HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 211,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=unique_visits",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=80&ordering=unique_visits",
"results": [
{
"id": 260,
"name": "CulebrONT",
"description": "CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.",
"homepage": "https://github.com/SouthGreenPlatform/CulebrONT_pipeline",
"biotoolsID": "culebront",
"biotoolsCURIE": "biotools:culebront",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_0621"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-01-10T14:00:06.343876Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 106,
"name": "Lifemap",
"description": "Explorer of the entire tree of life. Lifemap allows visualizing the entire NCBI taxonomy on a single page with a deep zoom interface and performing easy search, mrca detection, subtree download, etc.",
"homepage": "http://lifemap.univ-lyon1.fr",
"biotoolsID": "Lifemap",
"biotoolsCURIE": "biotools:Lifemap",
"tool_type": [
"Web service",
"Web application"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3299",
"http://edamontology.org/topic_3050"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [],
"tool_licence": "CC-BY-NC-4.0",
"documentation": "http://lifemap.univ-lyon1.fr/help/",
"maturity": "Legacy",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-06-16T10:55:27Z",
"teams": [],
"source_repository": "https://github.com/damiendevienne/Lifemap"
},
{
"id": 93,
"name": "MicroScope platform",
"description": "MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts.",
"homepage": "https://mage.genoscope.cns.fr/microscope/",
"biotoolsID": "MicroScope_platform",
"biotoolsCURIE": "biotools:MicroScope_platform",
"tool_type": [
"Bioinformatics portal",
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019",
"fr"
],
"scientific_topics": [
"http://edamontology.org/topic_3301",
"http://edamontology.org/topic_0085",
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_2259",
"http://edamontology.org/topic_0219"
],
"primary_publication": [
"10.1093/nar/gks1194",
"10.1093/database/bap021",
"10.1093/nar/gkj406",
"10.1093/nar/gkw1101",
"10.1093/bib/bbx113",
"10.1093/nar/gkz926"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact",
"Support",
"Developer",
"Provider"
],
"name": "LABGeM - CEA/Genosocope - UMR8030",
"email": "labgem@genoscope.cns.fr",
"url": "https://labgem.genoscope.cns.fr",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "https://microscope.readthedocs.io/en/stable/",
"maturity": "Mature",
"cost": "Free of charge (with restrictions)",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-06-16T10:55:28Z",
"teams": [
"MicroScope"
],
"source_repository": null
},
{
"id": 208,
"name": "MindTheGap",
"description": "Performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.",
"homepage": "https://gatb.inria.fr/software/mind-the-gap/",
"biotoolsID": "mindthegap",
"biotoolsCURIE": "biotools:mindthegap",
"tool_type": [
"Command-line tool"
],
"collection": [
"GATB"
],
"scientific_topics": [
"http://edamontology.org/topic_0199"
],
"primary_publication": [
"10.1093/bioinformatics/btu545"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "GenOuest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Claire Lemaitre",
"email": "claire.lemaitre@inria.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://gatb.inria.fr/software/mind-the-gap/",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:58:48.627968Z",
"teams": [
"GenOuest"
],
"source_repository": null
},
{
"id": 81,
"name": "MatrixDB",
"description": "It is a database focused on interactions established by extracellular proteins and polysaccharides. It takes into account the multimeric nature of several extracellular protein families for the curation of interactions, and reports interactions with individual polypeptide chains or with multimers, considered as permanent complexes.",
"homepage": "http://matrixdb.univ-lyon1.fr/",
"biotoolsID": "matrixdb",
"biotoolsCURIE": "biotools:matrixdb",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0602",
"http://edamontology.org/topic_0128",
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0078"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "MatrixDB Support",
"email": "sylvie.ricard-blum@univ-lyon1.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-9263-1851",
"gridid": null,
"typeEntity": "Person",
"note": "Professor at University Lyon 1, head of a team working on structure-interaction-function relationships of the extracellular matrix and extracellular matrix interaction networks."
