GET /api/tool/?format=api&offset=180&ordering=-maturity
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=200&ordering=-maturity",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=-maturity",
    "results": [
        {
            "id": 100,
            "name": "Genomicus-fungi",
            "description": "Genomicus-fungi is a genome browser that enables users to navigate in fungi genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus-fungi/",
            "biotoolsID": "Genomicus-fungi",
            "biotoolsCURIE": "biotools:Genomicus-fungi",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/gks1156"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Roest Crollius",
                    "email": "hrc@ens.fr",
                    "url": "http://www.ibens.ens.fr/?rubrique43",
                    "orcidid": "http://orcid.org/0000-0002-8209-173X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "PB-IBENS"
            ],
            "source_repository": null
        },
        {
            "id": 97,
            "name": "Ocean Gene Atlas",
            "description": "The Ocean Gene Atlas service provides data mining access to three complementary data objects: gene sequence catalogs (ENA), sample environmental context (PANGAEA), and gene abundances estimates in samples (computed by mapping sequence reads onto gene catalogs).\nUser queries are composed of either a sequence (nucleic or protein), or a hidden Markov model derived from a multiple sequence alignment. Homologs of the user query in the gene catalogs are identified using standard sequence similarity search tools (eg BLAST or HMMER), and their read based estimated abundance are displayed in interactive maps and plots. A phylogenetic tree is also inferred in order to situate the user query within its context of marine environmental homologs as well as known homologs from reference sequences.",
            "homepage": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/",
            "biotoolsID": "Ocean_Gene_Atlas",
            "biotoolsCURIE": "biotools:Ocean_Gene_Atlas",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3387",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3941"
            ],
            "primary_publication": [
                "10.1093/nar/gky376"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "MIO",
                    "email": null,
                    "url": "https://www.mio.osupytheas.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "OCEANOMICS",
                    "email": null,
                    "url": "http://www.oceanomics.eu/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": "ANR-11-BTBR-0008"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "oceangeneatlas@mio.osupytheas.fr",
                    "url": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/credits",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Not licensed",
            "documentation": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/build/pdf/Ocean-Gene-Atlas_User_Manual.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:34.208631Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 13,
            "name": "Human Splicing Finder",
            "description": "The Human Splicing Finder (HSF) system combines 12 different algorithms to identify and predict mutations’ effect on splicing motifs including the acceptor and donor splice sites, the branch point and auxiliary sequences known to either enhance or repress splicing: Exonic Splicing Enhancers (ESE) and Exonic Splicing Silencers (ESS).",
            "homepage": "http://www.umd.be/HSF3/",
            "biotoolsID": "human_splicing_finder",
            "biotoolsCURIE": "biotools:human_splicing_finder",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "Developed_RD-Connect",
                "RD-Connect",
                "Rare Disease",
                "ELIXIR-FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3571",
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0199",
                "http://edamontology.org/topic_3063"
            ],
            "primary_publication": [
                "10.1093/nar/gkp215"
            ],
            "operating_system": [
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact Form",
                    "email": null,
                    "url": "http://www.umd.be/HSF3/contactus.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Christophe Béroud",
                    "email": "christophe.beroud@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "David Salgado",
                    "email": "david.salgado@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.umd.be/HSF3/technicaltips.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T13:49:29.814329Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 197,
            "name": "JASS",
            "description": "software package that handles the computation of the joint statistics over sets of selected GWAS results, and the interactive exploration of the results through a web interface.",
            "homepage": "http://statistical-genetics.pages.pasteur.fr/jass/",
            "biotoolsID": "jass",
            "biotoolsCURIE": "biotools:jass",
            "tool_type": [
                "Command-line tool",
                "Web application",
                "Web service"
            ],
            "collection": [
                "Institut Pasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3517",
                "http://edamontology.org/topic_2269",
                "http://edamontology.org/topic_3053"
            ],
            "primary_publication": [
                "10.1093/nargab/lqaa003",
                "10.1101/714832v1"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Carla Lasry",
                    "email": null,
                    "url": "https://research.pasteur.fr/fr/member/carla-lasry/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chunzi Yao",
                    "email": "chunzi.yao@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/chunzi-yao/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Vincent Laville",
                    "email": "vincent.laville@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Bjarni Vilhjalmsson",
                    "email": null,
