GET /api/tool/?format=api&offset=140&ordering=tool_licence
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=tool_licence",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=tool_licence",
    "results": [
        {
            "id": 22,
            "name": "ProDom protein domain database",
            "description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
            "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
            "biotoolsID": "prodom",
            "biotoolsCURIE": "biotools:prodom",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0736",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/28.1.267"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:21:05.113834Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 243,
            "name": "RAPPAS",
            "description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
            "homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
            "biotoolsID": "RAPPAS",
            "biotoolsCURIE": "biotools:RAPPAS",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btz068"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Linard",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:27.880847Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 198,
            "name": "RASTA-Bacteria",
            "description": "Automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.",
            "homepage": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/",
            "biotoolsID": "rasta-bacteria",
            "biotoolsCURIE": "biotools:rasta-bacteria",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0154",
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Frédérique Hubler",
                    "email": "fhubler@univ-rennes1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Emeric Sevin",
                    "email": "esevin@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/index.php?page=faq",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:14:59.683127Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 151,
            "name": "ReproGenomics Viewer",
            "description": "The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community.",
            "homepage": "http://rgv.genouest.org",
            "biotoolsID": "reprogenomics_viewer",
            "biotoolsCURIE": "biotools:reprogenomics_viewer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3420"
            ],
            "primary_publication": [
                "10.1093/nar/gkv345"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "irisa.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Thomas Darde",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Frédéric Chalmel",
                    "email": "frederic.chalmel@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Olivier Sallou",
                    "email": "olivier.sallou@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rgv.genouest.org/tuto.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:22:51.040462Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 183,
            "name": "SHOW",
            "description": "Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.",
            "homepage": "http://genome.jouy.inra.fr/ssb/SHOW/",
            "biotoolsID": "show",
            "biotoolsCURIE": "biotools:show",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://www.ssbgroup.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        },
        {
            "id": 83,
            "name": "Phylogeny.fr",
            "description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
            "homepage": "http://www.phylogeny.fr/",
            "biotoolsID": "phylogeny.fr",
            "biotoolsCURIE": "biotools:phylogeny.fr",
            "tool_type": [
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293"
            ],
            "primary_publication": [
                "10.1093/nar/gkn180"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Alexis Dereeper",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Valentin Guignon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.phylogeny.fr/contacts.cgi",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IGS",
                    "email": null,
                    "url": "http://www.igs.cnrs-mrs.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.phylogeny.fr/documentation.cgi",
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:33:44.667229Z",
            "teams": [
                "ATGC",
                "PACA-Bioinfo"
            ],
            "source_repository": null
        },
        {
            "id": 116,
            "name": "SulfAtlas",
            "description": "SulfAtlas describes the family and sub-families of structurally-related sulfatases. Sub-families are created based on phylogenetic analyses and essentially correspond to different substrate specificities",
            "homepage": "https://sulfatlas.sb-roscoff.fr/",
            "biotoolsID": "SulfAtlas",
            "biotoolsCURIE": "biotools:SulfAtlas",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3068",
                "http://edamontology.org/topic_0154",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Tristan Barbeyron",
                    "email": "tristan.barbeyron@sb-roscoff.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Gurvan Michel",
                    "email": "gurvan@sb-roscoff.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3009-6205",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Mark Stam",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Pernelle Lelièvre",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2023-01-25T21:30:47.860975Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 184,
            "name": "VAST",
            "description": "Tool for viewing protein structure neighbours.",
            "homepage": "http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml",
            "biotoolsID": "vast",
            "biotoolsCURIE": "biotools:vast",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0736",
                "http://edamontology.org/topic_2814",
                "http://edamontology.org/topic_0082",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Stephen HBryant",
