine.chambeyron@igh.cnrs.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-2775-6556",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:41:13.039486Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://dataverse.ird.fr/dataverse/tremolo_data"
        },
        {
            "id": 125,
            "name": "Gigwa",
            "description": "The Gigwa application, which stands for “Genotype Investigator for Genome-Wide Analyses”, provides an easy and intuitive way to explore large amounts of genotyping data by filtering it not only on the basis of variant features, including functional annotations, but also matching genotype patterns. It is a fairly lightweight, web-based, platform-independent solution that may be deployed on a workstation or as a data portal. It allows to feed a MongoDB database with VCF, PLINK or HapMap files containing up to tens of billions of genotypes, and provides a user-friendly interface to filter data in real time. Gigwa provides the means to export filtered data into several popular formats and features connectivity not only with online genomic tools, but also with standalone software such as FlapJack or IGV. Additionnally, Gigwa-hosted datasets are interoperable via two standard REST APIs: GA4GH and BrAPI.",
            "homepage": "http://www.southgreen.fr/content/gigwa",
            "biotoolsID": "Gigwa",
            "biotoolsCURIE": "biotools:Gigwa",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [
                "10.1093/GIGASCIENCE/GIZ051",
                "10.1186/s13742-016-0131-8"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Guilhem Sempéré",
                    "email": "guilhem.sempere@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-7429-2091",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gigwa@cirad.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "http://gigwa.southgreen.fr/gigwa/docs/gigwa_docs.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2020-09-14T08:25:17Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://github.com/SouthGreenPlatform/Gigwa2"
        },
        {
            "id": 247,
            "name": "metagWGS",
            "description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
            "homepage": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs",
            "biotoolsID": "metagwgs",
            "biotoolsCURIE": "biotools:metagwgs",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3391",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Claire Hoede",
                    "email": "claire.hoede@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5054-7731",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenoToul bioinformatics facility",
                    "email": null,
                    "url": "http://bioinfo.genotoul.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://genotoul-bioinfo.pages-forge.inrae.fr/metagwgs/master/index.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2026-06-23T04:42:34.408916Z",
            "teams": [
                "Genotoul-bioinfo"
            ],
            "source_repository": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs"
        },
        {
            "id": 274,
            "name": "orsum",
            "description": "A Python package for filtering and comparing enrichment analyses using a simple principle.",
            "homepage": "https://anaconda.org/bioconda/orsum",
            "biotoolsID": "orsum",
            "biotoolsCURIE": "biotools:orsum",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3407",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0634"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": "ozan.ozisik@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": "anais.baudot@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-10-29T06:24:51.903827Z",
            "teams": [],
            "source_repository": "https://github.com/ozanozisik/orsum/"
        },
        {
            "id": 205,
            "name": "DiscoSNP",
            "description": "This software is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).",
            "homepage": "https://colibread.inria.fr/software/discosnp/",
            "biotoolsID": "discosnp",
            "biotoolsCURIE": "biotools:discosnp",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_0199",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [
                "10.1093/nar/gku1187"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Peterlongo",
                    "email": "pierre.peterlongo@inria.fr",
                    "url": "https://colibread.inria.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://colibread.inria.fr/software/discosnp/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:25:58.458039Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        }
    ]
}