HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 233,
"next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=-maturity",
"previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=80&ordering=-maturity",
"results": [
{
"id": 19,
"name": "PhylOPDb",
"description": "Phylogenetic Oligonucleotide Probe Database. Provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes.",
"homepage": "http://g2im.u-clermont1.fr/phylopdb/help.php",
"biotoolsID": "phylopdb",
"biotoolsCURIE": "biotools:phylopdb",
"tool_type": [
"Database portal",
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0632",
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_3518"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "pierre.peyret@udamail.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://g2im.u-clermont1.fr/phylopdb/help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2018-12-10T12:58:58Z",
"teams": [],
"source_repository": null
},
{
"id": 22,
"name": "ProDom protein domain database",
"description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
"homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
"biotoolsID": "prodom",
"biotoolsCURIE": "biotools:prodom",
"tool_type": [
"Database portal"
],
"collection": [
"DRCAT"
],
"scientific_topics": [
"http://edamontology.org/topic_0623",
"http://edamontology.org/topic_0736"
],
"primary_publication": [
"10.1093/nar/28.1.267"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Documentor"
],
"name": "DRCAT",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Project",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:21:05.113834Z",
"teams": [],
"source_repository": null
},
{
"id": 170,
"name": "RNAspace",
"description": "A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.",
"homepage": "http://www.rnaspace.org/",
"biotoolsID": "rnaspace",
"biotoolsCURIE": "biotools:rnaspace",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0659",
"http://edamontology.org/topic_0099",
"http://edamontology.org/topic_0219"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "Marie-Josee.Cros@inra.fr",
"url": "http://rnaspace.org/partners",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://www.rnaspace.org/help/#help1",
"maturity": null,
"cost": null,
"unique_visits": 14318,
"citations": null,
"annual_visits": 17558,
"last_update": "2018-12-10T12:58:50Z",
"teams": [],
"source_repository": null
},
{
"id": 119,
"name": "RSAT suite",
"description": "Regulatory Sequence Analysis Tools (RSAT) is a software suite combining specialised tools for the detection of regulatory signals in non-coding sequences. It includes tools for sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Tools may be accessed separately or connected to other tools. As well, the tools are available as web services for integration into programmatic work flows.",
"homepage": "http://rsat.eu",
"biotoolsID": "rsat",
"biotoolsCURIE": "biotools:rsat",
"tool_type": [
"Web application",
"Suite"
],
"collection": [
"elixir-fr-sdp-2019",
"Animal and Crop Genomics"
],
"scientific_topics": [
"http://edamontology.org/topic_0621",
"http://edamontology.org/topic_0749",
"http://edamontology.org/topic_0203",
"http://edamontology.org/topic_3125",
"http://edamontology.org/topic_3512"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Jacques van Helden",
"email": "Jacques.van-Helden@univ-amu.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": "Other",
"documentation": "http://rsat.eu",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2024-11-25T14:00:33.330732Z",
"teams": [
"TAGC-BU"
],
"source_repository": null
},
{
"id": 39,
"name": "SPROUTS",
"description": "SPROUTS has two general functions.\nThe first is to provide existing mutation data given a protein specified by a PDB ID. This is Query mode.\nThe second is to generate new mutation data based on a new PDB ID or a user input. This is Submit mode.",
"homepage": "http://sprouts.rpbs.univ-paris-diderot.fr/",
"biotoolsID": "SPROUTS",
"biotoolsCURIE": "biotools:SPROUTS",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0199"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-11-30T13:37:17.543436Z",
"teams": [],
"source_repository": null
},
{
"id": 183,
"name": "SHOW",
"description": "Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.",
"homepage": "http://genome.jouy.inra.fr/ssb/SHOW/",
"biotoolsID": "show",
"biotoolsCURIE": "biotools:show",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3320",
"http://edamontology.org/topic_0160",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0654",
"http://edamontology.org/topic_3372"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "https://www.ssbgroup.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:58Z",
"teams": [
"MIGALE"
],
"source_repository": null
},
{
"id": 147,
"name": "SortMeRNA",
