GET /api/tool/?format=api&offset=160&ordering=-unique_visits
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 216,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=180&ordering=-unique_visits",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=-unique_visits",
    "results": [
        {
            "id": 190,
            "name": "CRISPRFinder",
            "description": "Detects this family of direct repeats found in the DNA of many bacteria and archaea.",
            "homepage": "https://crisprcas.i2bc.paris-saclay.fr/CrisprCasFinder/Index",
            "biotoolsID": "crisprfinder",
            "biotoolsCURIE": "biotools:crisprfinder",
            "tool_type": [
                "Web application",
                "Database portal"
            ],
            "collection": [
                "CRISPR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0749",
                "http://edamontology.org/topic_0157",
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_0203"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie Touchon",
                    "email": "mtouchon@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Unlicense",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 480,
            "citations": null,
            "annual_visits": 2273,
            "last_update": "2024-11-24T21:05:00.924973Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 176,
            "name": "Galaxy",
            "description": "Open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.",
            "homepage": "https://galaxyproject.org/",
            "biotoolsID": "galaxy",
            "biotoolsCURIE": "biotools:galaxy",
            "tool_type": [
                "Workflow",
                "Bioinformatics portal",
                "Web application",
                "Web API"
            ],
            "collection": [
                "Galaxy",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3673",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [
                "10.1093/nar/gkw343",
                "10.1093/nar/gkac247"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Galaxy support",
                    "email": null,
                    "url": "https://biostar.usegalaxy.org/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Galaxy Community",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                }
            ],
            "tool_licence": "AFL-3.0",
            "documentation": "https://usegalaxy.org/api/docs",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 400,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:46:57.861339Z",
            "teams": [
                "ABiMS",
                "South Green"
            ],
            "source_repository": "https://github.com/galaxyproject/galaxy"
        },
        {
            "id": 189,
            "name": "Erpin",
            "description": "Easy RNA Profile IdentificatioN takes as input an RNA sequence alignment and secondary structure annotation and will identify a wide variety of known RNA motifs (such as tRNAs, 5S rRNAs, SRP RNA, C/D box snoRNAs, hammerhead motifs, miRNAs and others) in your sequence(s) of interest. Also contains tool for drawing secondary structure of motifs.",
            "homepage": "http://rna.igmors.u-psud.fr/Software/erpin.php",
            "biotoolsID": "erpin",
            "biotoolsCURIE": "biotools:erpin",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_3307"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Daniel Gautheret",
                    "email": "daniel.gautheret@u-psud.fr",
                    "url": "http://rna.igmors.u-psud.fr/gautheret/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rna.igmors.u-psud.fr/Software/erpin.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 350,
            "citations": null,
            "annual_visits": 415,
            "last_update": "2024-11-25T15:02:47.019198Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 161,
            "name": "PEP-SiteFinder",
            "description": "PEP-SiteFinder is a web server tool for the blind identification of peptide binding sites on protein surfaces.",
            "homepage": "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::PEP-SiteFinder",
            "biotoolsID": "pep-sitefinder",
            "biotoolsCURIE": "biotools:pep-sitefinder",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3534",
                "http://edamontology.org/topic_2275"
            ],
            "primary_publication": [
                "10.1093/nar/gku404"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Tufféry",
                    "email": "pierre.tuffery@univ-paris-diderot.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1033-9895",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Freeware",
            "documentation": "https://bioserv.rpbs.univ-paris-diderot.fr/services/PEP-SiteFinder",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 347,
            "citations": null,
            "annual_visits": 1482,
            "last_update": "2024-11-24T20:59:55.640056Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        },
        {
            "id": 164,
            "name": "InterEvDock",
            "description": "Ab initio protein docking based on rigid-body sampling followed by consensus scoring using physics-based and statistical potentials, including the InterEvScore function specifically developed to incorporate co-evolutionary information in docking.",
            "homepage": "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2",
            "biotoolsID": "interevdock2",
            "biotoolsCURIE": "biotools:interevdock2",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1093/nar/gky377",
                "10.1093/nar/gkw340"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Raphael Guerois",
                    "email": "raphael.guerois@cea.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5294-2858",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jessica Andreani",
                    "email": "jessica.andreani@cea.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Freeware",
            "documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/InterEvDock2/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 310,
            "citations": null,
            "annual_visits": 1120,
            "last_update": "2024-11-24T21:00:12.284563Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        },
