GET /api/tool/?format=api&offset=140&ordering=collection
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 229,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=collection",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=collection",
    "results": [
        {
            "id": 173,
            "name": "Tango",
            "description": "A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.",
            "homepage": "http://tango.crg.es/",
            "biotoolsID": "tango",
            "biotoolsCURIE": "biotools:tango",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_3510",
                "http://edamontology.org/topic_0081"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://tango.crg.es/support.jsp",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://tango.crg.es/Tango_Handbook.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:45Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": null
        },
        {
            "id": 188,
            "name": "SyntTax",
            "description": "A web server linking synteny to prokaryotic taxonomy.",
            "homepage": "http://archaea.u-psud.fr/SyntTax/",
            "biotoolsID": "synttax",
            "biotoolsCURIE": "biotools:synttax",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_0204",
                "http://edamontology.org/topic_3053"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jacques Oberto",
                    "email": "jacques.oberto@igmors.u-psud.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://archaea.u-psud.fr/SyntTax/SyntTax_Help.html",
            "maturity": null,
            "cost": null,
            "unique_visits": 1707,
            "citations": null,
            "annual_visits": 3829,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "EBIO"
            ],
            "source_repository": null
        },
        {
            "id": 150,
            "name": "BioMAJ",
            "description": "BioMAJ is a workflow engine dedicated to data synchronization and processing. The Software automates the update cycle and the supervision of the locally mirrored databank repository.",
            "homepage": "http://biomaj.genouest.org/",
            "biotoolsID": "biomaj",
            "biotoolsCURIE": "biotools:biomaj",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btn325"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest platform",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Olivier Sallou",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "AGPL-3.0",
            "documentation": "http://biomaj.readthedocs.io/en/latest/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T16:17:07.096336Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 63,
            "name": "BAliBASE",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 183,
            "name": "SHOW",
            "description": "Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.",
            "homepage": "http://genome.jouy.inra.fr/ssb/SHOW/",
            "biotoolsID": "show",
            "biotoolsCURIE": "biotools:show",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://www.ssbgroup.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        },
        {
            "id": 260,
            "name": "CulebrONT",
            "description": "CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.",
            "homepage": "https://github.com/SouthGreenPlatform/CulebrONT_pipeline",
            "biotoolsID": "culebront",
            "biotoolsCURIE": "biotools:culebront",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_0621"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-01-10T14:00:06.343876Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 272,
            "name": "IMGT-ONTOLOGY",
            "description": "IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, \"IDENTIFICATION\", \"CLASSIFICATION\", \"DESCRIPTION\", \"NUMEROTATION\", \"LOCALIZATION\", \"ORIENTATION\" and \"OBTENTION\". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized.",
            "homepage": "http://www.imgt.org/IMGTindex/ontology.php",
            "biotoolsID": "IMGT-ONTOLOGY",
            "biotoolsCURIE": "biotools:IMGT-ONTOLOGY",
            "tool_type": [
                "Ontology"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3930",
                "http://edamontology.org/topic_3948"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Véronique Giudicelli",
                    "email": "veronique.giudicelli@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Patrice Duroux",
                    "email": "patrice.duroux@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie-Paule Lefranc",
                    "email": "marie-paule.lefranc@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Sofia Kossida",
                    "email": "sofia.kossida@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/IMGTindex/ontology.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:20.932052Z",
            "teams": [
                "IMGT"
            ],
            "source_repository": "http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY"
        },
        {
            "id": 263,
            "name": "TrEMOLO",
            "description": "Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.",
            "homepage": "https://github.com/DrosophilaGenomeEvolution/TrEMOLO",
            "biotoolsID": "tremolo",
            "biotoolsCURIE": "biotools:tremolo",
            "tool_type": [
                "Workflow",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0798",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_3175"
            ],
            "primary_publication": [
                "10.1186/s13059-023-02911-2"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Anna-Sophie Fiston-Lavier",
                    "email": "anna-sophie.fiston-lavier@umontpellier.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-7306-6532",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Séverine Chambeyron",
                    "email": "severine.chambeyron@igh.cnrs.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-2775-6556",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:41:13.039486Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://dataverse.ird.fr/dataverse/tremolo_data"
        },
        {
            "id": 144,
            "name": "SynTView",
            "description": "Comparative and interactive viewer for microbial genomes, designed to run as either a web-based tool (Flash technology) or a desktop application (AIR environment). The basis of the program is a generic genome browser with sub-maps holding information about genomic objects. The software is characterized by the presentation of syntenic organisations of microbial genomes and the visualization of polymorphism data along these genomes; these features are accessible to the user in an integrated way.",
            "homepage": "http://genopole.pasteur.fr/SynTView/",
            "biotoolsID": "syntview",
            "biotoolsCURIE": "biotools:syntview",
            "tool_type": [
                "Web application",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_0797"
            ],
            "primary_publication": [
                "10.1186/1471-2105-14-277"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "plechat@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "LGPL-3.0",
            "documentation": "http://hub18.hosting.pasteur.fr/SynTView/documentation/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2021-05-19T14:52:04Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": null
        },
        {
            "id": 7,
            "name": "PhROGs",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 264,
            "name": "PanExplorer",
            "description": "A web-based tool for exploratory analysis and visualization of bacterial pan-genomes.",
            "homepage": "http://panexplorer.southgreen.fr",
            "biotoolsID": "panexplorer",
            "biotoolsCURIE": "biotools:panexplorer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3382",
                "http://edamontology.org/topic_3299",
                "http://edamontology.org/topic_3175"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Alexis Dereeper",
