GET /api/tool/?format=api&offset=100&ordering=-cost
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 233,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=120&ordering=-cost",
    "previous": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=80&ordering=-cost",
    "results": [
        {
            "id": 39,
            "name": "SPROUTS",
            "description": "SPROUTS has two general functions.\nThe first is to provide existing mutation data given a protein specified by a PDB ID. This is Query mode.\nThe second is to generate new mutation data based on a new PDB ID or a user input. This is Submit mode.",
            "homepage": "http://sprouts.rpbs.univ-paris-diderot.fr/",
            "biotoolsID": "SPROUTS",
            "biotoolsCURIE": "biotools:SPROUTS",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0199"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2022-11-30T13:37:17.543436Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 19,
            "name": "PhylOPDb",
            "description": "Phylogenetic Oligonucleotide Probe Database. Provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes.",
            "homepage": "http://g2im.u-clermont1.fr/phylopdb/help.php",
            "biotoolsID": "phylopdb",
            "biotoolsCURIE": "biotools:phylopdb",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0632",
                "http://edamontology.org/topic_3518",
                "http://edamontology.org/topic_3293"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "pierre.peyret@udamail.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://g2im.u-clermont1.fr/phylopdb/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 22,
            "name": "ProDom protein domain database",
            "description": "A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.",
            "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
            "biotoolsID": "prodom",
            "biotoolsCURIE": "biotools:prodom",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "DRCAT"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0736",
                "http://edamontology.org/topic_0623"
            ],
            "primary_publication": [
                "10.1093/nar/28.1.267"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://prodom.prabi.fr/prodom/current/html/prodom_team.php",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "DRCAT",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Project",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://prodom.prabi.fr/prodom/current/documentation/help.php",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:21:05.113834Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 198,
            "name": "RASTA-Bacteria",
            "description": "Automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.",
            "homepage": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/",
            "biotoolsID": "rasta-bacteria",
            "biotoolsCURIE": "biotools:rasta-bacteria",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0154",
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_0654"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Frédérique Hubler",
                    "email": "fhubler@univ-rennes1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Emeric Sevin",
                    "email": "esevin@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genoweb1.irisa.fr/duals/RASTA-Bacteria/index.php?page=faq",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T16:14:59.683127Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 119,
            "name": "RSAT suite",
            "description": "Regulatory Sequence Analysis Tools (RSAT) is a software suite combining specialised tools for the detection of regulatory signals in non-coding sequences. It includes tools for sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Tools may be accessed separately or connected to other tools. As well, the tools are available as web services for integration into programmatic work flows.",
            "homepage": "http://rsat.eu",
            "biotoolsID": "rsat",
            "biotoolsCURIE": "biotools:rsat",
            "tool_type": [
                "Web application",
                "Suite"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "Animal and Crop Genomics"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3125",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0749"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Jacques van Helden",
                    "email": "Jacques.van-Helden@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Other",
            "documentation": "http://rsat.eu",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:33.330732Z",
            "teams": [
                "TAGC-BU"
            ],
            "source_repository": null
        },
        {
            "id": 183,
            "name": "SHOW",
            "description": "Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.",
            "homepage": "http://genome.jouy.inra.fr/ssb/SHOW/",
            "biotoolsID": "show",
            "biotoolsCURIE": "biotools:show",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3320",
                "http://edamontology.org/topic_0160",
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://www.ssbgroup.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        },
        {
            "id": 184,
            "name": "VAST",
            "description": "Tool for viewing protein structure neighbours.",
            "homepage": "http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml",
            "biotoolsID": "vast",
            "biotoolsCURIE": "biotools:vast",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_2814",
                "http://edamontology.org/topic_0078",
                "http://edamontology.org/topic_0736",
                "http://edamontology.org/topic_0082"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Stephen HBryant",
                    "email": "bryant@ncbi.nlm.nih.gov",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://www.ncbi.nlm.nih.gov/Structure/VAST/vasthelp.html",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2021-04-25T13:21:04Z",
            "teams": [
                "MIGALE"
            ],
            "source_repository": null
        },
        {
            "id": 173,
            "name": "Tango",
            "description": "A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.",
            "homepage": "http://tango.crg.es/",
            "biotoolsID": "tango",
            "biotoolsCURIE": "biotools:tango",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3510",
                "http://edamontology.org/topic_0081",