                    "url": "https://pure.au.dk/portal/en/persons/bjarni-johann-vilhjlmsson(35c047ab-0899-4434-91bb-121e4878ec76).html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Hervé Ménager",
                    "email": "herve.menager@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/search/herve%20menager",
                    "orcidid": "https://orcid.org/0000-0002-7552-1009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Aschard",
                    "email": "hugues.aschard@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/hugues-aschard/",
                    "orcidid": "http://orcid.org/0000-0002-7554-6783",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Hanna Julienne",
                    "email": "hanna.julienne@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/hanna-julienne/",
                    "orcidid": "https://orcid.org/0000-0001-8214-9412",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Vincent Guillemot",
                    "email": "vincent.guillemot@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/vincent-guillemot/",
                    "orcidid": "https://orcid.org/0000-0002-7421-0655",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierre Lechat",
                    "email": "pierre.lechat@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/pierre-lechat/",
                    "orcidid": "https://orcid.org/0000-0003-1050-5582",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://statistical-genetics.pages.pasteur.fr/jass/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:46:08.475046Z",
            "teams": [],
            "source_repository": "https://gitlab.pasteur.fr/statistical-genetics/jass"
        },
        {
            "id": 241,
            "name": "iPPI-DB",
            "description": "IPPI-DB is a database of modulators of protein-protein interactions. It contains exclusively small molecules and therefore no peptides. The data are retrieved from the literature either peer reviewed scientific articles or world patents. A large variety of data is stored within IPPI-DB: structural, pharmacological, binding and activity profile, pharmacokinetic and cytotoxicity when available, as well as some data about the PPI targets themselves.",
            "homepage": "https://ippidb.pasteur.fr",
            "biotoolsID": "ippi-db",
            "biotoolsCURIE": "biotools:ippi-db",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3343"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Olivier Sperandio",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6610-2729",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-01-14T17:37:37Z",
            "teams": [],
            "source_repository": "https://gitlab.pasteur.fr/ippidb/ippidb-web/"
        },
        {
            "id": 9,
            "name": "remap",
            "description": "Display restriction enzyme binding sites in a nucleotide sequence.",
            "homepage": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
            "biotoolsID": "remap",
            "biotoolsCURIE": "biotools:remap",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [
                "EMBOSS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3125"
            ],
            "primary_publication": [
                "10.1016/S0168-9525(00)02024-2"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "EMBOSS",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "EMBOSS Contributors",
                    "email": null,
                    "url": "http://emboss.open-bio.org/html/use/pr01s01.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "EMBOSS",
                    "email": "emboss@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "emboss@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "emboss-bug@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "UK MRC",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Wellcome Trust",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "UK BBSRC",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:55Z",
            "teams": [],
            "source_repository": "http://emboss.open-bio.org/html/adm/ch01s01.html"
        },
        {
            "id": 151,
            "name": "ReproGenomics Viewer",
            "description": "The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community.",
            "homepage": "http://rgv.genouest.org",
            "biotoolsID": "reprogenomics_viewer",
            "biotoolsCURIE": "biotools:reprogenomics_viewer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3420"
            ],
            "primary_publication": [
                "10.1093/nar/gkv345"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Thomas Darde",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "irisa.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Olivier Sallou",
                    "email": "olivier.sallou@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Frédéric Chalmel",
                    "email": "frederic.chalmel@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rgv.genouest.org/tuto.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:22:51.040462Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 14,
            "name": "UMD-Predictor",
            "description": "A tool that provides a combinatorial approach to identify potential pathogenic variations, that associates the following data: localization within the protein, conservation, biochemical properties of the mutant and wild-type residues, and the potential impact of the variation on mRNA.",
            "homepage": "http://umd-predictor.eu",
            "biotoolsID": "umd-predictor",
            "biotoolsCURIE": "biotools:umd-predictor",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "Developed_RD-Connect",
                "RD-Connect",
                "Rare Disease",
                "ELIXIR-FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0199",
                "http://edamontology.org/topic_3574",
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0634"
            ],
            "primary_publication": [
                "10.1002/humu.22965"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christophe Beroud",
                    "email": "christophe.beroud@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "David Salgado",
