HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 233,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=140&ordering=-collection",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=100&ordering=-collection",
"results": [
{
"id": 262,
"name": "GeMo",
"description": "A web-based platform for the visualization and curation of genome ancestry mosaics.",
"homepage": "https://gemo.southgreen.fr/",
"biotoolsID": "gemo",
"biotoolsCURIE": "biotools:gemo",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_0625",
"http://edamontology.org/topic_3810",
"http://edamontology.org/topic_0780",
"http://edamontology.org/topic_3500"
],
"primary_publication": [],
"operating_system": [
"Mac",
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Mathieu Rouard",
"email": "m.rouard@cgiar.org",
"url": null,
"orcidid": "https://orcid.org/0000-0003-0284-1885",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Marilyne Summo",
"email": "marilyne.summo@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-9308-974X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Gaëtan Droc",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0003-1849-1269",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Guillaume Martin",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0002-1801-7500",
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://gemo.readthedocs.io",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T15:31:16.942311Z",
"teams": [
"South Green"
],
"source_repository": "https://github.com/SouthGreenPlatform/GeMo"
},
{
"id": 174,
"name": "Linda",
"description": "The web application Linda offers a complete tool for entering and managing metadata associated with a phenotyping experiment on plants. It thus makes it possible to intuitively describe experimental related information such as, for example, the experimental design, the growth protocols, the environmental variable measurements, etc. Linda is coupled with a database that stores this information in a structured manneer using oriented graphs. This database uses reference ontologies (e.g., Plant Ontology, Crop Ontology, etc.) and standards dedicated to this type of experiment such as the Minimal Information About Plant Phenotyping Experiment (MIAPPE) standard. Data sharing is facilitated on the one hand by respecting the FAIR principles (Findable Accessible Interoperable Reusable) and oon the other hand, by exporting this metadata relating to the experiment in tabulated formats or formatted for submission in the international databases (ISA-tab).",
"homepage": "https://services.cbib.u-bordeaux.fr/linda/",
"biotoolsID": "xeml-lab",
"biotoolsCURIE": "biotools:xeml-lab",
"tool_type": [
"Desktop application",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3292",
"http://edamontology.org/topic_0089",
"http://edamontology.org/topic_0219",
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_0091"
],
"primary_publication": [
"10.1111/j.1365-3040.2009.01964.x"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "CHen Zhui",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Emmanuel Bouilhol",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Yves Gibon",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Cecile Cabasson",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Université de Bordeaux (CGFB)",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Support"
],
"name": "Benjamin Dartigues",
"email": "benjamin.dartigues@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Benjamin Dartigues",
"email": "benjamin.dartigues@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer",
"Primary contact"
],
"name": "Benjamin Dartigues",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Yves Gibon",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Cecile Cabasson",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "UMR 1332 - Biologie du Fruit et Pathologie",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer",
"Contributor"
],
"name": "Alexis Groppi",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Centre de Bioinformatique de Bordeaux (CBiB)",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer",
"Contributor"
],
"name": "Macha Nikolski",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "INRA",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "u-bordeaux.fr",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "MIT",
"documentation": "https://services.cbib.u-bordeaux.fr/linda",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2022-09-27T14:48:43.394660Z",
"teams": [
"CBiB"
],
"source_repository": "https://services.cbib.u-bordeaux.fr/linda/"
},
{
"id": 277,
"name": "IMGT mAb-DB",
"description": "IMGT/mAb-DB is the IMGT® database for monoclonal antibodies (mAb) or immunoglobulins (IG), fusion proteins for immune applications (FPIA) and composite proteins for clinical applications (CPCA).\nIMGT/mAb-DB provides links to IMGT/2Dstructure-DB and IMGT/3Dstructure-DB.",
"homepage": "http://www.imgt.org/mAb-DB/",
"biotoolsID": "IMGT_mAb-DB",
"biotoolsCURIE": "biotools:IMGT_mAb-DB",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0804",
"http://edamontology.org/topic_3400"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Marie-Paule Lefranc",
"email": "marie-paule.Lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.Kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/mAb-DB/doc",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:20.810745Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 184,
"name": "VAST",
"description": "Tool for viewing protein structure neighbours.",
"homepage": "http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml",
"biotoolsID": "vast",
"biotoolsCURIE": "biotools:vast",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_2814",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_0736"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Stephen HBryant",
"email": "bryant@ncbi.nlm.nih.gov",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://www.ncbi.nlm.nih.gov/Structure/VAST/vasthelp.html",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2021-04-25T13:21:04Z",
"teams": [
"MIGALE"
],
"source_repository": null
},
{
"id": 122,