        {
            "id": 168,
            "name": "FastME",
            "description": "Distance algorithms to infer phylogenies. It's based on balanced minimum evolution, which is the very principle of NJ. It includes Nearest Neighbor Interchange (NNI) and also Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities: distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations.",
            "homepage": "http://www.atgc-montpellier.fr/fastme/",
            "biotoolsID": "fastme",
            "biotoolsCURIE": "biotools:fastme",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [
                "galaxyPasteur",
                "FastME"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/molbev/msv150"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Vincent Lefort",
                    "email": "vincent.lefort@lirmm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "http://www.atgc-montpellier.fr/fastme/usersguide.php",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 300,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T20:59:19.988087Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 182,
            "name": "S-MART",
            "description": "This tool manages your RNA-Seq and ChIP-seq data.",
            "homepage": "http://urgi.versailles.inra.fr/Tools/S-MART",
            "biotoolsID": "s-mart",
            "biotoolsCURIE": "biotools:s-mart",
            "tool_type": [
                "Suite"
            ],
            "collection": [
                "S-MART"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_3169",
                "http://edamontology.org/topic_0092"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Matthias Zytnicki",
                    "email": "matthias.zytnicki@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://urgi.versailles.inra.fr/download/s-mart/doc.pdf",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": 267,
            "citations": null,
            "annual_visits": 474,
            "last_update": "2024-11-25T14:22:04.089851Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 159,
            "name": "SABBAC",
            "description": "Tool for the reconstruction of complete protein structures from their alpha-carbon descriptions.",
            "homepage": "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::SABBAC",
            "biotoolsID": "sabbac",
            "biotoolsCURIE": "biotools:sabbac",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2275"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Tufféry",
                    "email": "pierre.tuffery@univ-paris-diderot.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1033-9895",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Freeware",
            "documentation": "https://bioserv.rpbs.univ-paris-diderot.fr/services/SABBAC/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 130,
            "citations": null,
            "annual_visits": 640,
            "last_update": "2024-11-24T21:00:10.511557Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        },
        {
            "id": 167,
            "name": "MPscan",
            "description": "MPscan (multi-pattern scan) is a program for mapping short reads (<30bp) exactly on a set of reference sequences (eg, a genome) without indexing the reference. MPscan performs only exact mapping (no substitution, nor indels), is fast (optimal complexity), and easy to use.",
            "homepage": "http://www.atgc-montpellier.fr/mpscan/",
            "biotoolsID": "mpscan",
            "biotoolsCURIE": "biotools:mpscan",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_0622"
            ],
            "primary_publication": [
                "10.1007/978-3-642-04241-6_21"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Vincent Lefort",
                    "email": "Vincent.Lefort@lirmm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/download/papers/mpscan_manual_2008.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 100,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2021-04-22T06:40:43Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 155,
            "name": "HHalign-Kbest",
            "description": "Useful to automatically obtain optimized alignments and models in case of low sequence identity (<35%) between a query and a template protein. It can generate k suboptimal (e.g. top-k scoring) alignments rather than only the optimal one which may contain small to large errors.",
            "homepage": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HHalign-Kbest/",
            "biotoolsID": "hhalign-kbest",
            "biotoolsCURIE": "biotools:hhalign-kbest",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_2814",
                "http://edamontology.org/topic_0736"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Raphael Guerois",
                    "email": null,
                    "url": "https://scholar.google.com/citations?user=M7Ln2zQAAAAJ&hl=es",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HHalign-Kbest/#faq",
            "maturity": null,
            "cost": null,
            "unique_visits": 70,
            "citations": null,
            "annual_visits": 260,
            "last_update": "2024-11-25T14:00:57.608636Z",
            "teams": [
                "RPBS"
            ],
            "source_repository": null
        },
        {
            "id": 152,
            "name": "PipeAlign2",
            "description": "Takes one or more protein sequences as input and analyzes them in a five-step process during which searches for sequence homologues, analyses of multiple sequence alignments, and hierarchical relationships between protein subfamilies are performed.",
            "homepage": "http://www.lbgi.fr/pipealign",
            "biotoolsID": "pipealign",
            "biotoolsCURIE": "biotools:pipealign",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3510",
                "http://edamontology.org/topic_0157",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "akress@unistra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Unlicense",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T21:03:24.978595Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 123,
            "name": "DEPIB",
            "description": "Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline",
            "biotoolsID": "DEPIB",