                "http://edamontology.org/topic_0078"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "http://tango.crg.es/support.jsp",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://tango.crg.es/Tango_Handbook.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:45Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": null
        },
        {
            "id": 148,
            "name": "Vidjil",
            "description": "Open-source platform for the interactive analysis of high-throughput sequencing data from lymphocyte recombinations. It contains an algorithm gathering reads into clonotypes according to their V(D)J junctions, a web application made of a sample, experiment and patient database and a visualization for the analysis of clonotypes along the time.",
            "homepage": "http://www.vidjil.org/",
            "biotoolsID": "vidjil",
            "biotoolsCURIE": "biotools:vidjil",
            "tool_type": [
                "Web application",
                "Web interface",
                " Command-line"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0804",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1371/journal.pone.0172249"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Support",
                    "email": "contact@vidjil.org",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/vidjil/vidjil",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 128,
            "name": "Tedna",
            "description": "A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.",
            "homepage": "http://urgi.versailles.inra.fr/Tools/Tedna",
            "biotoolsID": "tedna",
            "biotoolsCURIE": "biotools:tedna",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0654",
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_0196"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "urgi-contact@versailles.inra.fr",
                    "url": "https://urgi.versailles.inra.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf",
            "maturity": null,
            "cost": null,
            "unique_visits": 557,
            "citations": null,
            "annual_visits": 1872,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 124,
            "name": "TOGGLE",
            "description": "Toolbox for generic NGS analyses.",
            "homepage": "https://github.com/SouthGreenPlatform/TOGGLE",
            "biotoolsID": "toggle",
            "biotoolsCURIE": "biotools:toggle",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080",
                "http://edamontology.org/topic_3168"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Support",
                    "email": "toggle@ird.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/SouthGreenPlatform/TOGGLE",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:58Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 142,
            "name": "SeaView",
            "description": "Multiplatform graphical user interface designed to facilitate alignment and phylogenic tree building from molecular sequences.",
            "homepage": "http://doua.prabi.fr/software/seaview",
            "biotoolsID": "seaview",
            "biotoolsCURIE": "biotools:seaview",
            "tool_type": [
                "Command-line tool",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0084",
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1093/molbev/msp259"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "IFB ELIXIR-FR",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Manolo Gouy",
                    "email": "mgouy@biomserv.uni-lyon1.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://doua.prabi.fr/main/index",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-25T15:49:59.006607Z",
            "teams": [
                "PRABI-Lyon-Grenoble"
            ],
            "source_repository": null
        },
        {
            "id": 182,
            "name": "S-MART",
            "description": "This tool manages your RNA-Seq and ChIP-seq data.",
            "homepage": "http://urgi.versailles.inra.fr/Tools/S-MART",
            "biotoolsID": "s-mart",
            "biotoolsCURIE": "biotools:s-mart",
            "tool_type": [
                "Suite"
            ],
            "collection": [
                "S-MART"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_3169",
                "http://edamontology.org/topic_0092"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Matthias Zytnicki",
                    "email": "matthias.zytnicki@inra.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://urgi.versailles.inra.fr/download/s-mart/doc.pdf",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": 267,
            "citations": null,
            "annual_visits": 474,
            "last_update": "2024-11-25T14:22:04.089851Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 147,
            "name": "SortMeRNA",
            "description": "Sequence analysis tool for filtering, mapping and OTU-picking NGS reads.",
            "homepage": "https://bioinfo.cristal.univ-lille.fr/RNA/sortmerna/",
            "biotoolsID": "sortmerna",
            "biotoolsCURIE": "biotools:sortmerna",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "ELIXIR Trainer Tools"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/sortmerna/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": null,
                    "url": "https://github.com/biocore/sortmerna/issues",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/sortmerna/sortmerna/wiki/User-manual-v4.3.2",
            "maturity": null,
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:49:42.747317Z",
            "teams": [
                "Bilille"
            ],
            "source_repository": null
        },
        {
            "id": 118,
            "name": "SouthGreen_Galaxy Not found.",
            "description": "A Galaxy instance focused on agriculture, food, biodiversity and environment, from the Agropolis campus in France.",
            "homepage": "http://galaxy.southgreen.fr/galaxy",
            "biotoolsID": "SouthGreen_Galaxy",
            "biotoolsCURIE": "biotools:SouthGreen_Galaxy",
            "tool_type": [
                "Workbench"
            ],
            "collection": [
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": "https://southgreen.fr/content/galaxy-tool",
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-01-24T09:53:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 14,
            "name": "UMD-Predictor",
            "description": "A tool that provides a combinatorial approach to identify potential pathogenic variations, that associates the following data: localization within the protein, conservation, biochemical properties of the mutant and wild-type residues, and the potential impact of the variation on mRNA.",
