GET /api/tool/?format=api&offset=120&ordering=-id
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 207,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=-id",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=100&ordering=-id",
    "results": [
        {
            "id": 90,
            "name": "FAIDARE",
            "description": "FAIDARE: FAIR Data-finder for Agronomic Research. \nThe purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories.\n\nIt is based on the Breeding API (BrAPI) specifications and facilitates the access to genotype and phenotype datasets for crop and forest plants through an easy to use web interface. It also provides a standard interface that can be accessed programatically through web services.\n\nIt is an extension of the generic DataDiscovery portal, a web portal that allows finding any type of data across several databases through a lightweight keyword based search. FAIDARE offers more detailed search and data retrieval capabilities and it takes advantage of the growing adoption of the BrAPI.",
            "homepage": "https://urgi.versailles.inrae.fr/faidare/",
            "biotoolsID": "faidare",
            "biotoolsCURIE": "biotools:faidare",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_3810",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "URGI support",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/faidare/help",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-09-02T05:04:34.812991Z",
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/faidare"
        },
        {
            "id": 89,
            "name": "Workflow4Metabolomics",
            "description": "First fully open-source and collaborative online platform for computational metabolomics. It includes preprocessing, normalization, quality control, statistical analysis of LC/MS, FIA-MS, GC/MS and NMR data.",
            "homepage": "https://workflow4metabolomics.org/",
            "biotoolsID": "workflow4metabolomics",
            "biotoolsCURIE": "biotools:workflow4metabolomics",
            "tool_type": [
                "Bioinformatics portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_2259",
                "http://edamontology.org/topic_3172",
                "http://edamontology.org/topic_3307"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btu813"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [],
                    "name": "MetaboHUB - National infrastructure in metabolomics & fluxomics",
                    "email": null,
                    "url": "https://www.metabohub.fr/home.html",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Christophe Caron",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Christophe Duperier",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Franck Giacomoni",
                    "email": "franck.giacomoni@inrae.fr",
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": "https://orcid.org/0000-0001-6063-4214",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Gildas Le Corguillé",
                    "email": "lecorguille@sb-roscoff.fr",
                    "url": "http://abims.sb-roscoff.fr",
                    "orcidid": "https://orcid.org/0000-0003-1742-9711",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie Tremblay-Franco",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Jean-François Martin",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierrick Roger-Melee",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": "https://orcid.org/0000-0001-8177-4873",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Yann Guitton",
                    "email": null,
                    "url": "https://www.laberca.org/plateforme-analytique/presentation/",
                    "orcidid": "https://orcid.org/0000-0002-4479-0636",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Cécile Canlet",
                    "email": null,
                    "url": "https://www6.toulouse.inrae.fr/axiomm",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Misharl Monsoor",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Etienne A. Thévenot",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": "https://orcid.org/0000-0003-1019-4577",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Mélanie Pétéra",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "Workflow4Metabolomics Team",
                    "email": "contact@workflow4metabolomics.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Marion Landi",
                    "email": null,
                    "url": "https://www6.clermont.inrae.fr/unh/Plateaux-Techniques/Metabolisme-et-Spectrometrie-de-Masse",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "IFB - Institut Français de Bioinformatique",
                    "email": null,
                    "url": "https://www.france-bioinformatique.fr/en",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Pierre Pericard",
                    "email": null,
                    "url": "http://abims.sb-roscoff.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alexis Delabrière",
                    "email": null,
                    "url": "http://www-list.cea.fr/index.php/en/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Sophie Goulitquer",
                    "email": null,
                    "url": "http://www.sb-roscoff.fr/en/research-and-training-centre-marine-biology-and-oceanography/services/technological-core-facilities/mass-spectrometry-core-facility",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://workflow4metabolomics.org/howto",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-12-16T14:17:30Z",
            "teams": [
                "ABiMS"
            ],
            "source_repository": "https://github.com/workflow4metabolomics"
        },
        {
            "id": 88,
            "name": "MetExplore",
            "description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
            "homepage": "http://www.metexplore.fr/",
            "biotoolsID": "metexplore",
            "biotoolsCURIE": "biotools:metexplore",
            "tool_type": [
                "Web service",
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "EBI Training Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602"
            ],
            "primary_publication": [
                "10.1093/nar/gky301",
                "10.1093/nar/gkq312"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "ludovic.cottret@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "MetaboHub",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": null,
                    "email": "metexplore@oulouse.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Fabien JOURDAN",
                    "email": "fabien.jourdan@inra.fr",
                    "url": "https://sites.google.com/site/fabienjourdan/",
                    "orcidid": "https://orcid.org/0000-0001-9401-2894",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:46:23.656822Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 87,
            "name": "Genetic and Genomic Information System (GnpIS)",
