GET /api/tool/?format=api&offset=160&ordering=name
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 216,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=name",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=name",
    "results": [
        {
            "id": 26,
            "name": "ppRNome Browser",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 20,
            "name": "PRIAM",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 22,
            "name": "ProDom protein domain database",
            "description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
            "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
            "biotoolsID": "prodom",
            "biotoolsCURIE": "biotools:prodom",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0736"
            ],
            "primary_publication": [
                "10.1093/nar/28.1.267"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:21:05.113834Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 134,
            "name": "Protomata",
            "description": "Motif search and discovery in protein sequences.",
            "homepage": "http://tools.genouest.org/tools/protomata/",
            "biotoolsID": "protomata",
            "biotoolsCURIE": "biotools:protomata",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1007/11564096_50"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://tools.genouest.org/tools/protomata/help",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 243,
            "name": "RAPPAS",
            "description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
            "homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
            "biotoolsID": "RAPPAS",
            "biotoolsCURIE": "biotools:RAPPAS",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btz068"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Linard",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:27.880847Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 92,
            "name": "RARe",
            "description": "RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultivated plants, wild species related to domestic animals, forest trees, micro-organisms of agronomic or agri-food interest, micro-organisms and environmental organisms.\nThe purpose of this web portal is to facilitate the discoverability of these data. \nRARe search is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/rare/",
            "biotoolsID": "RARe",
            "biotoolsCURIE": "biotools:RARe",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/rare/about",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-07-29T13:42:40.608985Z",
            "teams": [
                "URGI"
            ],
            "source_repository": null
        },
        {
            "id": 198,
            "name": "RASTA-Bacteria",
            "description": "Automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.",
            "homepage": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/",
            "biotoolsID": "rasta-bacteria",
            "biotoolsCURIE": "biotools:rasta-bacteria",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0154",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3301"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Emeric Sevin",
                    "email": "esevin@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Frédérique Hubler",
                    "email": "fhubler@univ-rennes1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/index.php?page=faq",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:14:59.683127Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 9,
            "name": "remap",
            "description": "Display restriction enzyme binding sites in a nucleotide sequence.",
            "homepage": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
            "biotoolsID": "remap",
            "biotoolsCURIE": "biotools:remap",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [
                "EMBOSS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3125"
            ],
            "primary_publication": [
                "10.1016/S0168-9525(00)02024-2"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "EMBOSS Contributors",
                    "email": null,
                    "url": "http://emboss.open-bio.org/html/use/pr01s01.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "UK MRC",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Wellcome Trust",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "UK BBSRC",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "EMBOSS",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "EMBOSS",
                    "email": "emboss@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "emboss@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "emboss-bug@emboss.open-bio.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:55Z",
            "teams": [],
            "source_repository": "http://emboss.open-bio.org/html/adm/ch01s01.html"
        },
        {
            "id": 267,
            "name": "ReMap",
            "description": "ReMap is a large scale integrative analysis of DNA-binding experiments for Homo sapiens, Mus musculus, Drosophila melanogaster and Arabidopsis thaliana transcriptional regulators. The catalogues are the results of the manual curation of ChIP-seq, ChIP-exo, DAP-seq from public sources (GEO, ENCODE, ENA). ReMap (https://remap.univ-amu.fr) aims to provide manually curated, high-quality catalogs of regulatory regions resulting from a large-scale integrative analysis of DNA-binding experiments in Human, Mouse, Fly and Arabidopsis thaliana for hundreds of transcription factors and regulators. In this 2022 update, we have uniformly processed >11 000 DNA-binding sequencing datasets from public sources across four species. The four regulatory catalogs are browsable through track hubs at UCSC, Ensembl and NCBI genome browsers.",
            "homepage": "https://remap.univ-amu.fr/",
            "biotoolsID": "inserm-remap",
            "biotoolsCURIE": "biotools:inserm-remap",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0749",
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3173"
            ],
            "primary_publication": [
                "10.1093/nar/gku1280",
                "10.1093/nar/gkab996",
                "10.1093/nar/gkz945",
                "10.1093/nar/gkx1092"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "Inserm U1090 - TAGC",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Benoit Ballester",
                    "email": "benoit.ballester@inserm.fr",
                    "url": null,
