GET /api/tool/?format=api&offset=140&ordering=-source_repository
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 207,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=-source_repository",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=-source_repository",
    "results": [
        {
            "id": 42,
            "name": "ISfinder",
            "description": "It is a dedicated insertion sequence (IS) database which assigns names to individual ISs to maintain a coherent nomenclature, an IS repositaory including >3000 individual ISs from both bacteria and archaea and provides a basis for IS classification. Each IS is indexed in ISfinder with various associated pieces of information and classified into a group or family to provide some insight into its phylogeny.",
            "homepage": "http://www-is.biotoul.fr",
            "biotoolsID": "isfinder",
            "biotoolsCURIE": "biotools:isfinder",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3068",
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0798",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Patricia Siguier",
                    "email": "Patricia.Siguier@ibcg.biotoul.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www-is.biotoul.fr/general_information.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-01-24T09:59:36.949842Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 172,
            "name": "Mix",
            "description": "Tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length.",
            "homepage": "https://github.com/cbib/MIX",
            "biotoolsID": "mix",
            "biotoolsCURIE": "biotools:mix",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [
                "10.1186/1471-2105-14-S15-S16"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Florence Maurier",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Alexis Groppi",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "CBiB - Universite Victor Segalen Bordeaux, 146, rue Leo Saignat, 33076 Bordeaux, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CBiB - Universite Victor Segalen Bordeaux, 146, rue Leo Saignat, 33076 Bordeaux, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "NKI-AVL, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NKI-AVL, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CNRS / LaBRI, Universite Bordeaux 1, 351 cours de la Liberation, 33405 Talence Cedex, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "Alexis Groppi",
                    "email": "alexis.groppi@u-bordeaux.fr",
                    "url": "http://www.cbib.u-bordeaux2.fr/fr/content/services",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Alexis Groppi",
                    "email": "alexis.groppi@u-bordeaux.fr",
                    "url": "http://www.cbib.u-bordeaux2.fr/fr/content/services",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Heissam Soueidan",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Macha Nikolski",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "CNRS / LaBRI, Universite Bordeaux 1, 351 cours de la Liberation, 33405 Talence Cedex, France",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "u-bordeaux.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "https://github.com/cbib/MIX",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:18:36.339969Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": null
        },
        {
            "id": 131,
            "name": "jvenn",
            "description": "Plug-in for the jQuery Javascript library. It is an integrative tool for comparing lists with Venn Diagrams.",
            "homepage": "http://bioinfo.genotoul.fr/jvenn/",
            "biotoolsID": "jvenn",
            "biotoolsCURIE": "biotools:jvenn",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_2269"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "support.genopole@toulouse.inra.fr",
                    "url": "http://bioinfo.genotoul.fr/jvenn/index.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://jvenn.toulouse.inra.fr/app/index.html",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:53:20.499445Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 121,
            "name": "LoRDEC",
            "description": "Program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads.",
            "homepage": "http://www.atgc-montpellier.fr/lordec/",
            "biotoolsID": "lordec",
            "biotoolsCURIE": "biotools:lordec",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Leena Salmela",
                    "email": "leena.salmela@cs.Helsinki.FI",
                    "url": "https://www.cs.helsinki.fi/u/lmsalmel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Eric Rivals",
                    "email": "rivals@lirmm.fr",
                    "url": "http://www.lirmm.fr/~rivals/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.atgc-montpellier.fr/lordec/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:01:03.046535Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 81,
            "name": "MatrixDB",
            "description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
            "homepage": "http://matrixdb.univ-lyon1.fr/",
            "biotoolsID": "matrixdb",
            "biotoolsCURIE": "biotools:matrixdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "MatrixDB Support",
                    "email": "sylvie.ricard-blum@univ-lyon1.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9263-1851",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
                }
            ],
            "tool_licence": null,
            "documentation": "http://matrixdb.univ-lyon1.fr/",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:29:32.794189Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 208,
            "name": "MindTheGap",
            "description": "Performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.",
            "homepage": "https://gatb.inria.fr/software/mind-the-gap/",
            "biotoolsID": "mindthegap",
            "biotoolsCURIE": "biotools:mindthegap",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0199"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btu545"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Claire Lemaitre",
                    "email": "claire.lemaitre@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://gatb.inria.fr/software/mind-the-gap/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:58:48.627968Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 179,
            "name": "MACSIMS",
            "description": "Multiple alignment-based information management system that combines the advantages of both knowledge-based and ab initio sequence analysis methods.",
            "homepage": "http://www.lbgi.fr/~julie/MACSIMS/",
            "biotoolsID": "macsims",
            "biotoolsCURIE": "biotools:macsims",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0092"
            ],
            "primary_publication": [
                "10.1186/1471-2105-7-318"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IFB ELIXIR-FR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Julie Thompson",
                    "email": "julie@igbmc.u-strasbg.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.lbgi.fr/~julie/MACSIMS/Documentation/",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:53:38.069848Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 93,
            "name": "MicroScope platform",
            "description": "MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts.",