            "description": "A multispecies integrative information system dedicated to plant and fungi pests.. It allows researchers to access genetic, phenotypic and genomic data. It is used by both large international projects and the French National Research Institute for Agriculture, Food and Environment",
            "homepage": "https://urgi.versailles.inrae.fr/gnpis",
            "biotoolsID": "gnpis",
            "biotoolsCURIE": "biotools:gnpis",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_0625"
            ],
            "primary_publication": [
                "10.1007/978-1-4939-6658-5_5",
                "10.3835/plantgenome2015.06.0038",
                "10.1093/database/bat058"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "urgi-contact@versailles.inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "CC-BY-4.0",
            "documentation": "https://urgi.versailles.inra.fr/gnpis/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:43:38.738005Z",
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": null
        },
        {
            "id": 86,
            "name": "BIII (BioImage Informatics Index, biii.eu)",
            "description": "BIII (BioImage Informatics Index, biii.eu) is a registry of software tools, image databases for benchmarking, and training materials for bioimage analysis. Software tools are organized as either a full protocol of analysis (workflow), a specific component to construct a workflow, or a software platform or library (collection). They are described using EDAM-bioimaging. All entries are exposed following FAIR principles and accessible for other usage with ODC-By v1.0 license.",
            "homepage": "https://biii.eu",
            "biotoolsID": "BISE",
            "biotoolsCURIE": "biotools:BISE",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "NEUBIAS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3298",
                "http://edamontology.org/topic_3382"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Matúš Kalaš",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-1509-4981",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Coordinator of the EDAM-bioimaging ontology development"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Kota Miura",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6926-191X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Main technical support and one of the founders of the project"
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Taggers",
                    "email": null,
                    "url": "http://biii.eu/show-taggers",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "People curating tools"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chong Zhang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Co-leader of the developement"
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NEUBIAS Network of Bioimage Analysts",
                    "email": null,
                    "url": "https://neubias.eu",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "COST action having supported the creation and curation of this database"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Leandro Scholz",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-2411-0429",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Worked on the curation instructions"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Perrine Paul-Gilloteaux",
                    "email": "perrine.paul-gilloteaux@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4822-165X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Leader of the project"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alban Gaignard",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3597-8557",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Developed the core ontology (data model) and enabled reuse of the content through W3C standards"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Florian Levet",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4009-6225",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Development of Python scripts"
                }
            ],
            "tool_licence": "Other",
            "documentation": "https://github.com/NeuBIAS/bise/wiki",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-03-26T15:45:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 85,
            "name": "ARIA",
            "description": "A software for automated NOE assignment and NMR structure calculation.",
            "homepage": "http://aria.pasteur.fr/",
            "biotoolsID": "aria",
            "biotoolsCURIE": "biotools:aria",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Institut Pasteur",
                "FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_1317",
                "http://edamontology.org/topic_0593",
                "http://edamontology.org/topic_0176",
                "http://edamontology.org/topic_3306",
                "http://edamontology.org/topic_3332",
                "http://edamontology.org/topic_2275",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btl589"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Michael Nilges",
                    "email": "michael.nilges@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Bardiaux",
                    "email": "benjamin.bardiaux@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "http://aria.pasteur.fr/contact-info",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "http://aria.pasteur.fr/documentation",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:37:34.670261Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 84,
            "name": "IMGT, the international ImMunoGeneTics information system",
            "description": "IMGT®, the international ImMunoGeneTics information system® is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.",
            "homepage": "http://www.imgt.org/",
            "biotoolsID": "imgt",
            "biotoolsCURIE": "biotools:imgt",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application",
                "Ontology"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3948",
                "http://edamontology.org/topic_3930"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.imgt.org/IMGTinformation/Contact.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/FAQ/",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:34:08.902650Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 83,
            "name": "Phylogeny.fr",
            "description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
            "homepage": "http://www.phylogeny.fr/",
            "biotoolsID": "phylogeny.fr",
            "biotoolsCURIE": "biotools:phylogeny.fr",
            "tool_type": [
                "Web application",
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293"
            ],
            "primary_publication": [
                "10.1093/nar/gkn180"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IGS",
                    "email": null,