            "biotoolsCURIE": "biotools:DEPIB",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Erwan Delage",
                    "email": "erwan.delage@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Solenne Dumont",
                    "email": "solenne.dumont@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0003-3237-7382",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Primary contact",
                        "Developer"
                    ],
                    "name": "Eric Charpentier",
                    "email": "eric.charpentier@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Contributor"
                    ],
                    "name": "Damien Vintache",
                    "email": "Damien.Vintache@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:40:03.286943Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 146,
            "name": "fqtools",
            "description": "A package that provides tools for efficient FASTQ files manipulation.",
            "homepage": "https://bioweb.pasteur.fr/packages/pack@fqtools@1.1",
            "biotoolsID": "fqtools",
            "biotoolsCURIE": "biotools:fqtools",
            "tool_type": [
                "Suite"
            ],
            "collection": [
                "fqtools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Nicolas Joly",
                    "email": "njoly@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Unlicense",
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2020-06-16T10:55:24Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": "ftp://ftp.pasteur.fr/pub/gensoft/projects/fqtools/README"
        },
        {
            "id": 134,
            "name": "Protomata",
            "description": "Motif search and discovery in protein sequences.",
            "homepage": "http://tools.genouest.org/tools/protomata/",
            "biotoolsID": "protomata",
            "biotoolsCURIE": "biotools:protomata",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1007/11564096_50"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://tools.genouest.org/tools/protomata/help",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 147,
            "name": "SortMeRNA",
            "description": "Sequence analysis tool for filtering, mapping and OTU-picking NGS reads.",
            "homepage": "https://bioinfo.cristal.univ-lille.fr/RNA/sortmerna/",
            "biotoolsID": "sortmerna",
            "biotoolsCURIE": "biotools:sortmerna",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "ELIXIR Trainer Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/biocore/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/sortmerna/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/sortmerna/sortmerna/wiki/User-manual-v4.3.2",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:49:42.747317Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 141,
            "name": "DroPNet",
            "description": "DroPNet is a webserver for generating and analyzing Drosophila protein-protein interaction networks. Input data is a list of genes from an experiment such as RNAi screen.",
            "homepage": "http://dropnet.isima.fr",
            "biotoolsID": "dropnet",
            "biotoolsCURIE": "biotools:dropnet",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_3957",
                "http://edamontology.org/topic_3523",
                "http://edamontology.org/topic_3678"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "RENAUD Yoan",
                    "email": "renaud@isima.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://dropnet.gred-clermont.fr/DroPNet_project/UserManual.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 72000,
            "last_update": "2018-12-10T12:58:56Z",
            "teams": [
                "AuBi"
            ],
            "source_repository": null
        },
        {
            "id": 169,
            "name": "BIONJ",
            "description": "This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.",
            "homepage": "http://www.atgc-montpellier.fr/bionj/",
            "biotoolsID": "bionj",
            "biotoolsCURIE": "biotools:bionj",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric RIVALS",
                    "email": "Eric.Rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~gascuel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/bionj/paper.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:15:50.001899Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 136,
            "name": "AutoGRAPH",
            "description": "Integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.",
            "homepage": "http://autograph.genouest.org/",
            "biotoolsID": "autograph",
            "biotoolsCURIE": "biotools:autograph",
            "tool_type": [
                "Web service"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Derrien T",
                    "email": "toma.derrien@gmail.com",
                    "url": "http://www-recomgen.univ-rennes1.fr/doggy.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://autograph.genouest.org/Tutorial.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:04:29.788401Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 180,
            "name": "Assemble2",
            "description": "Design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera.",
            "homepage": "http://bioinformatics.org/assemble/",
            "biotoolsID": "assemble2",
            "biotoolsCURIE": "biotools:assemble2",
            "tool_type": [
                "Web API"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btq321"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "BioCatalogue",
                    "email": null,
                    "url": "https://www.biocatalogue.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.bioinformatics.org/assemble/contacts.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://bioinformatics.org/assemble/",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:45:38.090886Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 183,
            "name": "SHOW",
            "description": "Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.",
            "homepage": "http://genome.jouy.inra.fr/ssb/SHOW/",
            "biotoolsID": "show",
            "biotoolsCURIE": "biotools:show",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://www.ssbgroup.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        }
    ]
}