"name": "microSysMics",
"description": "This workflow provides an automated microbiome data analysis, starting with sequenced taxonomic markers (such as 16SrRNA) and using the standard QIIME2 toolbox to produce an abundance table and preliminary diversity, phylogeny and taxonomy analysis.",
"homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics",
"biotoolsID": "microSysMics",
"biotoolsCURIE": "biotools:microSysMics",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3697"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "BiRD bioinformatics facility",
"email": "pf-bird@univ-nantes.fr",
"url": "http://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LS2N",
"email": null,
"url": "http://www.ls2n.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [],
"name": "Michel Neunlist",
"email": "michel.neunlist@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-1892-5071",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Samuel Chaffron",
"email": "samuel.chaffron@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-5903-617X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact",
"Contributor"
],
"name": "Audrey Bihouée",
"email": "audrey.bihouee@univ-nantes.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-8689-2083",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Contributor"
],
"name": "Damien Vintache",
"email": "Damien.Vintache@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "TENS",
"email": null,
"url": "https://www.inserm-tens.com/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "BiRD",
"email": "pf-bird@univ-nantes.fr",
"url": "http://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Erwan Delage",
"email": "erwan.delage@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "Other",
"documentation": null,
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2023-09-19T15:06:56.878425Z",
"teams": [
"BiRD"
],
"source_repository": null
},
{
"id": 123,
"name": "DEPIB",
"description": "Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.",
"homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline",
"biotoolsID": "DEPIB",
"biotoolsCURIE": "biotools:DEPIB",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3308"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Provider",
"Support"
],
"name": "BiRD bioinformatics facility",
"email": "pf-bird@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Solenne Dumont",
"email": "solenne.dumont@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": "https://orcid.org/0000-0003-3237-7382",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "BiRD",
"email": "pf-bird@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
},
{
"type_role": [
"Primary contact",
"Developer",
"Support"
],
"name": "Eric Charpentier",
"email": "eric.charpentier@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Audrey Bihouée",
"email": "audrey.bihouee@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": "https://orcid.org/0000-0002-8689-2083",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Erwan Delage",
"email": "erwan.delage@univ-nantes.fr",
"url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Contributor"
],
"name": "Damien Vintache",
"email": "Damien.Vintache@univ-nantes.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-24T14:40:03.286943Z",
"teams": [
"BiRD"
],
"source_repository": null
},
{
"id": 57,
"name": "AnnotQTL",
"description": "Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.",
"homepage": "http://annotqtl.genouest.org/",
"biotoolsID": "annotqtl",
"biotoolsCURIE": "biotools:annotqtl",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0085"
],
"primary_publication": [
"10.1093/nar/gkr361"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "GenOuest",
"email": "support@genouest.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://annotqtl.genouest.org/tutorial",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T16:06:26.428724Z",
"teams": [],
"source_repository": null
},
{
"id": 72,
"name": "Insyght",
"description": "Browser that helps navigate among abundant homologies, syntenies and genes annotations.",
"homepage": "http://genome.jouy.inra.fr/Insyght",
"biotoolsID": "insyght",
"biotoolsCURIE": "biotools:insyght",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3301",
"http://edamontology.org/topic_3071"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "insyght@inra.fr",
"url": "http://genome.jouy.inra.fr/Insyght",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genome.jouy.inra.fr/Insyght_doc_online/",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:51:03.945288Z",
"teams": [],
"source_repository": null
},
{
"id": 27,
"name": "eDystrophin",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 25,
"name": "secreton",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 136,
"name": "AutoGRAPH",
"description": "Integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.",
"homepage": "http://autograph.genouest.org/",
"biotoolsID": "autograph",
"biotoolsCURIE": "biotools:autograph",
"tool_type": [
"Web service"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0102",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_0797"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Derrien T",
"email": "toma.derrien@gmail.com",
"url": "http://www-recomgen.univ-rennes1.fr/doggy.html",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://autograph.genouest.org/Tutorial.php",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:04:29.788401Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 26,
"name": "ppRNome Browser",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 39,
"name": "SPROUTS",
"description": "SPROUTS has two general functions.\nThe first is to provide existing mutation data given a protein specified by a PDB ID. This is Query mode.\nThe second is to generate new mutation data based on a new PDB ID or a user input. This is Submit mode.",
"homepage": "http://sprouts.rpbs.univ-paris-diderot.fr/",
"biotoolsID": "SPROUTS",
"biotoolsCURIE": "biotools:SPROUTS",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0199"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-11-30T13:37:17.543436Z",
"teams": [],
"source_repository": null