                    "email": "alexis.dereeper@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8120-8409",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Damien F Meyer",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Marilyne Summo",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T15:26:52.796766Z",
            "teams": [
                "South Green"
            ],
            "source_repository": "https://github.com/SouthGreenPlatform/PanExplorer"
        },
        {
            "id": 276,
            "name": "ODAMNet",
            "description": "A Python package to study molecular relationship between environmental factors and rare diseases.",
            "homepage": "https://pypi.org/project/ODAMNet/",
            "biotoolsID": "odamnet",
            "biotoolsCURIE": "biotools:odamnet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Morgane Térézol",
                    "email": "morgane.terezol@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4090-2573",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Anaïs Baudot",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-0885-7933",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Ozan Ozisik",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5980-8002",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://odamnet.readthedocs.io/en/latest/",
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:02:02.850639Z",
            "teams": [],
            "source_repository": "https://github.com/MOohTus/ODAMNet"
        },
        {
            "id": 151,
            "name": "ReproGenomics Viewer",
            "description": "The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community.",
            "homepage": "http://rgv.genouest.org",
            "biotoolsID": "reprogenomics_viewer",
            "biotoolsCURIE": "biotools:reprogenomics_viewer",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3420"
            ],
            "primary_publication": [
                "10.1093/nar/gkv345"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Thomas Darde",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "irisa.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Olivier Sallou",
                    "email": "olivier.sallou@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Frédéric Chalmel",
                    "email": "frederic.chalmel@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rgv.genouest.org/tuto.html",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:22:51.040462Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 270,
            "name": "IMGT V-QUEST",
            "description": "IMGT/V-QUEST is the IMGT® tool for nucleotide sequence alignment and analysis of immunoglobulin (IG) or antibody and T cell receptor (TR) variable domains, integrates IMGT/JunctionAnalysis, IMGT/Automat and IMGT/Collier-de-Perles.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
            "homepage": "http://www.imgt.org/IMGT_vquest",
            "biotoolsID": "imgt_v-quest",
            "biotoolsCURIE": "biotools:imgt_v-quest",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_3930",
                "http://edamontology.org/topic_3948",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie-Paule Lefranc",
                    "email": "Marie-Paule.Lefranc@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Véronique Giudicelli",
                    "email": "veronique.giudicelli@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Patrice Duroux",
                    "email": "patrice.duroux@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Sofia Kossida",
                    "email": "sofia.kossida@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/IMGT_vquest/user_guide",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T13:59:09.724903Z",
            "teams": [
                "IMGT"
            ],
            "source_repository": null
        },
        {
            "id": 268,
            "name": "ChagasDB",
            "description": "Manual-curated database regrouping published results referenced in Pubmed.",
            "homepage": "https://chagasdb.tagc.univ-amu.fr",
            "biotoolsID": "chagasdb",
            "biotoolsCURIE": "biotools:chagasdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3334",
                "http://edamontology.org/topic_3305",
                "http://edamontology.org/topic_3421"
            ],
            "primary_publication": [],
            "operating_system": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Edecio Cunha-Neto",
                    "email": "edecunha@gmail.com",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3699-3345",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Lionel Spinelli",
                    "email": "lionel.spinelli@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9228-8141",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Christophe Chevillard",
                    "email": "christophe.chevillard@univ-amu.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-5269-8813",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:25:34.821693Z",
            "teams": [],
            "source_repository": "https://github.com/TAGC-ComplexDisease/ChagasDB"
        },
        {
            "id": 20,
            "name": "PRIAM",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 25,
            "name": "secreton",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 26,
            "name": "ppRNome Browser",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 137,
            "name": "SHAMAN",
            "description": "SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. It is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, as suggested in [McMurdie and Holmes 2014, Jonsson2016]. It robustly identifies the differential abundant genera with the Generalized Linear Model implemented in DESeq2 [Love 2014].",
            "homepage": "http://shaman.c3bi.pasteur.fr/",
            "biotoolsID": "shaman",
            "biotoolsCURIE": "biotools:shaman",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3174"
            ],
            "primary_publication": [
                "10.1073/pnas.1523899113"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierre Lechat",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/member/pierre-lechat/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Amine Ghozlane",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/member/amine-ghozlane/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "https://research.pasteur.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "C3BI",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/center/c3bi/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Bioinformatics and Biostatistics Hub",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "SHAMAN team",
                    "email": "shaman@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/software/shaman-shiny-application-for-metagenomic-analysis/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Stevenn Volant",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/member/stevenn-volant/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Hugo Varet",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/member/hugo-varet/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "http://shaman.c3bi.pasteur.fr/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 742,
            "citations": null,
            "annual_visits": 1855,
            "last_update": "2025-10-23T10:46:59.953305Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": "https://github.com/aghozlane/shaman"
        },
        {
            "id": 265,
            "name": "MetamORF",
            "description": "A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta-analysis.\n\nMetamORF: A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta analysis.",
            "homepage": "http://metamorf.hb.univ-amu.fr/",
            "biotoolsID": "metamorf",
            "biotoolsCURIE": "biotools:metamorf",
            "tool_type": [
                "Command-line tool",
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0659"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "Christine Brun",
                    "email": "christine-g.brun@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-22T07:55:26Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": "https://github.com/TAGC-NetworkBiology/MetamORF"
        }
    ]
}