                    "email": "bryant@ncbi.nlm.nih.gov",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.ncbi.nlm.nih.gov/Structure/VAST/vasthelp.html",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2021-04-25T13:21:04Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        },
        {
            "id": 173,
            "name": "Tango",
            "description": "A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.",
            "homepage": "http://tango.crg.es/",
            "biotoolsID": "tango",
            "biotoolsCURIE": "biotools:tango",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3510",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://tango.crg.es/support.jsp",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://tango.crg.es/Tango_Handbook.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:45Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": null
        },
        {
            "id": 148,
            "name": "Vidjil",
            "description": "Open-source platform for the interactive analysis of high-throughput sequencing data from lymphocyte recombinations. It contains an algorithm gathering reads into clonotypes according to their V(D)J junctions, a web application made of a sample, experiment and patient database and a visualization for the analysis of clonotypes along the time.",
            "homepage": "http://www.vidjil.org/",
            "biotoolsID": "vidjil",
            "biotoolsCURIE": "biotools:vidjil",
            "tool_type": [
                "Web application",
                "Web interface",
                " Command-line"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0804",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1371/journal.pone.0172249"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Support",
                    "email": "contact@vidjil.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/vidjil/vidjil",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 242,
            "name": "WAVES",
            "description": "WAVES is a web application dedicated to bioinformatic tool integration. It provides an efficient way to implement a service for any bioinformatic software. Such services are automatically made available in three ways: web pages, web forms to include in remote websites, and a RESTful web services API to access remotely from applications. In order to fulfill the service’s computational needs, WAVES can perform computation on various resources and environments, such as Galaxy instances.",
            "homepage": "http://www.atgc-montpellier.fr/waves/",
            "biotoolsID": "WAVES",
            "biotoolsCURIE": "biotools:WAVES",
            "tool_type": [
                "Bioinformatics portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/bty639"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Maintainer"
                    ],
                    "name": "Marc Chakiachvili",
                    "email": "mchakiachvili@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Vincent Lefort",
                    "email": "vincent.lefort@lirmm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://waves-core.readthedocs.io/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 128,
            "name": "Tedna",
            "description": "A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.",
            "homepage": "http://urgi.versailles.inra.fr/Tools/Tedna",
            "biotoolsID": "tedna",
            "biotoolsCURIE": "biotools:tedna",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "urgi-contact@versailles.inra.fr",
                    "url": "https://urgi.versailles.inra.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 557,
            "citations": null,
            "annual_visits": 1872,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 124,
            "name": "TOGGLE",
            "description": "Toolbox for generic NGS analyses.",
            "homepage": "https://github.com/SouthGreenPlatform/TOGGLE",
            "biotoolsID": "toggle",
            "biotoolsCURIE": "biotools:toggle",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Support",
                    "email": "toggle@ird.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/SouthGreenPlatform/TOGGLE",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 142,
            "name": "SeaView",
            "description": "Multiplatform graphical user interface designed to facilitate alignment and phylogenic tree building from molecular sequences.",
            "homepage": "http://doua.prabi.fr/software/seaview",
            "biotoolsID": "seaview",
            "biotoolsCURIE": "biotools:seaview",
            "tool_type": [
                "Command-line tool",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1093/molbev/msp259"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IFB ELIXIR-FR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Manolo Gouy",
                    "email": "mgouy@biomserv.uni-lyon1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://doua.prabi.fr/main/index",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:49:59.006607Z",
            "teams": [
                "PRABI-Lyon-Grenoble"
            ],
            "source_repository": null
        },
        {
            "id": 182,
            "name": "S-MART",
            "description": "This tool manages your RNA-Seq and ChIP-seq data.",
            "homepage": "http://urgi.versailles.inra.fr/Tools/S-MART",
            "biotoolsID": "s-mart",
            "biotoolsCURIE": "biotools:s-mart",
            "tool_type": [
                "Suite"
            ],
            "collection": [
                "S-MART"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_3169",
                "http://edamontology.org/topic_0092"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Matthias Zytnicki",
                    "email": "matthias.zytnicki@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://urgi.versailles.inra.fr/download/s-mart/doc.pdf",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": 267,
            "citations": null,
            "annual_visits": 474,
            "last_update": "2024-11-25T14:22:04.089851Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 2,
            "name": "FatAndMuscleDB",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 147,
