HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 207,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=annual_visits",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=annual_visits",
"results": [
{
"id": 73,
"name": "mosaic",
"description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
"homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
"biotoolsID": "mosaic",
"biotoolsCURIE": "biotools:mosaic",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3056",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leithen K. M’Gonigle",
"email": "mgonigle@zoology.ubc.ca",
"url": "http://www.zoology.ubc.ca/~fitzjohn",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:20:53.826983Z",
"teams": [],
"source_repository": null
},
{
"id": 23,
"name": "Multi-Genome Genolist",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 244,
"name": "NGphylogeny.fr",
"description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
"homepage": "https://ngphylogeny.fr/",
"biotoolsID": "NGphylogeny.fr",
"biotoolsCURIE": "biotools:NGphylogeny.fr",
"tool_type": [
"Web application",
"Workflow",
"Bioinformatics portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0091"
],
"primary_publication": [
"10.1093/nar/gkz303"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer",
"Maintainer",
"Primary contact"
],
"name": "Frédéric Lemoine",
"email": "frederic.lemoine@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Damien Correia",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Fabien Mareuil",
"email": "fmareuil@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact",
"Contributor"
],
"name": "Vincent Lefort",
"email": "vincent.lefort@lirmm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://ngphylogeny.fr/documentation",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:59:31.390401Z",
"teams": [],
"source_repository": null
},
{
"id": 68,
"name": "NORINE",
"description": "NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis.",
"homepage": "http://norine.univ-lille.fr/norine/",
"biotoolsID": "NORINE",
"biotoolsCURIE": "biotools:NORINE",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3332",
"http://edamontology.org/topic_3301",
"http://edamontology.org/topic_3307",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_3071"
],
"primary_publication": [
"10.1093/nar/gkz1000"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": "Norine team",
"email": "norine@univ-lille.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "CC-BY-NC-SA-4.0",
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-07-21T13:25:21.706482Z",
"teams": [
"Bilille"
],
"source_repository": null
},
{
"id": 32,
"name": "Orphanet",
"description": "Information on rare diseases and orphan drugs.",
"homepage": "http://www.orpha.net/consor/cgi-bin/index.php",
"biotoolsID": "orphanet",
"biotoolsCURIE": "biotools:orphanet",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Rare Disease",
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_3325"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.orpha.net/consor/cgi-bin/Directory_Contact.php?lng=EN",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.orpha.net/consor/cgi-bin/Education_EducationTools.php?stapage=HM_BLOC_HEADER_HELP_SITEMAP&lng=EN",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:58:27.798370Z",
"teams": [],
"source_repository": null
},
{
"id": 20,
"name": "PRIAM",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 65,
"name": "OrthoInspector",
"description": "Software system incorporating an original algorithm for the rapid detection of orthology and inparalogy relations between different species.",
"homepage": "http://lbgi.igbmc.fr/orthoinspector/",
"biotoolsID": "orthoinspector",
"biotoolsCURIE": "biotools:orthoinspector",
"tool_type": [
"Database portal",
"Desktop application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Odile Lecompte",
"email": "odile.lecompte@unistra.fr",
"url": "http://alnitak.u-strasbg.fr/lbgi/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://lbgi.igbmc.fr/orthoinspector/index.php?option=com_content&view=article&id=50:tutorial-prepare-data-to-create-your-own-database&catid=3:tutorials&Itemid=6",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T13:55:18.202290Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 44,
"name": "Molligen",
"description": "Database dedicated to the comparative genomics of bacteria belonging to the class Mollicutes. It provides annotated sequence data and analysis for 72 genomes belonging to 51 species. The database provides genome and genetic element pages, homology relationship defined by various methods, pre-computed statistics, metabolic pathways, and a huge collection of tools for exploring and comparing genomes.",
"homepage": "https://services.cbib.u-bordeaux.fr/molligen4/",
"biotoolsID": "molligen",
"biotoolsCURIE": "biotools:molligen",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_3301"
],
"primary_publication": [
"10.1093/nar/gkh114"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Alain Blanchard",
"email": null,
"url": null,
"orcidid": "http://orcid.org/0000-0003-4223-5185",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Centre de Bioinformatique de Bordeaux (CBiB)",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Aurelien Barré",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Pascal Sirand-Pugnet",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Université de Bordeaux",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [],
"name": "INRA",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Aurélien Barré",
"email": "aurelien.barre@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Support"
],
"name": "Aurelien Barré",
"email": "aurelien.barre@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "u-bordeaux.fr",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "http://services.cbib.u-bordeaux.fr/molligen/CREDITS/data/MolliGen_Tutorial_2012.pdf",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T15:35:08.058762Z",
"teams": [
"CBiB"
],
"source_repository": null
},
{
"id": 18,
"name": "HuGChip",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 17,
"name": "ECOD",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 16,
"name": "dbWFA",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 8,
"name": "Plant DataDiscovery",
"description": "The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world.\n\nThe web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an implementation of DataDiscovery.",
"homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
"biotoolsID": "Plant_DataDiscovery",
"biotoolsCURIE": "biotools:Plant_DataDiscovery",
"tool_type": [
"Database portal",
"Web service",
"Web API",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI"
],
"scientific_topics": [
