HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 229,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=documentation",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=100&ordering=documentation",
"results": [
{
"id": 168,
"name": "FastME",
"description": "Distance algorithms to infer phylogenies. It's based on balanced minimum evolution, which is the very principle of NJ. It includes Nearest Neighbor Interchange (NNI) and also Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities: distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations.",
"homepage": "http://www.atgc-montpellier.fr/fastme/",
"biotoolsID": "fastme",
"biotoolsCURIE": "biotools:fastme",
"tool_type": [
"Command-line tool",
"Web application"
],
"collection": [
"galaxyPasteur",
"FastME"
],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0091"
],
"primary_publication": [
"10.1093/molbev/msv150"
],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact",
"Contributor"
],
"name": "Vincent Lefort",
"email": "vincent.lefort@lirmm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://www.atgc-montpellier.fr/fastme/usersguide.php",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 300,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-24T20:59:19.988087Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 121,
"name": "LoRDEC",
"description": "Program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads.",
"homepage": "http://www.atgc-montpellier.fr/lordec/",
"biotoolsID": "lordec",
"biotoolsCURIE": "biotools:lordec",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leena Salmela",
"email": "leena.salmela@cs.Helsinki.FI",
"url": "https://www.cs.helsinki.fi/u/lmsalmel/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Eric Rivals",
"email": "rivals@lirmm.fr",
"url": "http://www.lirmm.fr/~rivals/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/lordec/",
"maturity": "Mature",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:01:03.046535Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 52,
"name": "Gametogenesis and reproductive tissue expression",
"description": "High-throughput expression data relevant for germline development and fertility across species.",
"homepage": "http://www.germonline.org/",
"biotoolsID": "germonline",
"biotoolsCURIE": "biotools:germonline",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0623"
],
"primary_publication": [
"10.1093/database/baq030"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "michael.primig@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.germonline.org/gol_4_userguide.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:35:55.972418Z",
"teams": [
"GenOuest"
],
"source_repository": "http://www.germonline.org/gol_4_userguide.pdf"
},
{
"id": 275,
"name": "IMGT 3Dstructure-DB",
"description": "IMGT/3Dstructure-DB is the IMGT® database for 3D structures of immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) proteins, related proteins of the immune system (RPI) and fusion proteins for immune applications (FPIA).\nAnnotation is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/3Dstructure-DB/",
"biotoolsID": "imgt_3dstructure",
"biotoolsCURIE": "biotools:imgt_3dstructure",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0804"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/3Dstructure-DB/doc/IMGT3DstructureDBHelp.shtml",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:15.256998Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 84,
"name": "IMGT, the international ImMunoGeneTics information system",
"description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
"homepage": "http://www.imgt.org/",
"biotoolsID": "imgt",
"biotoolsCURIE": "biotools:imgt",
"tool_type": [
"Database portal",
"Bioinformatics portal",
"Web application",
"Ontology"
],
"collection": [
"elixir-fr-sdp-2019",
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_3930"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.imgt.org/IMGTinformation/Contact.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/FAQ/",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:34:08.902650Z",
"teams": [],
"source_repository": null
},
{
"id": 273,
"name": "IMGT GENE-DB",
"description": "IMGT/GENE-DB is the IMGT® database for immunoglobulin (IG) and T cell receptor (TR) genes and alleles (international nomenclature).\nAnnotation is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/genedb/",
"biotoolsID": "IMGT_GENE-DB",
"biotoolsCURIE": "biotools:IMGT_GENE-DB",
"tool_type": [
"Web application",
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0804"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sophia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/genedb/doc",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:46.657117Z",
"teams": [],
"source_repository": null
},
{
"id": 271,
"name": "IMGT HighV-QUEST",
"description": "IMGT/HighV-QUEST is the IMGT® portal for NGS high-throughput nucleotide sequence analysis of immunoglobulins (IG) and T cell receptors (TR) variable domains, integrates IMGT/JunctionAnalysis and IMGT/Automat.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/HighV-QUEST/home.action",
"biotoolsID": "IMGT_HighV-QUEST",
"biotoolsCURIE": "biotools:IMGT_HighV-QUEST",
"tool_type": [
"Web application",
