HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 238,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=160&ordering=-name",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=-name",
"results": [
{
"id": 272,
"name": "IMGT-ONTOLOGY",
"description": "IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, \"IDENTIFICATION\", \"CLASSIFICATION\", \"DESCRIPTION\", \"NUMEROTATION\", \"LOCALIZATION\", \"ORIENTATION\" and \"OBTENTION\". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized.",
"homepage": "http://www.imgt.org/IMGTindex/ontology.php",
"biotoolsID": "IMGT-ONTOLOGY",
"biotoolsCURIE": "biotools:IMGT-ONTOLOGY",
"tool_type": [
"Ontology"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/IMGTindex/ontology.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:20.932052Z",
"teams": [
"IMGT"
],
"source_repository": "http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY"
},
{
"id": 277,
"name": "IMGT mAb-DB",
"description": "IMGT/mAb-DB is the IMGT® database for monoclonal antibodies (mAb) or immunoglobulins (IG), fusion proteins for immune applications (FPIA) and composite proteins for clinical applications (CPCA).\nIMGT/mAb-DB provides links to IMGT/2Dstructure-DB and IMGT/3Dstructure-DB.",
"homepage": "http://www.imgt.org/mAb-DB/",
"biotoolsID": "IMGT_mAb-DB",
"biotoolsCURIE": "biotools:IMGT_mAb-DB",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3400",
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0804"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.Lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.Kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/mAb-DB/doc",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:20.810745Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 271,
"name": "IMGT HighV-QUEST",
"description": "IMGT/HighV-QUEST is the IMGT® portal for NGS high-throughput nucleotide sequence analysis of immunoglobulins (IG) and T cell receptors (TR) variable domains, integrates IMGT/JunctionAnalysis and IMGT/Automat.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/HighV-QUEST/home.action",
"biotoolsID": "IMGT_HighV-QUEST",
"biotoolsCURIE": "biotools:IMGT_HighV-QUEST",
"tool_type": [
"Bioinformatics portal",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/HighV-QUEST/doc.action",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:34:04.967828Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 273,
"name": "IMGT GENE-DB",
"description": "IMGT/GENE-DB is the IMGT® database for immunoglobulin (IG) and T cell receptor (TR) genes and alleles (international nomenclature).\nAnnotation is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/genedb/",
"biotoolsID": "IMGT_GENE-DB",
"biotoolsCURIE": "biotools:IMGT_GENE-DB",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0804"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sophia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/genedb/doc",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:46.657117Z",
"teams": [],
"source_repository": null
},
{
"id": 275,
"name": "IMGT 3Dstructure-DB",
"description": "IMGT/3Dstructure-DB is the IMGT® database for 3D structures of immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) proteins, related proteins of the immune system (RPI) and fusion proteins for immune applications (FPIA).\nAnnotation is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/3Dstructure-DB/",
"biotoolsID": "imgt_3dstructure",
"biotoolsCURIE": "biotools:imgt_3dstructure",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0804"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/3Dstructure-DB/doc/IMGT3DstructureDBHelp.shtml",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:15.256998Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 60,
"name": "ICS Mouse Zoo",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 13,
"name": "Human Splicing Finder",
"description": "The Human Splicing Finder (HSF) system combines 12 different algorithms to identify and predict mutations’ effect on splicing motifs including the acceptor and donor splice sites, the branch point and auxiliary sequences known to either enhance or repress splicing: Exonic Splicing Enhancers (ESE) and Exonic Splicing Silencers (ESS).",
"homepage": "http://www.umd.be/HSF3/",
"biotoolsID": "human_splicing_finder",
"biotoolsCURIE": "biotools:human_splicing_finder",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Developed_RD-Connect",
"RD-Connect",
"Rare Disease",
"ELIXIR-FR"
],
"scientific_topics": [
"http://edamontology.org/topic_3571",
"http://edamontology.org/topic_3320",
"http://edamontology.org/topic_3063",
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_3512",
"http://edamontology.org/topic_0199"
],
"primary_publication": [
"10.1093/nar/gkp215"
],
"operating_system": [
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact Form",
"email": null,
"url": "http://www.umd.be/HSF3/contactus.html",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Christophe Béroud",
