GET /api/tool/?format=api&offset=160&ordering=unique_visits
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=unique_visits",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=unique_visits",
    "results": [
        {
            "id": 107,
            "name": "GENOMICUS",
            "description": "Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
            "homepage": "http://www.genomicus.biologie.ens.fr/genomicus/",
            "biotoolsID": "GENOMICUS",
            "biotoolsCURIE": "biotools:GENOMICUS",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "GENOMICUS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3943",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btq079",
                "10.1093/nar/gkab1091"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "genomicus-web@ens.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexandra Louis",
                    "email": "alouis@biologie.ens.fr",
                    "url": "http://www.ibens.ens.fr/spip.php?article182",
                    "orcidid": "http://orcid.org/0000-0001-7032-5650",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "IBENS - DYOGEN Team",
                    "email": null,
                    "url": "http://www.ibens.ens.fr/?rubrique43&lang=en",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "PB-IBENS",
                    "email": null,
                    "url": "https://www.ibens.ens.fr/?rubrique55",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Hugues Roest Crollius",
                    "email": "hrc@ens.fr",
                    "url": "http://www.ibens.ens.fr/?rubrique43",
                    "orcidid": "http://orcid.org/0000-0002-8209-173X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.youtube.com/watch?v=CokUh3fUbGQ",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-03-06T14:10:23.175189Z",
            "teams": [
                "PB-IBENS"
            ],
            "source_repository": null
        },
        {
            "id": 13,
            "name": "Human Splicing Finder",
            "description": "The Human Splicing Finder (HSF) system combines 12 different algorithms to identify and predict mutations’ effect on splicing motifs including the acceptor and donor splice sites, the branch point and auxiliary sequences known to either enhance or repress splicing: Exonic Splicing Enhancers (ESE) and Exonic Splicing Silencers (ESS).",
            "homepage": "http://www.umd.be/HSF3/",
            "biotoolsID": "human_splicing_finder",
            "biotoolsCURIE": "biotools:human_splicing_finder",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "Developed_RD-Connect",
                "RD-Connect",
                "Rare Disease",
                "ELIXIR-FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3571",
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0199"
            ],
            "primary_publication": [
                "10.1093/nar/gkp215"
            ],
            "operating_system": [
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact Form",
                    "email": null,
                    "url": "http://www.umd.be/HSF3/contactus.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Christophe Béroud",
                    "email": "christophe.beroud@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "David Salgado",
                    "email": "david.salgado@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.umd.be/HSF3/technicaltips.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T13:49:29.814329Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 255,
            "name": "Kmerator",
            "description": "Kmerator is a prototype tool designed for the prediction of specific k-mers (also called tags) from input sequences, considering a reference genome and an ENSEMBL-like transcriptome. From these specific k-mers, it also outputs their corresponding specific contigs which are sequences of consecutive k-mers (overlapping length between k-mers must be k-1, otherwise, it's a new contig). Kmerator first uses Jellyfish to create 2 requestable indexes from the reference genome and transcriptome, and second, decomposes your input transcript or gene sequences to count the occurences of each k-mer in the genome and transcriptome.",
            "homepage": "https://github.com/Transipedia/kmerator",
            "biotoolsID": "kmerator",
            "biotoolsCURIE": "biotools:kmerator",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3360",
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3512"
            ],
            "primary_publication": [
                "10.1093/nargab/lqab058"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Thérèse Commes",
                    "email": "therese.commes@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T16:01:46.602609Z",
            "teams": [
                "Bio2M"
            ],
            "source_repository": null
        },
        {
            "id": 97,
            "name": "Ocean Gene Atlas",
            "description": "The Ocean Gene Atlas service provides data mining access to three complementary data objects: gene sequence catalogs (ENA), sample environmental context (PANGAEA), and gene abundances estimates in samples (computed by mapping sequence reads onto gene catalogs).\nUser queries are composed of either a sequence (nucleic or protein), or a hidden Markov model derived from a multiple sequence alignment. Homologs of the user query in the gene catalogs are identified using standard sequence similarity search tools (eg BLAST or HMMER), and their read based estimated abundance are displayed in interactive maps and plots. A phylogenetic tree is also inferred in order to situate the user query within its context of marine environmental homologs as well as known homologs from reference sequences.",
            "homepage": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/",
            "biotoolsID": "Ocean_Gene_Atlas",
            "biotoolsCURIE": "biotools:Ocean_Gene_Atlas",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3387",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0610"
            ],
            "primary_publication": [
                "10.1093/nar/gky376"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "oceangeneatlas@mio.osupytheas.fr",
                    "url": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/credits",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "MIO",
                    "email": null,
                    "url": "https://www.mio.osupytheas.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "OCEANOMICS",
                    "email": null,
                    "url": "http://www.oceanomics.eu/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": "ANR-11-BTBR-0008"
                }
            ],
            "tool_licence": "Not licensed",
            "documentation": "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/build/pdf/Ocean-Gene-Atlas_User_Manual.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:34.208631Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 113,
            "name": "ParameciumDB",
            "description": "Online community database for Paramecium species. Contains annotation of genome sequences and features, genome-wide data sets, advanced capabilities to query, retrieve, visualize and compare data.",
            "homepage": "https://paramecium.i2bc.paris-saclay.fr",
            "biotoolsID": "parameciumdb",
            "biotoolsCURIE": "biotools:parameciumdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Contact Form",
                    "email": null,
                    "url": "https://paramecium.i2bc.paris-saclay.fr/cgi/user/contact",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Terms of Use",
                    "email": null,
                    "url": "https://paramecium.i2bc.paris-saclay.fr/parawiki/Terms_of_Use",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:30.463079Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 8,
            "name": "Plant DataDiscovery",
            "description": "The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world.\n\nThe web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
            "biotoolsID": "Plant_DataDiscovery",
            "biotoolsCURIE": "biotools:Plant_DataDiscovery",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [
                "10.1186/s13059-018-1491-4"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Support"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/data-discovery/about",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-12-12T16:19:23.574076Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 249,
            "name": "FROGS",
            "description": "The user-friendly and Galaxy-supported pipeline FROGS analyses large sets of DNA amplicons sequences accurately and rapidly, essential for microbe community studies.",
            "homepage": "http://frogs.toulouse.inra.fr/",
            "biotoolsID": "frogs",
            "biotoolsCURIE": "biotools:frogs",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "FROGS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_0637"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btx791",
                "10.1093/bib/bbab318"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Géraldine Pascal",
                    "email": "geraldine.pascal@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/geraldinepascal/FROGS",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:07:18.846597Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": "https://github.com/geraldinepascal/FROGS"
        },
        {
            "id": 6,
            "name": "SNiPlay",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 7,
            "name": "PhROGs",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 10,
            "name": "Dog CNV database",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 11,
            "name": "MacSyDB-TXSSdb",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 12,
            "name": "Listeriomics : Systems Biology of Listeria",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 15,
            "name": "Locus Specific Databases UMD",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 16,
            "name": "dbWFA",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 17,
            "name": "ECOD",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 18,
            "name": "HuGChip",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 20,
            "name": "PRIAM",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 23,
            "name": "Multi-Genome Genolist",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 24,
            "name": "Conjdb",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 25,
            "name": "secreton",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        }
    ]
}