},
{
"id": 264,
"name": "PanExplorer",
"description": "A web-based tool for exploratory analysis and visualization of bacterial pan-genomes.",
"homepage": "http://panexplorer.southgreen.fr",
"biotoolsID": "panexplorer",
"biotoolsCURIE": "biotools:panexplorer",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3382",
"http://edamontology.org/topic_3299",
"http://edamontology.org/topic_3175"
],
"primary_publication": [],
"operating_system": [
"Mac",
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [],
"name": "Alexis Dereeper",
"email": "alexis.dereeper@ird.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-8120-8409",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Damien F Meyer",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Marilyne Summo",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T15:26:52.796766Z",
"teams": [
"South Green"
],
"source_repository": "https://github.com/SouthGreenPlatform/PanExplorer"
},
{
"id": 276,
"name": "ODAMNet",
"description": "A Python package to study molecular relationship between environmental factors and rare diseases.",
"homepage": "https://pypi.org/project/ODAMNet/",
"biotoolsID": "odamnet",
"biotoolsCURIE": "biotools:odamnet",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0602"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [],
"name": "Morgane Térézol",
"email": "morgane.terezol@univ-amu.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-4090-2573",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Anaïs Baudot",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0003-0885-7933",
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Ozan Ozisik",
"email": null,
"url": null,
"orcidid": "https://orcid.org/0000-0001-5980-8002",
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": "https://odamnet.readthedocs.io/en/latest/",
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:02:02.850639Z",
"teams": [],
"source_repository": "https://github.com/MOohTus/ODAMNet"
},
{
"id": 151,
"name": "ReproGenomics Viewer",
"description": "The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community.",
"homepage": "http://rgv.genouest.org",
"biotoolsID": "reprogenomics_viewer",
"biotoolsCURIE": "biotools:reprogenomics_viewer",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3420"
],
"primary_publication": [
"10.1093/nar/gkv345"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer"
],
"name": "Thomas Darde",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "irisa.fr",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Maintainer"
],
"name": "Olivier Sallou",
"email": "olivier.sallou@irisa.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Maintainer",
"Primary contact"
],
"name": "Frédéric Chalmel",
"email": "frederic.chalmel@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://rgv.genouest.org/tuto.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:22:51.040462Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 270,
"name": "IMGT V-QUEST",
"description": "IMGT/V-QUEST is the IMGT® tool for nucleotide sequence alignment and analysis of immunoglobulin (IG) or antibody and T cell receptor (TR) variable domains, integrates IMGT/JunctionAnalysis, IMGT/Automat and IMGT/Collier-de-Perles.\nAnalysis is based on the IMGT-ONTOLOGY concepts.",
"homepage": "http://www.imgt.org/IMGT_vquest",
"biotoolsID": "imgt_v-quest",
"biotoolsCURIE": "biotools:imgt_v-quest",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_3930",
"http://edamontology.org/topic_3948",
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "Patrice Duroux",
"email": "patrice.duroux@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Sofia Kossida",
"email": "sofia.kossida@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Marie-Paule Lefranc",
"email": "Marie-Paule.Lefranc@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Véronique Giudicelli",
"email": "veronique.giudicelli@igh.cnrs.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.imgt.org/IMGT_vquest/user_guide",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:59:09.724903Z",
"teams": [
"IMGT"
],
"source_repository": null
},
{
"id": 268,
"name": "ChagasDB",
"description": "Manual-curated database regrouping published results referenced in Pubmed.",
"homepage": "https://chagasdb.tagc.univ-amu.fr",
"biotoolsID": "chagasdb",
"biotoolsCURIE": "biotools:chagasdb",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_3334",
"http://edamontology.org/topic_3305",
"http://edamontology.org/topic_3421"
],
"primary_publication": [],
"operating_system": [
"Mac",
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [],
"name": "Edecio Cunha-Neto",
"email": "edecunha@gmail.com",
"url": null,
"orcidid": "https://orcid.org/0000-0002-3699-3345",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Lionel Spinelli",
"email": "lionel.spinelli@univ-amu.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-9228-8141",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Christophe Chevillard",
"email": "christophe.chevillard@univ-amu.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-5269-8813",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T14:25:34.821693Z",
"teams": [],
"source_repository": "https://github.com/TAGC-ComplexDisease/ChagasDB"
},
{
"id": 20,
"name": "PRIAM",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 157,
"name": "OCG",
"description": "Creates an overlapping class system from an unweighted simple graph G = (V,E).OCG is essentially a hierarchical ascending algorithm. By default, it will fuse the initial classes until further fusions do not increase the modularity but other options are available.",
"homepage": "http://tagc.univ-mrs.fr/tagc/index.php/software/17",
"biotoolsID": "ocg",
"biotoolsCURIE": "biotools:ocg",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_1775"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Brun C",
"email": "brun@tagc.univ-mrs.fr",
"url": "http://tagc.univ-mrs.fr/tagc/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://tagc.univ-mrs.fr/tagc/index.php/software/17",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T16:02:04.280293Z",
"teams": [
"TAGC-BU"
],
"source_repository": null
}
]
}