"email": "christophe.beroud@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "David Salgado",
"email": "david.salgado@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.umd.be/HSF3/technicaltips.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T13:49:29.814329Z",
"teams": [],
"source_repository": null
},
{
"id": 18,
"name": "HuGChip",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 21,
"name": "HOGENOM",
"description": "It allows selection of sets of homologous genes among species, and visualisation of multiple alignments and phylogenetic trees. It is useful for comparative sequence analysis, phylogeny, molecular evolution studies and to get a view of what is known about a peculiar gene family.",
"homepage": "http://pbil.univ-lyon1.fr/databases/hogenom3.html",
"biotoolsID": "hogenom",
"biotoolsCURIE": "biotools:hogenom",
"tool_type": [
"Database portal",
"Web service"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0194",
"http://edamontology.org/topic_0623"
],
"primary_publication": [
"10.1186/1471-2105-10-S6-S3"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": "http://drcat.sourceforge.net/",
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Documentor"
],
"name": "BioCatalogue",
"email": null,
"url": "https://www.biocatalogue.org",
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "simon.penel@univ-lyon1.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://prodom.prabi.fr/prodom/current/html/home.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://doua.prabi.fr/databases/hogenom/home.php?contents=methods",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:20:45.218653Z",
"teams": [],
"source_repository": null
},
{
"id": 155,
"name": "HHalign-Kbest",
"description": "Useful to automatically obtain optimized alignments and models in case of low sequence identity (<35%) between a query and a template protein. It can generate k suboptimal (e.g. top-k scoring) alignments rather than only the optimal one which may contain small to large errors.",
"homepage": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HHalign-Kbest/",
"biotoolsID": "hhalign-kbest",
"biotoolsCURIE": "biotools:hhalign-kbest",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0081",
"http://edamontology.org/topic_2814",
"http://edamontology.org/topic_0736"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Raphael Guerois",
"email": null,
"url": "https://scholar.google.com/citations?user=M7Ln2zQAAAAJ&hl=es",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HHalign-Kbest/#faq",
"maturity": null,
"cost": null,
"unique_visits": 70,
"citations": null,
"annual_visits": 260,
"last_update": "2024-11-25T14:00:57.608636Z",
"teams": [
"RPBS"
],
"source_repository": null
},
{
"id": 177,
"name": "HexServer",
"description": "A FFT-based protein docking server powered by graphics processors, HexServer rapidly produces a ranked list of docking predictions for input PDB protein structures.",
"homepage": "http://hexserver.loria.fr/",
"biotoolsID": "hexserver",
"biotoolsCURIE": "biotools:hexserver",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0166",
"http://edamontology.org/topic_2275",
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_2814",
"http://edamontology.org/topic_0078"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Dave Ritchie",
"email": "dave.ritchie@loria.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://hexserver.loria.fr/help.php",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 5000,
"last_update": "2024-11-25T15:08:17.085207Z",
"teams": [
"MBI-DS4H"
],
"source_repository": null
},
{
"id": 162,
"name": "HCA (hydrophobic cluster analysis)",
"description": "The HCA method is based on the use of a bidimensional plot, called the HCA plot. The bidimensional plot is associated with an alpha helicoidal pitch (3.6 residue/turn, connectivity distance of 4) which has been shown to offer the best correspondence between clusters and regular secondary structures. Examination of the HCA plot of a protein sequence allow to easily identify globular regions from non globular ones and, in globular regions, to identify secondary structures.",
"homepage": "http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py?form=HCA#forms::HCA",
"biotoolsID": "hca",
"biotoolsCURIE": "biotools:hca",
"tool_type": [
"Web application"
],
"collection": [
"Proteomics"
],
"scientific_topics": [
"http://edamontology.org/topic_3542",
"http://edamontology.org/topic_0121"
],
"primary_publication": [
"10.1007/s000180050082"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Isabelle Callebaut",
"email": "Isabelle.Callebaut@lmcp.jussieu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://bioserv.rpbs.univ-paris-diderot.fr/services/HCA/",
"maturity": null,
"cost": null,
"unique_visits": 3200,
"citations": null,
"annual_visits": 10000,
"last_update": "2024-11-24T15:47:21.770746Z",
"teams": [
"RPBS"
],
"source_repository": null
},
{
"id": 46,
"name": "HBVdb",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 62,