            "homepage": "http://umd-predictor.eu",
            "biotoolsID": "umd-predictor",
            "biotoolsCURIE": "biotools:umd-predictor",
            "tool_type": [
                "Database portal",
                "Web application"
            ],
            "collection": [
                "Developed_RD-Connect",
                "RD-Connect",
                "Rare Disease",
                "ELIXIR-FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3574",
                "http://edamontology.org/topic_3512",
                "http://edamontology.org/topic_0634",
                "http://edamontology.org/topic_3325",
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0199"
            ],
            "primary_publication": [
                "10.1002/humu.22965"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Christophe Beroud",
                    "email": "christophe.beroud@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "David Salgado",
                    "email": "david.salgado@univ-amu.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Mature",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-07-24T20:06:47Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 5,
            "name": "AgroLD",
            "description": "The RDF Knowledge-based Database for plant molecular networks.",
            "homepage": "http://agrold.southgreen.fr/agrold/",
            "biotoolsID": "AgroLD",
            "biotoolsCURIE": "biotools:AgroLD",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0602",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": null,
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2019-11-05T14:52:28Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 145,
            "name": "MacSyFinder",
            "description": "Program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems to reflect these conserved features, and to allow their efficient detection.",
            "homepage": "https://github.com/gem-pasteur/macsyfinder",
            "biotoolsID": "macsyfinder",
            "biotoolsCURIE": "biotools:macsyfinder",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [
                "GEM Pasteur"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0085"
            ],
            "primary_publication": [
                "10.1371/journal.pone.0110726",
                "10.24072/pcjournal.250"
            ],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Eduardo Rocha",
                    "email": "eduardo.rocha@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Bioinformatics and Biostatistics HUB",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Microbial Evolutionary Genomics Unit",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/team/microbial-evolutionary-genomics/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": "CNRS - UMR 352"
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": "https://research.pasteur.fr/en/member/bertrand-neron/",
                    "orcidid": "https://orcid.org/0000-0002-0220-0482",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Eduardo Rocha",
                    "email": "eduardo.rocha@pasteur.fr",
                    "url": "https://research.pasteur.fr/fr/member/eduardo-rocha/",
                    "orcidid": "https://orcid.org/0000-0001-7704-822X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Bertrand Néron",
                    "email": "bneron@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Sophie Abby",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-5231-3346",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "C3BI",
                    "email": null,
                    "url": "https://research.pasteur.fr/en/center/c3bi/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Institut Pasteur",
                    "email": null,
                    "url": "https://research.pasteur.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-3.0",
            "documentation": "https://macsyfinder.readthedocs.io/en/latest/",
            "maturity": "Mature",
            "cost": null,
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T13:49:36.708539Z",
            "teams": [
                "Pasteur HUB"
            ],
            "source_repository": "https://github.com/gem-pasteur/macsyfinder"
        },
        {
            "id": 170,
            "name": "RNAspace",
            "description": "A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.",
            "homepage": "http://www.rnaspace.org/",
            "biotoolsID": "rnaspace",
            "biotoolsCURIE": "biotools:rnaspace",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0099",
                "http://edamontology.org/topic_0219"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": null,
                    "email": "Marie-Josee.Cros@inra.fr",
                    "url": "http://rnaspace.org/partners",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.rnaspace.org/help/#help1",
            "maturity": null,
            "cost": null,
            "unique_visits": 14318,
            "citations": null,
            "annual_visits": 17558,
            "last_update": "2018-12-10T12:58:50Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 275,
            "name": "IMGT 3Dstructure-DB",
            "description": "IMGT/3Dstructure-DB is the IMGT® database for 3D structures of immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) proteins, related proteins of the immune system (RPI) and fusion proteins for immune applications (FPIA).\nAnnotation is based on the IMGT-ONTOLOGY concepts.",
            "homepage": "http://www.imgt.org/3Dstructure-DB/",
            "biotoolsID": "imgt_3dstructure",
            "biotoolsCURIE": "biotools:imgt_3dstructure",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3948",
                "http://edamontology.org/topic_3930",
                "http://edamontology.org/topic_0154",
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0804"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Marie-Paule Lefranc",
                    "email": "marie-paule.lefranc@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Patrice Duroux",
                    "email": "patrice.duroux@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Sofia Kossida",
                    "email": "sofia.kossida@igh.cnrs.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://www.imgt.org/3Dstructure-DB/doc/IMGT3DstructureDBHelp.shtml",
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:00:15.256998Z",
            "teams": [
                "IMGT"
            ],
            "source_repository": null
        }
    ]
}