                    "email": "david.salgado@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-07-24T20:06:47Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 109,
            "name": "RSAT dyad-analysis",
            "description": "Detect over- or under-represented dyads (spaced pairs of k-mers) in sequences.",
            "homepage": "http://teaching.rsat.eu/dyad-analysis_form.cgi",
            "biotoolsID": "RSAT_dyad-analysis",
            "biotoolsCURIE": "biotools:RSAT_dyad-analysis",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [
                "10.1093/nar/28.8.1808"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "UNAM",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": "grid.9486.3",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université Libre de Bruxelles",
                    "email": null,
                    "url": "https://www.ulb.be/",
                    "orcidid": null,
                    "gridid": "grid.4989.c",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Documentor",
                        "Maintainer",
                        "Support",
                        "Provider"
                    ],
                    "name": "Jacques van Helden",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://rsat-doc.github.io/using-RSAT/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/rsat-doc"
        },
        {
            "id": 196,
            "name": "Viral Host Range database",
            "description": "The Viral Host Range database represents a unique resource for the community to rapidly find, document analyze and disseminate data related to the range of hosts that a virus can infect. Over the years, countless host range experiments have been performed in many laboratories. However, these data are not readily available to the community and are therefore underexploited.\n\nThe VHRdb is an online resource that centralizes experimental data related to the host range of viruses. While it originates from bacteriophages and bacteria interaction studies, its design is compatible with viruses infecting all living forms. Users can browse publicly available data to find which host is infected by a virus, and vice versa. Users can also upload their own data while keeping it private or making it public, analyze results across independent sets of data, generate and visualize outputs. Data implemented in the VHRdb are linked to users and, if available, to publications and sequence identifiers.",
            "homepage": "https://viralhostrangedb.pasteur.cloud/",
            "biotoolsID": "VHRdb",
            "biotoolsCURIE": "biotools:VHRdb",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3489",
                "http://edamontology.org/topic_0781"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btab070"
            ],
            "operating_system": [
                "Mac",
                "Windows",
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor",
                        "Developer"
                    ],
                    "name": "LAMY-BESNIER Quentin",
                    "email": null,
                    "url": "https://research.pasteur.fr/fr/member/fr-quentin-lamy-besnier/",
                    "orcidid": "https://orcid.org/0000-0002-7141-6340",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "MÉNAGER Hervé",
                    "email": null,
                    "url": "https://research.pasteur.fr/fr/member/herve-menager/",
                    "orcidid": "https://orcid.org/0000-0002-7552-1009",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": "grid.428999.7",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Developer"
                    ],
                    "name": "Bryan Brancotte",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/member/bryan-brancotte",
                    "orcidid": "https://orcid.org/0000-0001-8669-5525",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "DEBARBIEUX Laurent",
                    "email": null,
                    "url": "https://research.pasteur.fr/fr/member/laurent-debarbieux/",
                    "orcidid": "https://orcid.org/0000-0001-6875-5758",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://hub.pages.pasteur.fr/viralhostrangedb/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-06-24T08:58:13.476714Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": "https://gitlab.pasteur.fr/hub/viralhostrangedb/"
        },
        {
            "id": 164,
            "name": "InterEvDock",
            "description": "Ab initio protein docking based on rigid-body sampling followed by consensus scoring using physics-based and statistical potentials, including the InterEvScore function specifically developed to incorporate co-evolutionary information in docking.",
            "homepage": "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2",
            "biotoolsID": "interevdock2",
            "biotoolsCURIE": "biotools:interevdock2",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1093/nar/gky377",
                "10.1093/nar/gkw340"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Raphael Guerois",
                    "email": "raphael.guerois@cea.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5294-2858",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jessica Andreani",
                    "email": "jessica.andreani@cea.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Freeware",
            "documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/InterEvDock2/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 310,
            "citations": null,
            "annual_visits": 1120,
            "last_update": "2024-11-24T21:00:12.284563Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        },
        {
            "id": 172,
            "name": "Mix",
            "description": "Tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length.",
            "homepage": "https://github.com/cbib/MIX",
            "biotoolsID": "mix",
            "biotoolsCURIE": "biotools:mix",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [
                "10.1186/1471-2105-14-S15-S16"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Alexis Groppi",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "CNRS / LaBRI, Universite Bordeaux 1, 351 cours de la Liberation, 33405 Talence Cedex, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "CBiB - Universite Victor Segalen Bordeaux, 146, rue Leo Saignat, 33076 Bordeaux, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CBiB - Universite Victor Segalen Bordeaux, 146, rue Leo Saignat, 33076 Bordeaux, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CNRS / LaBRI, Universite Bordeaux 1, 351 cours de la Liberation, 33405 Talence Cedex, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "Alexis Groppi",
                    "email": "alexis.groppi@u-bordeaux.fr",
                    "url": "http://www.cbib.u-bordeaux2.fr/fr/content/services",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexis Groppi",
                    "email": "alexis.groppi@u-bordeaux.fr",
                    "url": "http://www.cbib.u-bordeaux2.fr/fr/content/services",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Heissam Soueidan",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Florence Maurier",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NKI-AVL, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Macha Nikolski",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "NKI-AVL, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "u-bordeaux.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "https://github.com/cbib/MIX",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:18:36.339969Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": null
        },
        {
            "id": 125,
            "name": "Gigwa",
            "description": "The Gigwa application, which stands for “Genotype Investigator for Genome-Wide Analyses”, provides an easy and intuitive way to explore large amounts of genotyping data by filtering it not only on the basis of variant features, including functional annotations, but also matching genotype patterns. It is a fairly lightweight, web-based, platform-independent solution that may be deployed on a workstation or as a data portal. It allows to feed a MongoDB database with VCF, PLINK or HapMap files containing up to tens of billions of genotypes, and provides a user-friendly interface to filter data in real time. Gigwa provides the means to export filtered data into several popular formats and features connectivity not only with online genomic tools, but also with standalone software such as FlapJack or IGV. Additionnally, Gigwa-hosted datasets are interoperable via two standard REST APIs: GA4GH and BrAPI.",
            "homepage": "http://www.southgreen.fr/content/gigwa",
            "biotoolsID": "Gigwa",
            "biotoolsCURIE": "biotools:Gigwa",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [
                "10.1093/GIGASCIENCE/GIZ051",
                "10.1186/s13742-016-0131-8"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Guilhem Sempéré",
                    "email": "guilhem.sempere@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-7429-2091",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gigwa@cirad.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "http://gigwa.southgreen.fr/gigwa/docs/gigwa_docs.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2020-09-14T08:25:17Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://github.com/SouthGreenPlatform/Gigwa2"
        },
        {
            "id": 247,
            "name": "metagWGS",
            "description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
            "homepage": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs",
            "biotoolsID": "metagwgs",
            "biotoolsCURIE": "biotools:metagwgs",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3391",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Claire Hoede",
                    "email": "claire.hoede@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5054-7731",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenoToul bioinformatics facility",
                    "email": null,
                    "url": "http://bioinfo.genotoul.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://genotoul-bioinfo.pages-forge.inrae.fr/metagwgs/master/index.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-12-11T14:51:44.804907Z",
            "teams": [
                "Genotoul-bioinfo"
            ],
            "source_repository": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs"
        },
        {
            "id": 121,
            "name": "LoRDEC",
            "description": "Program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads.",
            "homepage": "http://www.atgc-montpellier.fr/lordec/",
            "biotoolsID": "lordec",
            "biotoolsCURIE": "biotools:lordec",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric Rivals",
                    "email": "rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~rivals/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Leena Salmela",
                    "email": "leena.salmela@cs.Helsinki.FI",
                    "url": "https://www.cs.helsinki.fi/u/lmsalmel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/lordec/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:01:03.046535Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 132,
            "name": "Minia",
            "description": "Short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.",
            "homepage": "http://minia.genouest.org/",
            "biotoolsID": "minia",
            "biotoolsCURIE": "biotools:minia",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [
                "10.1186/1748-7188-9-2"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Guillaume Rizk",
                    "email": "guillaume.rizk@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Rayan Chikhi",
                    "email": "chikhi@psu.edu",
                    "url": "http://rayan.chikhi.name",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://minia.genouest.org/files/minia.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:36:01.515486Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 108,
            "name": "RSAT position-analysis",
            "description": "Detect oligomers (k-mers) whose positional distribution significantly discard from a homogeneous distribution.",