}
],
"tool_licence": null,
"documentation": "http://matrixdb.univ-lyon1.fr/",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:29:32.794189Z",
"teams": [],
"source_repository": null
},
{
"id": 247,
"name": "metagWGS",
"description": "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.",
"homepage": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs",
"biotoolsID": "metagwgs",
"biotoolsCURIE": "biotools:metagwgs",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3391",
"http://edamontology.org/topic_3174"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Claire Hoede",
"email": "claire.hoede@inrae.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-5054-7731",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "GenoToul bioinformatics facility",
"email": null,
"url": "http://bioinfo.genotoul.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Division",
"note": null
}
],
"tool_licence": null,
"documentation": "https://genotoul-bioinfo.pages-forge.inrae.fr/metagwgs/master/index.html",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-11-30T07:02:02.632207Z",
"teams": [
"Genotoul-bioinfo"
],
"source_repository": "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs"
},
{
"id": 88,
"name": "MetExplore",
"description": "Metabolic network curation, visualisation and omics data analysis. It is possible to curate and annotate metabolic networks in a collaborative environment. Several tools are available for metabolomics data mapping in networks and visualisation.",
"homepage": "http://www.metexplore.fr/",
"biotoolsID": "metexplore",
"biotoolsCURIE": "biotools:metexplore",
"tool_type": [
"Web service",
"Web application",
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019",
"EBI Training Tools"
],
"scientific_topics": [
"http://edamontology.org/topic_0602"
],
"primary_publication": [
"10.1093/nar/gky301",
"10.1093/nar/gkq312"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [],
"name": "MetaboHub",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "ludovic.cottret@inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Fabien JOURDAN",
"email": "fabien.jourdan@inra.fr",
"url": "https://sites.google.com/site/fabienjourdan/",
"orcidid": "https://orcid.org/0000-0001-9401-2894",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Support"
],
"name": null,
"email": "metexplore@oulouse.inra.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2025-04-28T07:17:11.601858Z",
"teams": [],
"source_repository": null
},
{
"id": 121,
"name": "LoRDEC",
"description": "Program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads.",
"homepage": "http://www.atgc-montpellier.fr/lordec/",
"biotoolsID": "lordec",
"biotoolsCURIE": "biotools:lordec",
"tool_type": [
"Command-line tool"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_3071",
"http://edamontology.org/topic_0091"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leena Salmela",
"email": "leena.salmela@cs.Helsinki.FI",
"url": "https://www.cs.helsinki.fi/u/lmsalmel/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Eric Rivals",
"email": "rivals@lirmm.fr",
"url": "http://www.lirmm.fr/~rivals/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "LIRMM",
"email": null,
"url": "http://www.lirmm.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.atgc-montpellier.fr/lordec/",
"maturity": "Mature",
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:01:03.046535Z",
"teams": [
"ATGC"
],
"source_repository": null
},
{
"id": 3,
"name": "Rice Genome Hub",
"description": "An open source database(s) for genetics, genomics and functional research in rice species",
"homepage": "https://rice-genome-hub.southgreen.fr/",
"biotoolsID": "Rice_Genome_Hub",
"biotoolsCURIE": "biotools:Rice_Genome_Hub",
"tool_type": [
"Database portal"
],
"collection": [
"Genome Hub",
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3321",
"http://edamontology.org/topic_3366",
"http://edamontology.org/topic_0780"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "manuel.ruiz@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-8153-276X",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "christine.tranchant@ird.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0001-6934-1215",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "CRP Rice",
"email": null,
"url": "http://ricecrp.org/",
"orcidid": null,
"gridid": null,
"typeEntity": "Funding agency",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "gaetan.droc@cirad.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0003-1849-1269",
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-06-16T10:55:27Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 31,
"name": "Orphadata",
"description": "A comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format.",
"homepage": "http://www.orphadata.org/",
"biotoolsID": "orphadata",
"biotoolsCURIE": "biotools:orphadata",
"tool_type": [
"Database portal",
"Web API",
"SPARQL endpoint"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3325",
"http://edamontology.org/topic_0089",