            "homepage": "https://mage.genoscope.cns.fr/microscope/",
            "biotoolsID": "MicroScope_platform",
            "biotoolsCURIE": "biotools:MicroScope_platform",
            "tool_type": [
                "Bioinformatics portal",
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "fr"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_2259",
                "http://edamontology.org/topic_0219"
            ],
            "primary_publication": [
                "10.1093/nar/gks1194",
                "10.1093/nar/gkz926",
                "10.1093/database/bap021",
                "10.1093/nar/gkj406",
                "10.1093/nar/gkw1101",
                "10.1093/bib/bbx113"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Developer",
                        "Provider",
                        "Primary contact"
                    ],
                    "name": "LABGeM - CEA/Genosocope - UMR8030",
                    "email": "labgem@genoscope.cns.fr",
                    "url": "https://labgem.genoscope.cns.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://microscope.readthedocs.io/en/stable/",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:28Z",
            "teams": [
                "MicroScope"
            ],
            "source_repository": null
        },
        {
            "id": 132,
            "name": "Minia",
            "description": "Short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.",
            "homepage": "http://minia.genouest.org/",
            "biotoolsID": "minia",
            "biotoolsCURIE": "biotools:minia",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [
                "10.1186/1748-7188-9-2"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Guillaume Rizk",
                    "email": "guillaume.rizk@irisa.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Rayan Chikhi",
                    "email": "chikhi@psu.edu",
                    "url": "http://rayan.chikhi.name",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://minia.genouest.org/files/minia.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:36:01.515486Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 130,
            "name": "MEMHDX",
            "description": "This tool allows users to perform an automated workflow to analyze, validate and visualize large HDX-MS datasets. The input file is the output of DynamX software from Waters. Output files provide a plot of the data, the fitted model for each peptide, a plot of the calculated p -values, and a global visualization of the experiment. User could also obtain an overview of all peptides on the 3D structure.",
            "homepage": "http://memhdx.c3bi.pasteur.fr/",
            "biotoolsID": "memhdx",
            "biotoolsCURIE": "biotools:memhdx",
            "tool_type": [
                "Web application"
            ],
            "collection": [
                "Proteomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3520"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btw420"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Véronique Hourdel",
                    "email": "vhourdel@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/veronique-hourdel/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Structural Mass Spectrometry and Proteomics",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/structural-mass-spectrometry-and-proteomics/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Marie-Agnès Dillies",
                    "email": "marie-agnes.dillies@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/marie-agnes-dillies/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Sébastien Brier",
                    "email": "sbrier@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/sebastien-brier/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Stevenn Volant",
                    "email": "svolant@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/stevenn-volant/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "https://research.pasteur.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "C3BI",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/center/c3bi/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Bioinformatics and Biostatistics Hub",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.youtube.com/watch?v=WeCt1sVyHio&feature=youtu.be",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": 833,
            "citations": null,
            "annual_visits": 1524,
            "last_update": "2024-11-25T14:14:10.281449Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": null
        },
        {
            "id": 88,
            "name": "MetExplore",
            "description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
            "homepage": "http://www.metexplore.fr/",
            "biotoolsID": "metexplore",
            "biotoolsCURIE": "biotools:metexplore",
            "tool_type": [
                "Web service",
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "EBI Training Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [
                "10.1093/nar/gky301",
                "10.1093/nar/gkq312"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "ludovic.cottret@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "MetaboHub",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "metexplore@oulouse.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Fabien JOURDAN",
                    "email": "fabien.jourdan@inra.fr",
                    "url": "https://sites.google.com/site/fabienjourdan/",
                    "orcidid": "https://orcid.org/0000-0001-9401-2894",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:46:23.656822Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 122,
            "name": "microSysMics",
            "description": "This workflow provides an automated microbiome data analysis, starting with sequenced taxonomic markers (such as 16SrRNA) and using the standard QIIME2 toolbox to produce an abundance table and preliminary diversity, phylogeny and taxonomy analysis.",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics",
            "biotoolsID": "microSysMics",
            "biotoolsCURIE": "biotools:microSysMics",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3697"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "http://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LS2N",
                    "email": null,
                    "url": "http://www.ls2n.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Samuel Chaffron",
                    "email": "samuel.chaffron@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5903-617X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "TENS",
                    "email": null,
                    "url": "https://www.inserm-tens.com/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Erwan Delage",
                    "email": "erwan.delage@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Michel Neunlist",
                    "email": "michel.neunlist@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1892-5071",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Contributor"
                    ],
                    "name": "Damien Vintache",
                    "email": "Damien.Vintache@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "http://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                }
            ],
            "tool_licence": "Other",