            "homepage": "http://teaching.rsat.eu/position-analysis_form.cgi",
            "biotoolsID": "RSAT-position-analysis",
            "biotoolsCURIE": "biotools:RSAT-position-analysis",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [
                "10.1093/nar/28.4.1000"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Documentor",
                        "Maintainer",
                        "Support",
                        "Provider"
                    ],
                    "name": "Jacques van Helden",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université Libre de Bruxelles",
                    "email": null,
                    "url": "https://www.ulb.be/",
                    "orcidid": null,
                    "gridid": "grid.4989.c",
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://rsat-doc.github.io/using-RSAT/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/rsat-doc"
        },
        {
            "id": 145,
            "name": "MacSyFinder",
            "description": "Program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems to reflect these conserved features, and to allow their efficient detection.",
            "homepage": "https://github.com/gem-pasteur/macsyfinder",
            "biotoolsID": "macsyfinder",
            "biotoolsCURIE": "biotools:macsyfinder",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "GEM Pasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0085"
            ],
            "primary_publication": [
                "10.1371/journal.pone.0110726",
                "10.24072/pcjournal.250"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Eduardo Rocha",
                    "email": "eduardo.rocha@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioinformatics and Biostatistics HUB",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Microbial Evolutionary Genomics Unit",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/microbial-evolutionary-genomics/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": "CNRS - UMR 352"
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/bertrand-neron/",
                    "orcidid": "https://orcid.org/0000-0002-0220-0482",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Eduardo Rocha",
                    "email": "eduardo.rocha@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
                    "orcidid": "https://orcid.org/0000-0001-7704-822X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Sophie Abby",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-5231-3346",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "https://research.pasteur.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "C3BI",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/center/c3bi/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://macsyfinder.readthedocs.io/en/latest/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T13:49:36.708539Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": "https://github.com/gem-pasteur/macsyfinder"
        },
        {
            "id": 130,
            "name": "MEMHDX",
            "description": "This tool allows users to perform an automated workflow to analyze, validate and visualize large HDX-MS datasets. The input file is the output of DynamX software from Waters. Output files provide a plot of the data, the fitted model for each peptide, a plot of the calculated p -values, and a global visualization of the experiment. User could also obtain an overview of all peptides on the 3D structure.",
            "homepage": "http://memhdx.c3bi.pasteur.fr/",
            "biotoolsID": "memhdx",
            "biotoolsCURIE": "biotools:memhdx",
            "tool_type": [
                "Web application"
            ],
            "collection": [
                "Proteomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3520"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btw420"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Stevenn Volant",
                    "email": "svolant@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/stevenn-volant/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Sébastien Brier",
                    "email": "sbrier@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/sebastien-brier/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Structural Mass Spectrometry and Proteomics",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/structural-mass-spectrometry-and-proteomics/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Véronique Hourdel",
                    "email": "vhourdel@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/veronique-hourdel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Marie-Agnès Dillies",
                    "email": "marie-agnes.dillies@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/marie-agnes-dillies/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "https://research.pasteur.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "C3BI",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/center/c3bi/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Bioinformatics and Biostatistics Hub",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.youtube.com/watch?v=WeCt1sVyHio&feature=youtu.be",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 833,
            "citations": null,
            "annual_visits": 1524,
            "last_update": "2024-11-25T14:14:10.281449Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": null
        },
        {
            "id": 84,
            "name": "IMGT, the international ImMunoGeneTics information system",
            "description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
            "homepage": "http://www.imgt.org/",
            "biotoolsID": "imgt",
            "biotoolsCURIE": "biotools:imgt",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3948",
                "http://edamontology.org/topic_3930"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.imgt.org/IMGTinformation/Contact.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/FAQ/",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:34:08.902650Z",
            "teams": [],
            "source_repository": null
        }
    ]
}