"http://edamontology.org/topic_3068"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Marc Hanauer",
"email": "marc.hanauer@inserm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Céline Rousselot",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Samuel Demarest",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Orphanet Inserm",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": "CC-BY-4.0",
"documentation": "http://www.orphadata.org/cgi-bin/index.php/",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T13:46:06.717312Z",
"teams": [],
"source_repository": null
},
{
"id": 38,
"name": "MoonDB",
"description": "MoonDB is a database containing predicted Extreme Multifunctional (EMF) proteins (i.e. proteins with several unrelated functions), as well as a set of manually curated moonlighting proteins. Moonlighting proteins are a subclass of multifunctional proteins.",
"homepage": "http://moondb.hb.univ-amu.fr/",
"biotoolsID": "MoonDB",
"biotoolsCURIE": "biotools:MoonDB",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0623"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2019-11-06T11:40:39Z",
"teams": [],
"source_repository": null
},
{
"id": 75,
"name": "NAPP",
"description": "Nucleic Acid Phylogenetic Profile Database: classifies coding and non-coding sequences in a genome according to their pattern of conservation across other genomes.",
"homepage": "http://napp.u-psud.fr/",
"biotoolsID": "napp",
"biotoolsCURIE": "biotools:napp",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_3511",
"http://edamontology.org/topic_0077",
"http://edamontology.org/topic_0097"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "NAPP Support",
"email": "napp.biologie@u-psud.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://rna.igmors.u-psud.fr/NAPP/Help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:05:27.630660Z",
"teams": [],
"source_repository": null
},
{
"id": 32,
"name": "Orphanet",
"description": "Information on rare diseases and orphan drugs.",
"homepage": "http://www.orpha.net/consor/cgi-bin/index.php",
"biotoolsID": "orphanet",
"biotoolsCURIE": "biotools:orphanet",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [
"Rare Disease",
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0634",
"http://edamontology.org/topic_3325"
],
"primary_publication": [
"10.1002/humu.22078"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "Inserm US14",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://www.orpha.net/consor/cgi-bin/Directory_Contact.php?lng=EN",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.orpha.net/consor/cgi-bin/Education_EducationTools.php?stapage=HM_BLOC_HEADER_HELP_SITEMAP&lng=EN",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:58:27.798370Z",
"teams": [],
"source_repository": null
},
{
"id": 65,
"name": "OrthoInspector",
"description": "Software system incorporating an original algorithm for the rapid detection of orthology and inparalogy relations between different species.",
"homepage": "http://lbgi.igbmc.fr/orthoinspector/",
"biotoolsID": "orthoinspector",
"biotoolsCURIE": "biotools:orthoinspector",
"tool_type": [
"Database portal",
"Desktop application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Odile Lecompte",
"email": "odile.lecompte@unistra.fr",
"url": "http://alnitak.u-strasbg.fr/lbgi/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://lbgi.igbmc.fr/orthoinspector/index.php?option=com_content&view=article&id=50:tutorial-prepare-data-to-create-your-own-database&catid=3:tutorials&Itemid=6",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T13:55:18.202290Z",
"teams": [
"BiGEst"
],
"source_repository": null
},
{
"id": 73,
"name": "mosaic",
"description": "Software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.",
"homepage": "http://www.zoology.ubc.ca/prog/mosaic/",
"biotoolsID": "mosaic",
"biotoolsCURIE": "biotools:mosaic",
"tool_type": [
"Database portal",
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3053",
"http://edamontology.org/topic_3056",
"http://edamontology.org/topic_3299"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Leithen K. M’Gonigle",
"email": "mgonigle@zoology.ubc.ca",
"url": "http://www.zoology.ubc.ca/~fitzjohn",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.zoology.ubc.ca/prog/mosaic/mosaic-manual.pdf",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T15:20:53.826983Z",
"teams": [],
"source_repository": null
},
{
"id": 68,
"name": "NORINE",
"description": "NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis.",
"homepage": "http://norine.univ-lille.fr/norine/",
"biotoolsID": "NORINE",
"biotoolsCURIE": "biotools:NORINE",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3332",
"http://edamontology.org/topic_3301",
"http://edamontology.org/topic_3307",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_3071"
],
"primary_publication": [
"10.1093/nar/gkz1000"
],
"operating_system": [],
"tool_credit": [
{
"type_role": [],
"name": "Norine team",
"email": "norine@univ-lille.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "CC-BY-NC-SA-4.0",
