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],
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],
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},
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],
"name": "MÉNAGER Hervé",
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},
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"name": "Institut Pasteur",
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},
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],
"name": "DEBARBIEUX Laurent",
"email": null,
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"last_update": "2022-06-24T08:58:13.476714Z",
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],
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},
{
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"name": "Gigwa",
"description": "The Gigwa application, which stands for “Genotype Investigator for Genome-Wide Analyses”, provides an easy and intuitive way to explore large amounts of genotyping data by filtering it not only on the basis of variant features, including functional annotations, but also matching genotype patterns. It is a fairly lightweight, web-based, platform-independent solution that may be deployed on a workstation or as a data portal. It allows to feed a MongoDB database with VCF, PLINK or HapMap files containing up to tens of billions of genotypes, and provides a user-friendly interface to filter data in real time. Gigwa provides the means to export filtered data into several popular formats and features connectivity not only with online genomic tools, but also with standalone software such as FlapJack or IGV. Additionnally, Gigwa-hosted datasets are interoperable via two standard REST APIs: GA4GH and BrAPI.",
"homepage": "http://www.southgreen.fr/content/gigwa",
"biotoolsID": "Gigwa",
"biotoolsCURIE": "biotools:Gigwa",
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],
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"http://edamontology.org/topic_0625",
"http://edamontology.org/topic_3071"
],
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],
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],
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],
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}
],
"tool_licence": "AGPL-3.0",
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"maturity": "Mature",
"cost": "Free of charge",
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"citations": null,
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"last_update": "2020-09-14T08:25:17Z",
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],
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},
{
"id": 84,
"name": "IMGT, the international ImMunoGeneTics information system",
"description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
"homepage": "http://www.imgt.org/",
"biotoolsID": "imgt",
"biotoolsCURIE": "biotools:imgt",
"tool_type": [
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"Bioinformatics portal",
"Web application",
"Ontology"
],
"collection": [
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"DRCAT"
],
"scientific_topics": [
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"http://edamontology.org/topic_3948"
],
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],
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],
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"url": "http://www.imgt.org/IMGTinformation/Contact.php",
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},
{
"type_role": [
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],
"name": "DRCAT",
"email": null,
"url": null,
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"typeEntity": "Project",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/FAQ/",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
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"last_update": "2024-11-24T20:34:08.902650Z",
"teams": [],
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},
{
"id": 247,
"name": "metagWGS",
"description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
"homepage": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs",
"biotoolsID": "metagwgs",
"biotoolsCURIE": "biotools:metagwgs",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
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"http://edamontology.org/topic_3174"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
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],
"name": "Claire Hoede",
"email": "claire.hoede@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-5054-7731",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
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],
"name": "GenoToul bioinformatics facility",
"email": null,
"url": "http://bioinfo.genotoul.fr/",
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"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": null,
"documentation": "https://genotoul-bioinfo.pages-forge.inrae.fr/metagwgs/master/index.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2026-06-23T04:42:34.408916Z",
"teams": [
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],
"source_repository": "https://forge.inrae.fr/genotoul-bioinfo/metagwgs"
},
{
"id": 270,
"name": "IMGT V-QUEST",
"description": "IMGT/V-QUEST is the IMGT® tool for nucleotide sequence alignment and analysis of immunoglobulin (IG) or antibody and T cell receptor (TR) variable domains, integrates IMGT/JunctionAnalysis, IMGT/Automat and IMGT/Collier-de-Perles.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/IMGT_vquest",
"biotoolsID": "imgt_v-quest",
"biotoolsCURIE": "biotools:imgt_v-quest",
"tool_type": [
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],
"collection": [],
"scientific_topics": [
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"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_3168"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
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"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
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"typeEntity": "Person",
"note": null
},
{
"type_role": [
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],
"name": "Marie-Paule Lefranc",
"email": "Marie-Paule.Lefranc@igh.cnrs.fr",
"url": null,
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"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/IMGT_vquest/user_guide",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
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"last_update": "2024-11-25T13:59:09.724903Z",
"teams": [
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],
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},
{
"id": 246,
"name": "LSD",
"description": "Fast dating using least-squares criteria and algorithms",
"homepage": "http://www.atgc-montpellier.fr/LSD/",
"biotoolsID": "lsdate",
"biotoolsCURIE": "biotools:lsdate",
"tool_type": [
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],
"collection": [],
"scientific_topics": [
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],
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],
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"last_update": "2024-11-24T20:10:18.382414Z",
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},
{
"id": 267,
"name": "ReMap",
"description": "ReMap is a large scale integrative analysis of DNA-binding experiments for Homo sapiens, Mus musculus, Drosophila melanogaster and Arabidopsis thaliana transcriptional regulators. The catalogues are the results of the manual curation of ChIP-seq, ChIP-exo, DAP-seq from public sources (GEO, ENCODE, ENA). ReMap (https://remap.univ-amu.fr) aims to provide manually curated, high-quality catalogs of regulatory regions resulting from a large-scale integrative analysis of DNA-binding experiments in Human, Mouse, Fly and Arabidopsis thaliana for hundreds of transcription factors and regulators. In this 2022 update, we have uniformly processed >11 000 DNA-binding sequencing datasets from public sources across four species. The four regulatory catalogs are browsable through track hubs at UCSC, Ensembl and NCBI genome browsers.",
"homepage": "https://remap.univ-amu.fr/",
"biotoolsID": "inserm-remap",
"biotoolsCURIE": "biotools:inserm-remap",
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],
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"http://edamontology.org/topic_0085",
"http://edamontology.org/topic_0204",
"http://edamontology.org/topic_0160",
"http://edamontology.org/topic_0102",
"http://edamontology.org/topic_0749"
],
"primary_publication": [
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"10.1093/nar/gkab996",
"10.1093/nar/gkz945",
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],
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],
"tool_credit": [
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],
"name": "Inserm U1090 - TAGC",
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},
{
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],
"name": "Benoit Ballester",
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},
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"name": "Aix-Marseille University",
"email": null,
"url": null,
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"note": null
},
{
"type_role": [],
"name": "French Institute of Health and Medical Research",
"email": null,
"url": null,
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"note": null
}
],
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"last_update": "2024-11-24T14:21:26.315951Z",
"teams": [
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}
]
}