"Bioinformatics portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/HighV-QUEST/doc.action",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:34:04.967828Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 272,
"name": "IMGT-ONTOLOGY",
"description": "IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, \"IDENTIFICATION\", \"CLASSIFICATION\", \"DESCRIPTION\", \"NUMEROTATION\", \"LOCALIZATION\", \"ORIENTATION\" and \"OBTENTION\". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized.",
"homepage": "http://www.imgt.org/IMGTindex/ontology.php",
"biotoolsID": "IMGT-ONTOLOGY",
"biotoolsCURIE": "biotools:IMGT-ONTOLOGY",
"tool_type": [
"Ontology"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/IMGTindex/ontology.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:20.932052Z",
"teams": [
"IMGT"
],
"source_repository": "http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY"
},
{
"id": 270,
"name": "IMGT V-QUEST",
"description": "IMGT/V-QUEST is the IMGT® tool for nucleotide sequence alignment and analysis of immunoglobulin (IG) or antibody and T cell receptor (TR) variable domains, integrates IMGT/JunctionAnalysis, IMGT/Automat and IMGT/Collier-de-Perles.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/IMGT_vquest",
"biotoolsID": "imgt_v-quest",
"biotoolsCURIE": "biotools:imgt_v-quest",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "Marie-Paule.Lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/IMGT_vquest/user_guide",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:09.724903Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 277,
"name": "IMGT mAb-DB",
"description": "IMGT/mAb-DB is the IMGT® database for monoclonal antibodies (mAb) or immunoglobulins (IG), fusion proteins for immune applications (FPIA) and composite proteins for clinical applications (CPCA).\nIMGT/mAb-DB provides links to IMGT/2Dstructure-DB and IMGT/3Dstructure-DB.",
"homepage": "http://www.imgt.org/mAb-DB/",
"biotoolsID": "IMGT_mAb-DB",
"biotoolsCURIE": "biotools:IMGT_mAb-DB",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0804",
"http://edamontology.org/topic_3400"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.Lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.Kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/mAb-DB/doc",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:20.810745Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 179,
"name": "MACSIMS",
"description": "Multiple alignment-based information management system that combines the advantages of both knowledge-based and ab initio sequence analysis methods.",
"homepage": "http://www.lbgi.fr/~julie/MACSIMS/",
"biotoolsID": "macsims",
"biotoolsCURIE": "biotools:macsims",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0092"
],
"primary_publication": [
"10.1186/1471-2105-7-318"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "IFB ELIXIR-FR",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Julie Thompson",
"email": "julie@igbmc.u-strasbg.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.lbgi.fr/~julie/MACSIMS/Documentation/",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:53:38.069848Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 178,
"name": "NGS-QC Generator",
"description": "Comparative analysis between ChIP-seq and other enrichment-related NGS datasets requires prior characterization of their degree of technical similarity. The Galaxy tool NGS-QC Generator is a computational-based approach that infers quality indicators from the distribution of sequenced reads associated to a particular NGS profile. Such information is then used for comparative purposes and for defining strategies to improve the quality of sample-derived datasets.",
"homepage": "http://www.ngs-qc.org/",
"biotoolsID": "ngs-qc_generator",
"biotoolsCURIE": "biotools:ngs-qc_generator",
"tool_type": [
"Web application"
],
"collection": [
"Animal and Crop Genomics"
],
"scientific_topics": [
"http://edamontology.org/topic_3572",
"http://edamontology.org/topic_3169"
],
"primary_publication": [
"10.1007/978-1-4939-3578-9_13"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "contact@ngs-qc.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-2.0",
"documentation": "http://www.ngs-qc.org/tutorial.php",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T14:05:15.865852Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 31,
"name": "Orphadata",
"description": "A comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format.",
"homepage": "http://www.orphadata.org/",
"biotoolsID": "orphadata",
"biotoolsCURIE": "biotools:orphadata",
"tool_type": [
"Database portal",
"Web API",
"SPARQL endpoint"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0089",
"http://edamontology.org/topic_3068"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Marc Hanauer",
"email": "marc.hanauer@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Céline Rousselot",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Samuel Demarest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Orphanet Inserm",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "CC-BY-4.0",
"documentation": "http://www.orphadata.org/cgi-bin/index.php/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:46:06.717312Z",
"teams": [],
"source_repository": null
},
{
"id": 32,
"name": "Orphanet",