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-07-21T13:25:21.706482Z",
"teams": [
"Bilille"
],
"source_repository": null
},
{
"id": 44,
"name": "Molligen",
"description": "Database dedicated to the comparative genomics of bacteria belonging to the class Mollicutes. It provides annotated sequence data and analysis for 72 genomes belonging to 51 species. The database provides genome and genetic element pages, homology relationship defined by various methods, pre-computed statistics, metabolic pathways, and a huge collection of tools for exploring and comparing genomes.",
"homepage": "https://services.cbib.u-bordeaux.fr/molligen4/",
"biotoolsID": "molligen",
"biotoolsCURIE": "biotools:molligen",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0797",
"http://edamontology.org/topic_3301"
],
"primary_publication": [
"10.1093/nar/gkh114"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Contributor"
],
"name": "Alain Blanchard",
"email": null,
"url": null,
"orcidid": "http://orcid.org/0000-0003-4223-5185",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Provider"
],
"name": "Centre de Bioinformatique de Bordeaux (CBiB)",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Aurelien Barré",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Aurélien Barré",
"email": "aurelien.barre@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Pascal Sirand-Pugnet",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Université de Bordeaux",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [],
"name": "INRA",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Consortium",
"note": null
},
{
"type_role": [
"Support"
],
"name": "Aurelien Barré",
"email": "aurelien.barre@u-bordeaux.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [
"Provider"
],
"name": "u-bordeaux.fr",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
}
],
"tool_licence": null,
"documentation": "http://services.cbib.u-bordeaux.fr/molligen/CREDITS/data/MolliGen_Tutorial_2012.pdf",
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T15:35:08.058762Z",
"teams": [
"CBiB"
],
"source_repository": null
},
{
"id": 244,
"name": "NGphylogeny.fr",
"description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
"homepage": "https://ngphylogeny.fr/",
"biotoolsID": "NGphylogeny.fr",
"biotoolsCURIE": "biotools:NGphylogeny.fr",
"tool_type": [
"Web application",
"Workflow",
"Bioinformatics portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0091"
],
"primary_publication": [
"10.1093/nar/gkz303"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Developer",
"Maintainer",
"Primary contact"
],
"name": "Frédéric Lemoine",
"email": "frederic.lemoine@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Developer"
],
"name": "Damien Correia",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Contributor"
],
"name": "Fabien Mareuil",
"email": "fmareuil@pasteur.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact",
"Contributor"
],
"name": "Vincent Lefort",
"email": "vincent.lefort@lirmm.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://ngphylogeny.fr/documentation",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:59:31.390401Z",
"teams": [],
"source_repository": null
},
{
"id": 243,
"name": "RAPPAS",
"description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
"homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
"biotoolsID": "RAPPAS",
"biotoolsCURIE": "biotools:RAPPAS",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0091",
"http://edamontology.org/topic_0637",
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_3174"
],
"primary_publication": [
"10.1093/bioinformatics/btz068"
],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Developer"
],
"name": "Benjamin Linard",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
"maturity": "Emerging",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-24T20:59:27.880847Z",
"teams": [],
"source_repository": null
},
{
"id": 113,
"name": "ParameciumDB",
"description": "Online community database for Paramecium species. Contains annotation of genome sequences and features, genome-wide data sets, advanced capabilities to query, retrieve, visualize and compare data.",
"homepage": "https://paramecium.i2bc.paris-saclay.fr",
"biotoolsID": "parameciumdb",
"biotoolsCURIE": "biotools:parameciumdb",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0089",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0160",
"http://edamontology.org/topic_3321"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Contact Form",
"email": null,
"url": "https://paramecium.i2bc.paris-saclay.fr/cgi/user/contact",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Terms of Use",
"email": null,
"url": "https://paramecium.i2bc.paris-saclay.fr/parawiki/Terms_of_Use",
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": "CC-BY-4.0",
"documentation": null,
"maturity": "Mature",
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:30.463079Z",
"teams": [],
"source_repository": null
}
]
}