GET /api/tool/?format=api&offset=180&ordering=maturity
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=200&ordering=maturity",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=maturity",
    "results": [
        {
            "id": 264,
            "name": "PanExplorer",
            "description": "A web-based tool for exploratory analysis and visualization of bacterial pan-genomes.",
            "homepage": "http://panexplorer.southgreen.fr",
            "biotoolsID": "panexplorer",
            "biotoolsCURIE": "biotools:panexplorer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3382",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3175"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Alexis Dereeper",
                    "email": "alexis.dereeper@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8120-8409",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Damien F Meyer",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Marilyne Summo",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T15:26:52.796766Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://github.com/SouthGreenPlatform/PanExplorer"
        },
        {
            "id": 265,
            "name": "MetamORF",
            "description": "A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta-analysis.\n\nMetamORF: A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta analysis.",
            "homepage": "http://metamorf.hb.univ-amu.fr/",
            "biotoolsID": "metamorf",
            "biotoolsCURIE": "biotools:metamorf",
            "tool_type": [
                "Command-line tool",
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0659"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Christine Brun",
                    "email": "christine-g.brun@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-22T07:55:26Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": "https://github.com/TAGC-NetworkBiology/MetamORF"
        },
        {
            "id": 266,
            "name": "LedPred",
            "description": "This package creates a predictive model of regulatory sequences used to score unknown sequences based on the content of DNA motifs, NGS peaks and signals and other numerical scores of the sequences using supervised classification. It contains a workflow based on the support vector machine (SVM) algorithm that maps features to sequences.",
            "homepage": "http://bioconductor.org/packages/release/bioc/html/LedPred.html",
            "biotoolsID": "ledpred",
            "biotoolsCURIE": "biotools:ledpred",
            "tool_type": [
                "Command-line tool",
                "Library"
            ],
            "collection": [
                "BioConductor"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_3474"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btv705"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Aitor Gonzalez",
                    "email": "aitor.gonzalez@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioconductor.org/packages/release/bioc/html/LedPred.html",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T15:20:13.683529Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": null
        },
        {
            "id": 5,
            "name": "AgroLD",
            "description": "The RDF Knowledge-based Database for plant molecular networks.",
            "homepage": "http://agrold.southgreen.fr/agrold/",
            "biotoolsID": "AgroLD",
            "biotoolsCURIE": "biotools:AgroLD",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-11-05T14:52:28Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 268,
            "name": "ChagasDB",
            "description": "Manual-curated database regrouping published results referenced in Pubmed.",
            "homepage": "https://chagasdb.tagc.univ-amu.fr",
            "biotoolsID": "chagasdb",
            "biotoolsCURIE": "biotools:chagasdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3334",
                "http://edamontology.org/topic_3305",
                "http://edamontology.org/topic_3421"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Edecio Cunha-Neto",
                    "email": "edecunha@gmail.com",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3699-3345",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Lionel Spinelli",
                    "email": "lionel.spinelli@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9228-8141",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Christophe Chevillard",
                    "email": "christophe.chevillard@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-5269-8813",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:25:34.821693Z",
            "teams": [],
            "source_repository": "https://github.com/TAGC-ComplexDisease/ChagasDB"
        },
        {
            "id": 272,
            "name": "IMGT-ONTOLOGY",
            "description": "IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, \"IDENTIFICATION\", \"CLASSIFICATION\", \"DESCRIPTION\", \"NUMEROTATION\", \"LOCALIZATION\", \"ORIENTATION\" and \"OBTENTION\". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized.",
            "homepage": "http://www.imgt.org/IMGTindex/ontology.php",
            "biotoolsID": "IMGT-ONTOLOGY",
            "biotoolsCURIE": "biotools:IMGT-ONTOLOGY",
            "tool_type": [
                "Ontology"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3930",
                "http://edamontology.org/topic_3948"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Patrice Duroux",
                    "email": "patrice.duroux@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Sofia Kossida",
                    "email": "sofia.kossida@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Véronique Giudicelli",
                    "email": "veronique.giudicelli@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie-Paule Lefranc",
                    "email": "marie-paule.lefranc@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/IMGTindex/ontology.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:20.932052Z",
            "teams": [
                "IMGT"
            ],
            "source_repository": "http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY"
        },
        {
            "id": 154,
            "name": "CompPhy",
            "description": "Web-based collaborative platform for comparing phylogenies.",
            "homepage": "http://www.atgc-montpellier.fr/compphy/",
            "biotoolsID": "compphy",
            "biotoolsCURIE": "biotools:compphy",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_3056"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact form",
                    "email": null,
                    "url": "http://www.atgc-montpellier.fr/compphy/?p=contact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/compphy/?p=userguide",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:57Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 274,
            "name": "orsum",
            "description": "A Python package for filtering and comparing enrichment analyses using a simple principle.",
            "homepage": "https://anaconda.org/bioconda/orsum",
            "biotoolsID": "orsum",
            "biotoolsCURIE": "biotools:orsum",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3407"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": "ozan.ozisik@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": "anais.baudot@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-10-29T06:24:51.903827Z",
            "teams": [],
            "source_repository": "https://github.com/ozanozisik/orsum/"
        },
        {
            "id": 112,
            "name": "CRISPRCas",
            "description": "Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats.",
            "homepage": "https://crisprcas.i2bc.paris-saclay.fr/",
            "biotoolsID": "CRISPRCas",
            "biotoolsCURIE": "biotools:CRISPRCas",
            "tool_type": [
                "Suite"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-02-07T06:24:26Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 276,
            "name": "ODAMNet",
            "description": "A Python package to study molecular relationship between environmental factors and rare diseases.",