                    "orcidid": "http://orcid.org/0000-0002-0834-7135",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Aix-Marseille University",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "French Institute of Health and Medical Research",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://remap.univ-amu.fr/about_hsap_page",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:21:26.315951Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": "https://remap.univ-amu.fr/"
        },
        {
            "id": 105,
            "name": "REPET",
            "description": "The REPET package integrates bioinformatics pipelines dedicated to detect, annotate and analyze transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii)\n TEannot, which mines a genome with a library of TE sequences, for instance the one produced by the TEdenovo pipeline, to provide TE annotations exported into GFF3 files.",
            "homepage": "https://urgi.versailles.inrae.fr/Tools/REPET",
            "biotoolsID": "repet",
            "biotoolsCURIE": "biotools:repet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI",
                "REPET",
                "PlantBioinfoPF"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0157",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [
                "10.1371/journal.pone.0091929",
                "10.1371/journal.pone.0016526",
                "10.1371/journal.pcbi.0010022",
                "10.1007/s00239-003-0007-2"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Maintainer",
                        "Documentor",
                        "Contributor",
                        "Developer",
                        "Provider"
                    ],
                    "name": "URGI",
                    "email": "urgi-repet@versailles.inra.fr",
                    "url": "http://urgi.versailles.inra.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor",
                        "Maintainer",
                        "Provider",
                        "Support",
                        "Documentor"
                    ],
                    "name": "URGI",
                    "email": "urgi-repet@versailles.inrae.fr",
                    "url": "http://urgi.versailles.inrae.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "https://urgi.versailles.inrae.fr/Tools/REPET",
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-09-09T08:10:41.737859Z",
            "teams": [
                "URGI"
            ],
            "source_repository": "https://urgi.versailles.inrae.fr/download/repet/"
        },
        {
            "id": 151,
            "name": "ReproGenomics Viewer",
            "description": "The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community.",
            "homepage": "http://rgv.genouest.org",
            "biotoolsID": "reprogenomics_viewer",
            "biotoolsCURIE": "biotools:reprogenomics_viewer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3420"
            ],
            "primary_publication": [
                "10.1093/nar/gkv345"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Thomas Darde",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "irisa.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Olivier Sallou",
                    "email": "olivier.sallou@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Frédéric Chalmel",
                    "email": "frederic.chalmel@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rgv.genouest.org/tuto.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:22:51.040462Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 3,
            "name": "Rice Genome Hub",
            "description": "An open source database(s) for genetics, genomics and functional research in rice species",
            "homepage": "https://rice-genome-hub.southgreen.fr/",
            "biotoolsID": "Rice_Genome_Hub",
            "biotoolsCURIE": "biotools:Rice_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_3366",
                "http://edamontology.org/topic_0780"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "manuel.ruiz@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8153-276X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "christine.tranchant@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6934-1215",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CRP Rice",
                    "email": null,
                    "url": "http://ricecrp.org/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 171,
            "name": "RNAbrowse",
            "description": "The tool permits sequencing facilities and, even small, bioinformatic teams to give a user-friendly access to RNA-Seq de novo results, helping biologists to analyse and extract meaningful information from their data.",
            "homepage": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
            "biotoolsID": "rnabrowse",
            "biotoolsCURIE": "biotools:rnabrowse",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_0219"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo",
            "maturity": null,
            "cost": null,
            "unique_visits": 2250,
            "citations": null,
            "annual_visits": 4720,
            "last_update": "2018-12-10T12:58:51Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 170,
            "name": "RNAspace",
            "description": "A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.",
            "homepage": "http://www.rnaspace.org/",
            "biotoolsID": "rnaspace",
            "biotoolsCURIE": "biotools:rnaspace",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0219"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "Marie-Josee.Cros@inra.fr",
                    "url": "http://rnaspace.org/partners",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.rnaspace.org/help/#help1",
            "maturity": null,
            "cost": null,
            "unique_visits": 14318,
            "citations": null,
            "annual_visits": 17558,
            "last_update": "2018-12-10T12:58:50Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 109,
            "name": "RSAT dyad-analysis",
            "description": "Detect over- or under-represented dyads (spaced pairs of k-mers) in sequences.",
            "homepage": "http://teaching.rsat.eu/dyad-analysis_form.cgi",
            "biotoolsID": "RSAT_dyad-analysis",
            "biotoolsCURIE": "biotools:RSAT_dyad-analysis",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [
                "10.1093/nar/28.8.1808"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "UNAM",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": "grid.9486.3",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université Libre de Bruxelles",
                    "email": null,
                    "url": "https://www.ulb.be/",
                    "orcidid": null,
                    "gridid": "grid.4989.c",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Maintainer",
                        "Primary contact",
                        "Documentor",