                    "url": "http://www.igs.cnrs-mrs.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Alexis Dereeper",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Valentin Guignon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://www.phylogeny.fr/contacts.cgi",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.phylogeny.fr/documentation.cgi",
            "maturity": "Legacy",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:33:44.667229Z",
            "teams": [
                "ATGC",
                "PACA-Bioinfo"
            ],
            "source_repository": null
        },
        {
            "id": 82,
            "name": "PhyML",
            "description": "Phylogenetic estimation software using Maximum Likelihood",
            "homepage": "https://www.atgc-montpellier.fr/phyml/",
            "biotoolsID": "phyml",
            "biotoolsCURIE": "biotools:phyml",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "PhyML",
                "galaxyPasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/sysbio/syq010"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Maintainer",
                        "Support",
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Stephane Guindon",
                    "email": "guindon@lirmm.fr",
                    "url": "http://stephaneguindon.github.io/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Maintainer",
                        "Support"
                    ],
                    "name": "Stephane Guindon",
                    "email": "guindon@lirmm.fr",
                    "url": "https://stephaneguindon.github.io/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "LIRMM",
                    "email": null,
                    "url": "https://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": "https://github.com/stephaneguindon/phyml/blob/master/doc/phyml-manual.pdf",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:34:19.190685Z",
            "teams": [
                "ATGC"
            ],
            "source_repository": null
        },
        {
            "id": 81,
            "name": "MatrixDB",
            "description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
            "homepage": "http://matrixdb.univ-lyon1.fr/",
            "biotoolsID": "matrixdb",
            "biotoolsCURIE": "biotools:matrixdb",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_0128",
                "http://edamontology.org/topic_0623",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "MatrixDB Support",
                    "email": "sylvie.ricard-blum@univ-lyon1.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9263-1851",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
                }
            ],
            "tool_licence": null,
            "documentation": "http://matrixdb.univ-lyon1.fr/",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:29:32.794189Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 79,
            "name": "CRISPRdb ",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 78,
            "name": "tandemRepeat",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 77,
            "name": "Podospora ",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 76,
            "name": "Bacterial Genotyping ",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 75,
            "name": "NAPP",
            "description": "Nucleic Acid Phylogenetic Profile Database: classifies coding and non-coding sequences in a genome according to their pattern of conservation across other genomes.",
            "homepage": "http://napp.u-psud.fr/",
            "biotoolsID": "napp",
            "biotoolsCURIE": "biotools:napp",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0082",
                "http://edamontology.org/topic_3511",
                "http://edamontology.org/topic_0077",
                "http://edamontology.org/topic_0097"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "NAPP Support",
                    "email": "napp.biologie@u-psud.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://rna.igmors.u-psud.fr/NAPP/Help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:05:27.630660Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 74,
            "name": "ORENZA",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [],
            "source_repository": null
        },
        {
            "id": 73,
            "name": "mosaic",
            "description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
            "homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
            "biotoolsID": "mosaic",
            "biotoolsCURIE": "biotools:mosaic",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_3056",
                "http://edamontology.org/topic_3299"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Leithen K. M’Gonigle",
                    "email": "mgonigle@zoology.ubc.ca",
                    "url": "http://www.zoology.ubc.ca/~fitzjohn",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T15:20:53.826983Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 72,
            "name": "Insyght",
            "description": "Browser that helps navigate among abundant homologies, syntenies and genes annotations.",
            "homepage": "http://genome.jouy.inra.fr/Insyght",
            "biotoolsID": "insyght",
            "biotoolsCURIE": "biotools:insyght",
            "tool_type": [
                "Database portal",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_3071"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "insyght@inra.fr",
                    "url": "http://genome.jouy.inra.fr/Insyght",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genome.jouy.inra.fr/Insyght_doc_online/",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:51:03.945288Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 70,
            "name": "GnplS",
            "description": "",
            "homepage": null,
            "biotoolsID": "",
            "biotoolsCURIE": "",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": null,
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": null
        },
        {
            "id": 69,
            "name": "WheatIS",
            "description": "This project aims at building an International Wheat Information System (WheatIS) to support the wheat research community. The main objective is to provide a single-access web based system to access to the available data resources and bioinformatics tools. The web portal indexes and makes findable any kind of data from wheat related species. \nThe WheatIS search is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/wheatis/",
            "biotoolsID": "WheatIS",
            "biotoolsCURIE": "biotools:WheatIS",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [
                "10.1186/s13059-018-1491-4"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Support",
                        "Primary contact"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inra.fr/wheatis/about",
            "maturity": "Mature",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-02-15T15:54:13Z",
            "teams": [
                "PlantBioinfoPF"
            ],
            "source_repository": null
        }
    ]
}