"description": "Information on rare diseases and orphan drugs.",
"homepage": "http://www.orpha.net/consor/cgi-bin/index.php",
"biotoolsID": "orphanet",
"biotoolsCURIE": "biotools:orphanet",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Rare Disease",
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_3325"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.orpha.net/consor/cgi-bin/Directory_Contact.php?lng=EN",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.orpha.net/consor/cgi-bin/Education_EducationTools.php?stapage=HM_BLOC_HEADER_HELP_SITEMAP&lng=EN",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:58:27.798370Z",
"teams": [],
"source_repository": null
},
{
"id": 83,
"name": "Phylogeny.fr",
"description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
"homepage": "http://www.phylogeny.fr/",
"biotoolsID": "phylogeny.fr",
"biotoolsCURIE": "biotools:phylogeny.fr",
"tool_type": [
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3293"
],
"primary_publication": [
"10.1093/nar/gkn180"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "IGS",
"email": null,
"url": "http://www.igs.cnrs-mrs.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Alexis Dereeper",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Valentin Guignon",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.phylogeny.fr/contacts.cgi",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.phylogeny.fr/documentation.cgi",
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:33:44.667229Z",
"teams": [
"ATGC",
"PACA-Bioinfo"
],
"source_repository": null
},
{
"id": 170,
"name": "RNAspace",
"description": "A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.",
"homepage": "http://www.rnaspace.org/",
"biotoolsID": "rnaspace",
"biotoolsCURIE": "biotools:rnaspace",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_0099",
"http://edamontology.org/topic_0219"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "Marie-Josee.Cros@inra.fr",
"url": "http://rnaspace.org/partners",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.rnaspace.org/help/#help1",
"maturity": null,
"cost": null,
"unique_visits": 14318,
"citations": null,
"annual_visits": 17558,
"last_update": "2018-12-10T12:58:50Z",
"teams": [],
"source_repository": null
},
{
"id": 165,
"name": "T-Coffee",
"description": "A multiple sequence alignment package that can be used for DNA, RNA and protein sequences. It can be used to align sequences or to combine the output of other alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment.",
"homepage": "http://www.tcoffee.org/Projects/tcoffee/",
"biotoolsID": "tcoffee",
"biotoolsCURIE": "biotools:tcoffee",
"tool_type": [
"Command-line tool"
],
"collection": [
"T-Coffee"
],
"scientific_topics": [
"http://edamontology.org/topic_0080"
],
"primary_publication": [
"10.1006/jmbi.2000.4042"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Cedric Notredame",
"email": "cedric.notredame@gmail.com",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "GPL-3.0",
"documentation": "http://www.tcoffee.org/Projects/tcoffee/documentation/README",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 11271,
"last_update": "2019-03-14T11:57:50Z",
"teams": [],
"source_repository": null
},
{
"id": 13,
"name": "Human Splicing Finder",
"description": "The Human Splicing Finder (HSF) system combines 12 different algorithms to identify and predict mutations’ effect on splicing motifs including the acceptor and donor splice sites, the branch point and auxiliary sequences known to either enhance or repress splicing: Exonic Splicing Enhancers (ESE) and Exonic Splicing Silencers (ESS).",
"homepage": "http://www.umd.be/HSF3/",
"biotoolsID": "human_splicing_finder",
"biotoolsCURIE": "biotools:human_splicing_finder",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Developed_RD-Connect",
"RD-Connect",
"Rare Disease",
"ELIXIR-FR"
],
"scientific_topics": [
"http://edamontology.org/topic_3571",
"http://edamontology.org/topic_3320",
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_3512",
"http://edamontology.org/topic_3063",
"http://edamontology.org/topic_0199"
],
"primary_publication": [
"10.1093/nar/gkp215"
],
"operating_system": [
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact Form",
"email": null,
"url": "http://www.umd.be/HSF3/contactus.html",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Christophe Béroud",
"email": "christophe.beroud@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "David Salgado",
"email": "david.salgado@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.umd.be/HSF3/technicaltips.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T13:49:29.814329Z",
"teams": [],
"source_repository": null
},
{
"id": 73,
"name": "mosaic",
"description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
"homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
"biotoolsID": "mosaic",
"biotoolsCURIE": "biotools:mosaic",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3056",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leithen K. M’Gonigle",
"email": "mgonigle@zoology.ubc.ca",
"url": "http://www.zoology.ubc.ca/~fitzjohn",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:20:53.826983Z",
"teams": [],
"source_repository": null
},
{
"id": 26,
"name": "ppRNome Browser",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
}
]
}