"description": "Sequence analysis tool for filtering, mapping and OTU-picking NGS reads.",
"homepage": "https://bioinfo.cristal.univ-lille.fr/RNA/sortmerna/",
"biotoolsID": "sortmerna",
"biotoolsCURIE": "biotools:sortmerna",
"tool_type": [
"Web application",
"Command-line tool"
],
"collection": [
"ELIXIR Trainer Tools"
],
"scientific_topics": [
"http://edamontology.org/topic_3308",
"http://edamontology.org/topic_3941",
"http://edamontology.org/topic_3174"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "https://github.com/biocore/sortmerna/issues",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "https://github.com/sortmerna/sortmerna/issues",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/sortmerna/sortmerna/wiki/User-manual-v4.3.2",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-24T14:49:42.747317Z",
"teams": [
"Bilille"
],
"source_repository": null
},
{
"id": 116,
"name": "SulfAtlas",
"description": "SulfAtlas describes the family and sub-families of structurally-related sulfatases. Sub-families are created based on phylogenetic analyses and essentially correspond to different substrate specificities",
"homepage": "https://sulfatlas.sb-roscoff.fr/",
"biotoolsID": "SulfAtlas",
"biotoolsCURIE": "biotools:SulfAtlas",
"tool_type": [
"Database portal"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3068",
"http://edamontology.org/topic_0154",
"http://edamontology.org/topic_0160",
"http://edamontology.org/topic_3174",
"http://edamontology.org/topic_3293",
"http://edamontology.org/topic_0623"
],
"primary_publication": [],
"operating_system": [
"Mac",
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [],
"name": "Tristan Barbeyron",
"email": "tristan.barbeyron@sb-roscoff.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Gurvan Michel",
"email": "gurvan@sb-roscoff.fr",
"url": null,
"orcidid": "https://orcid.org/0000-0002-3009-6205",
"gridid": null,
"typeEntity": "Person",
"note": null
},
{
"type_role": [],
"name": "Mark Stam",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
},
{
"type_role": [],
"name": "Pernelle Lelièvre",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": null,
"note": null
}
],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": "Free of charge",
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2023-01-25T21:30:47.860975Z",
"teams": [],
"source_repository": null
},
{
"id": 142,
"name": "SeaView",
"description": "Multiplatform graphical user interface designed to facilitate alignment and phylogenic tree building from molecular sequences.",
"homepage": "http://doua.prabi.fr/software/seaview",
"biotoolsID": "seaview",
"biotoolsCURIE": "biotools:seaview",
"tool_type": [
"Command-line tool",
"Desktop application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0092",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0084"
],
"primary_publication": [
"10.1093/molbev/msp259"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Provider"
],
"name": "IFB ELIXIR-FR",
"email": null,
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Institute",
"note": null
},
{
"type_role": [
"Primary contact"
],
"name": "Manolo Gouy",
"email": "mgouy@biomserv.uni-lyon1.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://doua.prabi.fr/main/index",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2024-11-25T15:49:59.006607Z",
"teams": [
"PRABI-Lyon-Grenoble"
],
"source_repository": null
},
{
"id": 118,
"name": "SouthGreen_Galaxy Not found.",
"description": "A Galaxy instance focused on agriculture, food, biodiversity and environment, from the Agropolis campus in France.",
"homepage": "http://galaxy.southgreen.fr/galaxy",
"biotoolsID": "SouthGreen_Galaxy",
"biotoolsCURIE": "biotools:SouthGreen_Galaxy",
"tool_type": [
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3810"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": "https://southgreen.fr/content/galaxy-tool",
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-01-24T09:53:10Z",
"teams": [],
"source_repository": null
},
{
"id": 184,
"name": "VAST",
"description": "Tool for viewing protein structure neighbours.",
"homepage": "http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml",
"biotoolsID": "vast",
"biotoolsCURIE": "biotools:vast",
"tool_type": [
"Web application"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_2814",
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_0082",
"http://edamontology.org/topic_0736"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Stephen HBryant",
"email": "bryant@ncbi.nlm.nih.gov",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://www.ncbi.nlm.nih.gov/Structure/VAST/vasthelp.html",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2021-04-25T13:21:04Z",
"teams": [
"MIGALE"
],
"source_repository": null
},
{
"id": 173,
"name": "Tango",
"description": "A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.",
