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                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
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                    "note": null
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                {
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            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline",
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            ],
            "primary_publication": [
                "10.1038/s41598-017-14892-x"
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                    "name": "Eric Charpentier",
                    "email": "eric.charpentier@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/about-us/members/",
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                    "name": "Broad Institute",
                    "email": null,
                    "url": null,
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                    "note": "Some scripts of the pipeline regarding sample demultiplexing and UMI counting have been adapated and modified from this paper:\nXiong, Y., Soumillon, M., Wu, J. et al. A Comparison of mRNA Sequencing with Random Primed and 3′-Directed Libraries. Sci Rep 7, 14626 (2017)."
                },
                {
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                        "Developer"
                    ],
                    "name": "Solenne Dumont",
                    "email": "solenne.dumont@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
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                }
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            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
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            "last_update": "2024-11-24T14:40:06.421826Z",
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        },
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            "name": "AgroLD",
            "description": "The RDF Knowledge-based Database for plant molecular networks.",
            "homepage": "http://agrold.southgreen.fr/agrold/",
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            "tool_type": [
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                "http://edamontology.org/topic_3810"
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            "last_update": "2019-11-05T14:52:28Z",
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            ],
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        },
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            "id": 104,
            "name": "ANISEED",
            "description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.",
            "homepage": "https://www.aniseed.fr",
            "biotoolsID": "ANISEED",
            "biotoolsCURIE": "biotools:ANISEED",
            "tool_type": [
                "Database portal",
                "Web API",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
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                "http://edamontology.org/topic_3383",
                "http://edamontology.org/topic_3679",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_0194",
                "http://edamontology.org/topic_3064",
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                "http://edamontology.org/topic_3308"
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                "10.1093/nar/gkz955",
                "10.1093/nar/gkx1108",
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                "10.1093/nar/gkv966"
            ],
            "operating_system": [
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                    "name": null,
                    "email": "contact@aniseed.fr",
                    "url": null,
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                    "url": null,
                    "orcidid": null,
                    "gridid": null,
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                },
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                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
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                    "gridid": null,
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                },
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                    "url": "http://www.crbm.cnrs.fr/en/team/lemaire/",
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                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://www.aniseed.fr/api",
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            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
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            "last_update": "2023-09-25T14:25:18.910230Z",
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        },
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            "name": "BIII (BioImage Informatics Index, biii.eu)",
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            "homepage": "https://biii.eu",
            "biotoolsID": "BISE",
            "biotoolsCURIE": "biotools:BISE",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "NEUBIAS"
            ],
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                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3382",
                "http://edamontology.org/topic_3063",
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                        "Provider"
                    ],
                    "name": "NEUBIAS Network of Bioimage Analysts",
                    "email": null,
                    "url": "https://neubias.eu",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "COST action having supported the creation and curation of this database"
                },
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                    ],
                    "name": "Perrine Paul-Gilloteaux",
                    "email": "perrine.paul-gilloteaux@univ-nantes.fr",
                    "url": null,
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                    "gridid": null,
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                    "name": "Kota Miura",
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                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6926-191X",
                    "gridid": null,
                    "typeEntity": "Person",
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                    ],
                    "name": "Chong Zhang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
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                    "url": null,
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                    "gridid": null,
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                    "gridid": null,
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                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-2411-0429",
                    "gridid": null,
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                    "url": "http://biii.eu/show-taggers",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
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                }
            ],
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            "documentation": "https://github.com/NeuBIAS/bise/wiki",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-03-26T15:45:10Z",
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            "name": "ChagasDB",
            "description": "Manual-curated database regrouping published results referenced in Pubmed.",
            "homepage": "https://chagasdb.tagc.univ-amu.fr",
            "biotoolsID": "chagasdb",
            "biotoolsCURIE": "biotools:chagasdb",
            "tool_type": [
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            ],
            "collection": [],
            "scientific_topics": [
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                "http://edamontology.org/topic_3305",
                "http://edamontology.org/topic_3421",
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            "operating_system": [
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                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
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                    "name": "Edecio Cunha-Neto",
                    "email": "edecunha@gmail.com",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3699-3345",
                    "gridid": null,
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                },
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                    "gridid": null,
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                {
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                    "orcidid": "https://orcid.org/0000-0002-5269-8813",
                    "gridid": null,
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            ],
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            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:25:34.821693Z",
            "teams": [],
            "source_repository": "https://github.com/TAGC-ComplexDisease/ChagasDB"
        },
        {
            "id": 91,
            "name": "DataDiscovery",
            "description": "DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.\n\nThis tool is expected to be easily customizable for specific filters, environments, or data schemas. Its current implementations supported by URGI are: WheatIS, Plant, RARe.",
            "homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
            "biotoolsID": "DataDiscovery",
            "biotoolsCURIE": "biotools:DataDiscovery",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
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                "FR"
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                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
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                "10.3835/plantgenome2015.06.0038"
            ],
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            ],
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                {
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                        "Support"
                    ],
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                    "email": "urgi-support@inrae.fr",
                    "url": null,
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                    "gridid": null,
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                    "note": null
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            ],
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            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-07-29T13:42:39.375595Z",
            "teams": [
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            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/data-discovery"
        },
        {
            "id": 90,
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            "homepage": "https://urgi.versailles.inrae.fr/faidare/",
            "biotoolsID": "faidare",
            "biotoolsCURIE": "biotools:faidare",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
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                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
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                        "Support"
                    ],
                    "name": "URGI support",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/faidare/help",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-09-02T05:04:34.812991Z",
            "teams": [
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            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/faidare"
        },
        {
            "id": 258,
            "name": "FAIR-Checker",
            "description": "FAIR-Checker is a tool aimed at assessing FAIR principles and empowering data provider to enhance the quality of their digital resources. Data providers and consumers can check how FAIR are web resources. Developers can explore and inspect metadata exposed in web resources.",
            "homepage": "https://fair-checker.france-bioinformatique.fr",
            "biotoolsID": "fair-checker",
            "biotoolsCURIE": "biotools:fair-checker",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3316",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [
                "10.1186/s13326-023-00289-5"
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            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
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                "Command-line tool"
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            "scientific_topics": [
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                "http://edamontology.org/topic_3300",
                "http://edamontology.org/topic_3673",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_0749"
            ],
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            ],
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                "Linux"
            ],
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                },
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                    ],
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                    "name": "Camille Berthelot",
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            "name": "Galaxy France",
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            "homepage": "https://usegalaxy.fr/",
            "biotoolsID": "galaxy_france",
            "biotoolsCURIE": "biotools:galaxy_france",
            "tool_type": [],
            "collection": [
                "COVID-19"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3955",
                "http://edamontology.org/topic_3474",
                "http://edamontology.org/topic_0121",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_3172",
                "http://edamontology.org/topic_0091"
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            "operating_system": [],
            "tool_credit": [
                {
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                    "name": "IFB - Institut Français de Bioinformatique",
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                    "url": "https://www.france-bioinformatique.fr/en/home/",
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                },
                {
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                    "name": "ANR RENABI",
                    "email": null,
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                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
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                    ],
                    "name": "IFB Core Cluster",
                    "email": null,
                    "url": "https://www.france-bioinformatique.fr/en/ifb-core-cluster/",
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                    "typeEntity": "Project",
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                }
            ],
            "tool_licence": null,
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            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-04-24T09:37:17.765772Z",
            "teams": [
                "ABiMS",
                "IFB Core"
            ],
            "source_repository": "https://gitlab.com/ifb-elixirfr/usegalaxy-fr/infrastructure/"
        }
    ]
}