"name": "GxDB",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 37,
"name": "GreenPhyl",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 185,
"name": "GPCRautomodel",
"description": "Allows the user to upload a GPCR sequence, choose a ligand in a library and obtain the 3D structure of the free receptor and ligand-receptor complex.",
"homepage": "http://genome.jouy.inra.fr/GPCRautomodel",
"biotoolsID": "gpcrautomodel",
"biotoolsCURIE": "biotools:gpcrautomodel",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_0128"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Jean-François Gibrat",
"email": "jean-francois.gibrat@jouy.inra.fr",
"url": "http://genome.jouy.inra.fr/GPCRautomdl/cgi-bin/welcome.pl",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T16:14:23.225464Z",
"teams": [
"MIGALE"
],
"source_repository": null
},
{
"id": 70,
"name": "GnplS",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [
"URGI"
],
"source_repository": null
},
{
"id": 96,
"name": "GINsim",
"description": "Computer tool for the modeling and simulation of genetic regulatory networks.",
"homepage": "http://ginsim.org/",
"biotoolsID": "ginsim",
"biotoolsCURIE": "biotools:ginsim",
"tool_type": [
"Desktop application"
],
"collection": [
"elixir-fr-sdp-2019",
"FR",
"EBI Training Tools",
"PerMedCoE"
],
"scientific_topics": [
"http://edamontology.org/topic_0204",
"http://edamontology.org/topic_2259",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Support",
"Developer"
],
"name": null,
"email": null,
"url": "http://ginsim.org/contact",
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://ginsim.org/documentation",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:09:51.625867Z",
"teams": [],
"source_repository": "http://ginsim.org/models_repository"
},
{
"id": 125,
"name": "Gigwa",
"description": "The Gigwa application, which stands for “Genotype Investigator for Genome-Wide Analyses”, provides an easy and intuitive way to explore large amounts of genotyping data by filtering it not only on the basis of variant features, including functional annotations, but also matching genotype patterns. It is a fairly lightweight, web-based, platform-independent solution that may be deployed on a workstation or as a data portal. It allows to feed a MongoDB database with VCF, PLINK or HapMap files containing up to tens of billions of genotypes, and provides a user-friendly interface to filter data in real time. Gigwa provides the means to export filtered data into several popular formats and features connectivity not only with online genomic tools, but also with standalone software such as FlapJack or IGV. Additionnally, Gigwa-hosted datasets are interoperable via two standard REST APIs: GA4GH and BrAPI.",
"homepage": "http://www.southgreen.fr/content/gigwa",
"biotoolsID": "Gigwa",
"biotoolsCURIE": "biotools:Gigwa",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_2885",
"http://edamontology.org/topic_0625",
"http://edamontology.org/topic_3071"
],
"primary_publication": [
"10.1093/GIGASCIENCE/GIZ051",
"10.1186/s13742-016-0131-8"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Guilhem Sempéré",
"email": "guilhem.sempere@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-7429-2091",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "gigwa@cirad.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "AGPL-3.0",
"documentation": "http://gigwa.southgreen.fr/gigwa/docs/gigwa_docs.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2020-09-14T08:25:17Z",
"teams": [
"South Green"
],
"source_repository": "https://github.com/SouthGreenPlatform/Gigwa2"
},
{
"id": 99,
"name": "Genomicus-protists",
"description": "Genomicus-protists is a genome browser that enables users to navigate in protists genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.",
"homepage": "http://www.genomicus.biologie.ens.fr/genomicus-protists/",
"biotoolsID": "Genomicus-protists",
"biotoolsCURIE": "biotools:Genomicus-protists",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019",
"GENOMICUS"
],
"scientific_topics": [
"http://edamontology.org/topic_3943",
"http://edamontology.org/topic_3299",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0622",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_0194",
"http://edamontology.org/topic_0623"
],
"primary_publication": [
"10.1093/nar/gks1156"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Support"
],
"name": null,
"email": "genomicus-web@ens.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Alexandra Louis",
"email": "alouis@biologie.ens.fr",
"url": "http://www.ibens.ens.fr/spip.php?article182",
"orcidid": "http://orcid.org/0000-0001-7032-5650",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Hugues Roest Crollius",
"email": "hrc@ens.fr",
"url": "http://www.ibens.ens.fr/?rubrique43",
"orcidid": "http://orcid.org/0000-0002-8209-173X",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-06-16T10:55:27Z",
"teams": [
"PB-IBENS"
],
"source_repository": null
}
]
}