            "homepage": "https://pypi.org/project/ODAMNet/",
            "biotoolsID": "odamnet",
            "biotoolsCURIE": "biotools:odamnet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": "morgane.terezol@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4090-2573",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-0885-7933",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://odamnet.readthedocs.io/en/latest/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:02:02.850639Z",
            "teams": [],
            "source_repository": "https://github.com/MOohTus/ODAMNet"
        },
        {
            "id": 181,
            "name": "CARNAC",
            "description": "Server which predicts conserved secondary structure elements of homologous RNAs.  The input of a set of RNA sequences are not required to be previously aligned.",
            "homepage": "http://bioinfo.lifl.fr/carnac",
            "biotoolsID": "carnac",
            "biotoolsCURIE": "biotools:carnac",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0082",
                "http://edamontology.org/topic_0781"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Carnac team",
                    "email": "carnac@univ-lille1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioinfo.lifl.fr/carnac/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:52:06.002489Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 180,
            "name": "Assemble2",
            "description": "Design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera.",
            "homepage": "http://bioinformatics.org/assemble/",
            "biotoolsID": "assemble2",
            "biotoolsCURIE": "biotools:assemble2",
            "tool_type": [
                "Web API"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btq321"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "BioCatalogue",
                    "email": null,
                    "url": "https://www.biocatalogue.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.bioinformatics.org/assemble/contacts.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioinformatics.org/assemble/",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:45:38.090886Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 136,
            "name": "AutoGRAPH",
            "description": "Integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.",
            "homepage": "http://autograph.genouest.org/",
            "biotoolsID": "autograph",
            "biotoolsCURIE": "biotools:autograph",
            "tool_type": [
                "Web service"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Derrien T",
                    "email": "toma.derrien@gmail.com",
                    "url": "http://www-recomgen.univ-rennes1.fr/doggy.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://autograph.genouest.org/Tutorial.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:04:29.788401Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 169,
            "name": "BIONJ",
            "description": "This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.",
            "homepage": "http://www.atgc-montpellier.fr/bionj/",
            "biotoolsID": "bionj",
            "biotoolsCURIE": "biotools:bionj",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric RIVALS",
                    "email": "Eric.Rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~gascuel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/bionj/paper.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:15:50.001899Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 47,
            "name": "BYKdb",
            "description": "Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.",
            "homepage": "http://bykdb.ibcp.fr/BYKdb/",
            "biotoolsID": "bykdb",
            "biotoolsCURIE": "biotools:bykdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact form",
                    "email": null,
                    "url": "https://bykdb.ibcp.fr/BYKdb/BYKdbContact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://bykdb.ibcp.fr/BYKdb/BYKdbHelp",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:08:37.507577Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 54,
            "name": "AphidBase",
            "description": "An aphid genome database.",
            "homepage": "http://aphidbase.com/",
            "biotoolsID": "aphidbase",
            "biotoolsCURIE": "biotools:aphidbase",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [
                "10.1111/j.1365-2583.2009.00930.x"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "BIPAA platform",
                    "email": "bipaa@rennes.inra.fr",
                    "url": "http://www.inra.fr/bipaa",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bipaa.genouest.org/is/aphidbase/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 189,
            "name": "Erpin",
            "description": "Easy RNA Profile IdentificatioN takes as input an RNA sequence alignment and secondary structure annotation and will identify a wide variety of known RNA motifs (such as tRNAs, 5S rRNAs, SRP RNA, C/D box snoRNAs, hammerhead motifs, miRNAs and others) in your sequence(s) of interest. Also contains tool for drawing secondary structure of motifs.",
            "homepage": "http://rna.igmors.u-psud.fr/Software/erpin.php",
            "biotoolsID": "erpin",
            "biotoolsCURIE": "biotools:erpin",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_3307"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Daniel Gautheret",
                    "email": "daniel.gautheret@u-psud.fr",
                    "url": "http://rna.igmors.u-psud.fr/gautheret/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rna.igmors.u-psud.fr/Software/erpin.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 350,
            "citations": null,
            "annual_visits": 415,
            "last_update": "2024-11-25T15:02:47.019198Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 55,
            "name": "GAG",
            "description": "Generates an NCBI .tbl file of annotations on a genome.",
            "homepage": "https://github.com/genomeannotation/GAG",
            "biotoolsID": "gag",
            "biotoolsCURIE": "biotools:gag",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0077",
                "http://edamontology.org/topic_3673"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Scott M Geib",
                    "email": "scott.geib@ars.usda.gov",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "https://github.com/genomeannotation/GAG",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:31:52.130383Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 188,
            "name": "SyntTax",
            "description": "A web server linking synteny to prokaryotic taxonomy.",
            "homepage": "http://archaea.u-psud.fr/SyntTax/",
            "biotoolsID": "synttax",
            "biotoolsCURIE": "biotools:synttax",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3053"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jacques Oberto",
                    "email": "jacques.oberto@igmors.u-psud.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://archaea.u-psud.fr/SyntTax/SyntTax_Help.html",
            "maturity": null,
            "cost": null,
            "unique_visits": 1707,
            "citations": null,
            "annual_visits": 3829,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 249,
            "name": "FROGS",
            "description": "The user-friendly and Galaxy-supported pipeline FROGS analyses large sets of DNA amplicons sequences accurately and rapidly, essential for microbe community studies.",
            "homepage": "http://frogs.toulouse.inra.fr/",
            "biotoolsID": "frogs",
            "biotoolsCURIE": "biotools:frogs",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "FROGS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btx791",
                "10.1093/bib/bbab318"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/geraldinepascal/FROGS",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:07:18.846597Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": "https://github.com/geraldinepascal/FROGS"
        }
    ]
}