                        "Developer",
                        "Provider"
                    ],
                    "name": "Jacques van Helden",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://rsat-doc.github.io/using-RSAT/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/rsat-doc"
        },
        {
            "id": 95,
            "name": "RSAT oligo-analysis",
            "description": "Compute k-mer frequencies (oligonucleotides or oligopeptides) and various statistics to discover exceptional motifs (over-represented or under-represented). Typical applications include discovery of transcription factor binding motifs, restriction sites in bacterial genomes, RNA termination and polyadenylation signals, detection of motifs associated with replication origins, analysis of oligopeptide frequencies in protein sequences.",
            "homepage": "http://teaching.rsat.eu/oligo-analysis_form.cgi",
            "biotoolsID": "oligo-analysis",
            "biotoolsCURIE": "biotools:oligo-analysis",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0749",
                "http://edamontology.org/topic_3510",
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511"
            ],
            "primary_publication": [
                "10.1006/jmbi.1998.1947"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "RSAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Jacques van Helden",
                    "email": "Jacques.van-Helden@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jacques van Helden",
                    "email": "Jacques.van-Helden@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "http://rsat.eu/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:23.505699Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 108,
            "name": "RSAT position-analysis",
            "description": "Detect oligomers (k-mers) whose positional distribution significantly discard from a homogeneous distribution.",
            "homepage": "http://teaching.rsat.eu/position-analysis_form.cgi",
            "biotoolsID": "RSAT-position-analysis",
            "biotoolsCURIE": "biotools:RSAT-position-analysis",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [
                "10.1093/nar/28.4.1000"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Maintainer",
                        "Primary contact",
                        "Documentor",
                        "Developer",
                        "Provider"
                    ],
                    "name": "Jacques van Helden",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8799-8584",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université Libre de Bruxelles",
                    "email": null,
                    "url": "https://www.ulb.be/",
                    "orcidid": null,
                    "gridid": "grid.4989.c",
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://rsat-doc.github.io/using-RSAT/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/rsat-doc"
        },
        {
            "id": 110,
            "name": "RSAT retrieve-ensembl-seq",
            "description": "Returns upstream, downstream, intronic, exonic, UTR, transcript, mRNA, CDS or gene sequences for a list of genes from the EnsEMBL database.\nMulti-genome queries are supported: automatic retrieval of sequences for all the orthologs of the query genes, at a given taxonomical level.",
            "homepage": "http://rsat.sb-roscoff.fr/retrieve-ensembl-seq_form.cgi",
            "biotoolsID": "rsat-retrieve-ensembl-seq",
            "biotoolsCURIE": "biotools:rsat-retrieve-ensembl-seq",
            "tool_type": [
                "Web service",
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "FR",
                "Regulatory Sequence Analysis Tools (RSAT)"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btp519"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Université Libre de Bruxelles",
                    "email": null,
                    "url": "https://www.ulb.be/",
                    "orcidid": null,
                    "gridid": "grid.4989.c",
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Morgane Thomas-Chollier",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-2608-476X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Maintainer",
                        "Primary contact",
                        "Documentor",
                        "Developer"
                    ],
                    "name": "Olivier Sand",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1465-1640",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://rsat-doc.github.io/using-RSAT/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": "https://github.com/rsat-doc"
        },
        {
            "id": 119,
            "name": "RSAT suite",
            "description": "Regulatory Sequence Analysis Tools (RSAT) is a software suite combining specialised tools for the detection of regulatory signals in non-coding sequences. It includes tools for sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Tools may be accessed separately or connected to other tools. As well, the tools are available as web services for integration into programmatic work flows.",
            "homepage": "http://rsat.eu",
            "biotoolsID": "rsat",
            "biotoolsCURIE": "biotools:rsat",
            "tool_type": [
                "Web application",
                "Suite"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0749",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_3125"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jacques van Helden",
                    "email": "Jacques.van-Helden@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Other",
            "documentation": "http://rsat.eu",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:33.330732Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": null
        },
        {
            "id": 159,
            "name": "SABBAC",
            "description": "Tool for the reconstruction of complete protein structures from their alpha-carbon descriptions.",
            "homepage": "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::SABBAC",
            "biotoolsID": "sabbac",
            "biotoolsCURIE": "biotools:sabbac",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2275"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Tufféry",
                    "email": "pierre.tuffery@univ-paris-diderot.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1033-9895",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Freeware",
            "documentation": "https://bioserv.rpbs.univ-paris-diderot.fr/services/SABBAC/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 130,
            "citations": null,
            "annual_visits": 640,
            "last_update": "2024-11-24T21:00:10.511557Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        }
    ]
}