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_0610",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_3810"
],
"primary_publication": [
"10.1186/s13059-018-1491-4"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Support",
"Primary contact"
],
"name": "Support service",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "BSD-3-Clause",
"documentation": "https://urgi.versailles.inrae.fr/data-discovery/about",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-12-12T16:19:23.574076Z",
"teams": [],
"source_repository": null
},
{
"id": 22,
"name": "ProDom protein domain database",
"description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
"homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
"biotoolsID": "prodom",
"biotoolsCURIE": "biotools:prodom",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0736"
],
"primary_publication": [
"10.1093/nar/28.1.267"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:21:05.113834Z",
"teams": [],
"source_repository": null
},
{
"id": 15,
"name": "Locus Specific Databases UMD",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 243,
"name": "RAPPAS",
"description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
"homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
"biotoolsID": "RAPPAS",
"biotoolsCURIE": "biotools:RAPPAS",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_0637",
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_3174"
],
"primary_publication": [
"10.1093/bioinformatics/btz068"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Developer"
],
"name": "Benjamin Linard",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:59:27.880847Z",
"teams": [],
"source_repository": null
},
{
"id": 92,
"name": "RARe",
"description": "RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultivated plants, wild species related to domestic animals, forest trees, micro-organisms of agronomic or agri-food interest, micro-organisms and environmental organisms.\nThe purpose of this web portal is to facilitate the discoverability of these data. \nRARe search is an implementation of DataDiscovery.",
"homepage": "https://urgi.versailles.inrae.fr/rare/",
"biotoolsID": "RARe",
"biotoolsCURIE": "biotools:RARe",
"tool_type": [
"Database portal",
"Web service",
"Web API",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI"
],
"scientific_topics": [
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_0610",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_3810"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Support",
"Primary contact"
],
"name": "Support service",
"email": "urgi-support@inrae.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "BSD-3-Clause",
"documentation": "https://urgi.versailles.inrae.fr/rare/about",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-09-02T05:04:36.924340Z",
"teams": [
"PlantBioinfoPF"
],
"source_repository": null
},
{
"id": 198,
"name": "RASTA-Bacteria",
"description": "Automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.",
"homepage": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/",
"biotoolsID": "rasta-bacteria",
"biotoolsCURIE": "biotools:rasta-bacteria",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3301"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Emeric Sevin",
"email": "esevin@ebi.ac.uk",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Frédérique Hubler",
"email": "fhubler@univ-rennes1.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/index.php?page=faq",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T16:14:59.683127Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 9,
"name": "remap",
"description": "Display restriction enzyme binding sites in a nucleotide sequence.",
"homepage": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
"biotoolsID": "remap",
"biotoolsCURIE": "biotools:remap",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [
"EMBOSS"
],
"scientific_topics": [
"http://edamontology.org/topic_3125"
],
"primary_publication": [
"10.1016/S0168-9525(00)02024-2"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "EMBOSS Contributors",
"email": null,
"url": "http://emboss.open-bio.org/html/use/pr01s01.html",
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "EMBL-EBI",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "UK MRC",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Wellcome Trust",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "UK BBSRC",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "EMBOSS",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Support"
],
"name": "EMBOSS",
"email": "emboss@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "emboss@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "emboss-bug@emboss.open-bio.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://emboss.open-bio.org/rel/rel6/apps/remap.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-10T12:58:55Z",
"teams": [
"TAGC-BU"
],
"source_repository": "http://emboss.open-bio.org/html/adm/ch01s01.html"
},
{
"id": 105,
"name": "REPET",
"description": "The REPET package integrates bioinformatics pipelines dedicated to detect, annotate and analyze transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii)\n TEannot, which mines a genome with a library of TE sequences, for instance the one produced by the TEdenovo pipeline, to provide TE annotations exported into GFF3 files.",
"homepage": "https://urgi.versailles.inrae.fr/Tools/REPET",
"biotoolsID": "repet",
"biotoolsCURIE": "biotools:repet",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019",
"URGI",
"REPET",
"PlantBioinfoPF"
],
"scientific_topics": [
"http://edamontology.org/topic_0157",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_0097"
],
"primary_publication": [
"10.1371/journal.pone.0091929",
"10.1371/journal.pone.0016526",
"10.1371/journal.pcbi.0010022",
"10.1007/s00239-003-0007-2"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor",
"Maintainer",
"Contributor",
"Support",
"Developer",
"Provider"
],
"name": "URGI",
"email": "urgi-repet@versailles.inra.fr",
"url": "http://urgi.versailles.inra.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
},
{
"type_role": [
"Developer",
"Contributor",
"Maintainer",
"Provider",
"Support",
"Documentor"
],
"name": "URGI",
"email": "urgi-repet@versailles.inrae.fr",
"url": "http://urgi.versailles.inrae.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": "This tool has a \"Numero de depot APP\": FR 001 480007 000 R P 2008 000 31 235"
}
],
"tool_licence": "CECILL-2.0",
"documentation": "https://urgi.versailles.inrae.fr/Tools/REPET",
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T13:47:59.918995Z",
"teams": [
"PlantBioinfoPF"
],
"source_repository": "https://urgi.versailles.inrae.fr/download/repet/"
},
{
"id": 12,
"name": "Listeriomics : Systems Biology of Listeria",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
}
]
}