"homepage": "http://tango.crg.es/",
"biotoolsID": "tango",
"biotoolsCURIE": "biotools:tango",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0078",
"http://edamontology.org/topic_3510",
"http://edamontology.org/topic_0081"
],
"primary_publication": [],
"operating_system": [
"Linux",
"Windows"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": null,
"url": "http://tango.crg.es/support.jsp",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "http://tango.crg.es/Tango_Handbook.pdf",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:45Z",
"teams": [
"CBiB"
],
"source_repository": null
},
{
"id": 148,
"name": "Vidjil",
"description": "Open-source platform for the interactive analysis of high-throughput sequencing data from lymphocyte recombinations. It contains an algorithm gathering reads into clonotypes according to their V(D)J junctions, a web application made of a sample, experiment and patient database and a visualization for the analysis of clonotypes along the time.",
"homepage": "http://www.vidjil.org/",
"biotoolsID": "vidjil",
"biotoolsCURIE": "biotools:vidjil",
"tool_type": [
"Web application",
"Web interface",
" Command-line"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0804"
],
"primary_publication": [
"10.1371/journal.pone.0172249"
],
"operating_system": [
"Linux",
"Windows",
"Mac"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Support",
"email": "contact@vidjil.org",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/vidjil/vidjil",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:58Z",
"teams": [
"Bilille"
],
"source_repository": null
},
{
"id": 128,
"name": "Tedna",
"description": "A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.",
"homepage": "http://urgi.versailles.inra.fr/Tools/Tedna",
"biotoolsID": "tedna",
"biotoolsCURIE": "biotools:tedna",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0080",
"http://edamontology.org/topic_0654"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": null,
"email": "urgi-contact@versailles.inra.fr",
"url": "https://urgi.versailles.inra.fr/",
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf",
"maturity": null,
"cost": null,
"unique_visits": 557,
"citations": null,
"annual_visits": 1872,
"last_update": "2018-12-10T12:58:49Z",
"teams": [],
"source_repository": null
},
{
"id": 124,
"name": "TOGGLE",
"description": "Toolbox for generic NGS analyses.",
"homepage": "https://github.com/SouthGreenPlatform/TOGGLE",
"biotoolsID": "toggle",
"biotoolsCURIE": "biotools:toggle",
"tool_type": [
"Command-line tool"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_3168",
"http://edamontology.org/topic_0080"
],
"primary_publication": [],
"operating_system": [
"Linux"
],
"tool_credit": [
{
"type_role": [
"Primary contact"
],
"name": "Support",
"email": "toggle@ird.fr",
"url": null,
"orcidid": null,
"gridid": null,
"typeEntity": "Person",
"note": null
}
],
"tool_licence": null,
"documentation": "https://github.com/SouthGreenPlatform/TOGGLE",
"maturity": null,
"cost": null,
"unique_visits": 0,
"citations": null,
"annual_visits": 0,
"last_update": "2018-12-10T12:58:58Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 260,
"name": "CulebrONT",
"description": "CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.",
"homepage": "https://github.com/SouthGreenPlatform/CulebrONT_pipeline",
"biotoolsID": "culebront",
"biotoolsCURIE": "biotools:culebront",
"tool_type": [
"Workflow"
],
"collection": [],
"scientific_topics": [
"http://edamontology.org/topic_0196",
"http://edamontology.org/topic_0769",
"http://edamontology.org/topic_0621"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2022-01-10T14:00:06.343876Z",
"teams": [
"South Green"
],
"source_repository": null
},
{
"id": 10,
"name": "Dog CNV database",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 11,
"name": "MacSyDB-TXSSdb",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 12,
"name": "Listeriomics : Systems Biology of Listeria",
"description": "",
"homepage": null,
"biotoolsID": "",
"biotoolsCURIE": "",
"tool_type": [
"Database portal"
],
"collection": [],
"scientific_topics": [],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": null,
"teams": [],
"source_repository": null
},
{
"id": 114,
"name": "GalaxEast",
"description": "GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses.",
"homepage": "http://www.galaxeast.fr/",
"biotoolsID": "GalaxEast",
"biotoolsCURIE": "biotools:GalaxEast",
"tool_type": [
"Workbench"
],
"collection": [
"elixir-fr-sdp-2019"
],
"scientific_topics": [
"http://edamontology.org/topic_3391"
],
"primary_publication": [],
"operating_system": [],
"tool_credit": [],
"tool_licence": null,
"documentation": null,
"maturity": null,
"cost": null,
"unique_visits": null,
"citations": null,
"annual_visits": null,
"last_update": "2020-01-24T09:54:41Z",
"teams": [],
"source_repository": null
}
]
}