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2023-09-19T15:06:56.878425Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 3,
            "name": "Rice Genome Hub",
            "description": "An open source database(s) for genetics, genomics and functional research in rice species",
            "homepage": "https://rice-genome-hub.southgreen.fr/",
            "biotoolsID": "Rice_Genome_Hub",
            "biotoolsCURIE": "biotools:Rice_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3321",
                "http://edamontology.org/topic_3366",
                "http://edamontology.org/topic_0780"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "manuel.ruiz@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8153-276X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "christine.tranchant@ird.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6934-1215",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "CRP Rice",
                    "email": null,
                    "url": "http://ricecrp.org/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Funding agency",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "gaetan.droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 175,
            "name": "Logol",
            "description": "Pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic).",
            "homepage": "http://logol.genouest.org",
            "biotoolsID": "logol",
            "biotoolsCURIE": "biotools:logol",
            "tool_type": [
                "Command-line tool",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0160"
            ],
            "primary_publication": [
                "10.1007/978-3-319-09192-1_4"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=LOGOL",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:34Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 31,
            "name": "Orphadata",
            "description": "A comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format.",
            "homepage": "http://www.orphadata.org/",
            "biotoolsID": "orphadata",
            "biotoolsCURIE": "biotools:orphadata",
            "tool_type": [
                "Database portal",
                "Web API",
                "SPARQL endpoint"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_0089",
                "http://edamontology.org/topic_3068"
            ],
            "primary_publication": [
                "10.1002/humu.22078"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Céline Rousselot",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Inserm US14",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Samuel Demarest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marc Hanauer",
                    "email": "marc.hanauer@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Orphanet Inserm",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": "http://www.orphadata.org/cgi-bin/index.php/",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T13:46:06.717312Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 75,
            "name": "NAPP",
            "description": "Nucleic Acid Phylogenetic Profile Database: classifies coding and non-coding sequences in a genome according to their pattern of conservation across other genomes.",
            "homepage": "http://napp.u-psud.fr/",
            "biotoolsID": "napp",
            "biotoolsCURIE": "biotools:napp",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0082",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0077",
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "NAPP Support",
                    "email": "napp.biologie@u-psud.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rna.igmors.u-psud.fr/NAPP/Help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:05:27.630660Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 178,
            "name": "NGS-QC Generator",
            "description": "Comparative analysis between ChIP-seq and other enrichment-related NGS datasets requires prior characterization of their degree of technical similarity. The Galaxy tool NGS-QC Generator is a computational-based approach that infers quality indicators from the distribution of sequenced reads associated to a particular NGS profile. Such information is then used for comparative purposes and for defining strategies to improve the quality of sample-derived datasets.",
            "homepage": "http://www.ngs-qc.org/",
            "biotoolsID": "ngs-qc_generator",
            "biotoolsCURIE": "biotools:ngs-qc_generator",
            "tool_type": [
                "Web application"
            ],
            "collection": [
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3572",
                "http://edamontology.org/topic_3169"
            ],
            "primary_publication": [
                "10.1007/978-1-4939-3578-9_13"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "contact@ngs-qc.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "http://www.ngs-qc.org/tutorial.php",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T14:05:15.865852Z",
            "teams": [
                "BiGEst"
            ],
            "source_repository": null
        },
        {
            "id": 140,
            "name": "NucleusJ",
            "description": "Simple and user-friendly ImageJ plugin dedicated to the characterization of nuclear morphology and chromatin organization in 3D.",
            "homepage": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start",
            "biotoolsID": "nucleusj",
            "biotoolsCURIE": "biotools:nucleusj",
            "tool_type": [
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0097",
                "http://edamontology.org/topic_2229",
                "http://edamontology.org/topic_3382"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Axel Poulet",
                    "email": "pouletaxel@gmail.com",
                    "url": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#authors",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:nuclear_analysis_plugin:start#usage",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:54:14.614349Z",
            "teams": [
                "AuBi"
            ],
            "source_repository": null
        },
        {
            "id": 38,
            "name": "MoonDB",
            "description": "MoonDB is a database containing predicted Extreme Multifunctional (EMF) proteins (i.e. proteins with several unrelated functions), as well as a set of manually curated moonlighting proteins. Moonlighting proteins are a subclass of multifunctional proteins.",
            "homepage": "http://moondb.hb.univ-amu.fr/",
            "biotoolsID": "MoonDB",
            "biotoolsCURIE": "biotools:MoonDB",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-11-06T11:40:39Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 73,
            "name": "mosaic",
            "description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
            "homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
            "biotoolsID": "mosaic",
            "biotoolsCURIE": "biotools:mosaic",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_3056",
                "http://edamontology.org/topic_3299"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Leithen K. M’Gonigle",
                    "email": "mgonigle@zoology.ubc.ca",
                    "url": "http://www.zoology.ubc.ca/~fitzjohn",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:20:53.826983Z",
            "teams": [],
            "source_repository": null
        }
    ]
}