            "name": "SortMeRNA",
            "description": "Sequence analysis tool for filtering, mapping and OTU-picking NGS reads.",
            "homepage": "https://bioinfo.cristal.univ-lille.fr/RNA/sortmerna/",
            "biotoolsID": "sortmerna",
            "biotoolsCURIE": "biotools:sortmerna",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "ELIXIR Trainer Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/sortmerna/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/biocore/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/sortmerna/sortmerna/wiki/User-manual-v4.3.2",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:49:42.747317Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 118,
            "name": "SouthGreen_Galaxy Not found.",
            "description": "A Galaxy instance focused on agriculture, food, biodiversity and environment, from the Agropolis campus in France.",
            "homepage": "http://galaxy.southgreen.fr/galaxy",
            "biotoolsID": "SouthGreen_Galaxy",
            "biotoolsCURIE": "biotools:SouthGreen_Galaxy",
            "tool_type": [
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": "https://southgreen.fr/content/galaxy-tool",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-01-24T09:53:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 14,
            "name": "UMD-Predictor",
            "description": "A tool that provides a combinatorial approach to identify potential pathogenic variations, that associates the following data: localization within the protein, conservation, biochemical properties of the mutant and wild-type residues, and the potential impact of the variation on mRNA.",
            "homepage": "http://umd-predictor.eu",
            "biotoolsID": "umd-predictor",
            "biotoolsCURIE": "biotools:umd-predictor",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "Developed_RD-Connect",
                "RD-Connect",
                "Rare Disease",
                "ELIXIR-FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3574",
                "http://edamontology.org/topic_0199",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_3512"
            ],
            "primary_publication": [
                "10.1002/humu.22965"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christophe Beroud",
                    "email": "christophe.beroud@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "David Salgado",
                    "email": "david.salgado@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-07-24T20:06:47Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 89,
            "name": "Workflow4Metabolomics",
            "description": "First fully open-source and collaborative online platform for computational metabolomics. It includes preprocessing, normalization, quality control, statistical analysis of LC/MS, FIA-MS, GC/MS and NMR data.",
            "homepage": "https://workflow4metabolomics.org/",
            "biotoolsID": "workflow4metabolomics",
            "biotoolsCURIE": "biotools:workflow4metabolomics",
            "tool_type": [
                "Bioinformatics portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_3172",
                "http://edamontology.org/topic_2259"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btu813"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "MetaboHUB - National infrastructure in metabolomics & fluxomics",
                    "email": null,
                    "url": "https://www.metabohub.fr/home.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Christophe Caron",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Christophe Duperier",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Franck Giacomoni",
                    "email": "franck.giacomoni@inrae.fr",
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": "https://orcid.org/0000-0001-6063-4214",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Gildas Le Corguillé",
                    "email": "lecorguille@sb-roscoff.fr",
                    "url": "http://abims.sb-roscoff.fr",
                    "orcidid": "https://orcid.org/0000-0003-1742-9711",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie Tremblay-Franco",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Jean-François Martin",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierrick Roger-Melee",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": "https://orcid.org/0000-0001-8177-4873",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Yann Guitton",
                    "email": null,
                    "url": "https://www.laberca.org/plateforme-analytique/presentation/",
                    "orcidid": "https://orcid.org/0000-0002-4479-0636",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Cécile Canlet",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Misharl Monsoor",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Etienne A. Thévenot",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": "https://orcid.org/0000-0003-1019-4577",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Mélanie Pétéra",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Workflow4Metabolomics Team",
                    "email": "contact@workflow4metabolomics.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Marion Landi",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "IFB - Institut Français de Bioinformatique",
                    "email": null,
                    "url": "https://www.france-bioinformatique.fr/en",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierre Pericard",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alexis Delabrière",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Sophie Goulitquer",
                    "email": null,
                    "url": "http://www.sb-roscoff.fr/en/research-and-training-centre-marine-biology-and-oceanography/services/technological-core-facilities/mass-spectrometry-core-facility",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://workflow4metabolomics.org/howto",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-12-16T14:17:30Z",
            "teams": [
                "ABiMS"
            ],
            "source_repository": "https://github.com/workflow4metabolomics"
        }
    ]
}