Team List
Handles creating, reading and updating teams.
GET /api/team/?format=api&ordering=tools
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It provides the community with various free online tools that can be accessed without prior registration, such as phylogeny.fr and ACDtools. The platform collaborates on genomics and metagenomics projects, providing the main bioinformatics support, particularly for teams at the \"Institut Méditerranéen de Microbiologie de Marseille\". With expertise in analyzing all types of genomes, it focuses in giant viruses.", "expertise": [ "http://edamontology.org/topic_3174", "http://edamontology.org/topic_0196", "http://edamontology.org/topic_3170", "http://edamontology.org/topic_0797", "http://edamontology.org/topic_0622", "http://edamontology.org/topic_0080", "http://edamontology.org/topic_0082", "http://edamontology.org/topic_0781" ], "expertise_description": "PACA Bioinfo's services focus on microbial genomics, metagenomics, comparative genomics, molecular phylogenetics and structural bioinformatics. With expertise in analyzing all types of genomes, it focuses in giant viruses.", "linkCovid19": "", "homepage": "https://www.igs.cnrs-mrs.fr/paca-bioinfo/", "unitId": "UMR7256", "address": "163 Avenue de Luminy\r\nCase 934", "city": "Marseille", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 38, "name": "IGS - Laboratoire Information Génomique et Structurale", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IGS%20-%20Laboratoire%20Information%20G%C3%A9nomique%20et%20Structurale/?format=api" } ], "publications": [ "10.1093/bioinformatics/bty640", "10.1093/bioadv/vbab034", "10.1093/femsml/uqac003", "10.1128/JVI.01997-19", "10.3389/fmicb.2019.00430", "10.1186/s12864-018-4715-9", "10.1080/23802359.2017.1285210", "10.1128/JVI.00230-17", "10.1038/ncomms15087", "10.1038/ismej.2015.192", "10.1111/mec.13621", "10.1073/pnas.1506469112", "10.1371/journal.pone.0090988", "10.1371/journal.pone.0090989", "10.1186/1471-2164-14-158", "10.1111/mec.12108", "10.1038/ismej.2013.116", "10.1074/jbc.M111.314559", "10.1371/journal.pgen.1003122", "10.1186/gb-2012-13-5-r39", "10.1371/journal.pone.0018528", "10.1186/1743-422X-8-99", "10.1105/tpc.110.076406", "10.1186/gb-2009-10-10-r114", "10.1186/1743-422X-6-178", "10.1101/gr.091686.109", "10.1016/j.jip.2009.03.011", "10.1101/gr.091561.109", "10.1186/1471-2164-10-352", "", "10.1093/nar/gkn180" ], "certifications": [ "CATI - CTAI", "RIO", "label Plateforme Aix-Marseille" ], "fundedBy": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [ "Virology", "NGS Data Analysis", "Metagenomics", "Evolution and Phylogeny", "metatranscriptomics", "Sequence analysis", "proteomics", "Comparative genomics", "Structural Bioinformatics" ], "fields": [ "Biomédical", "Environnement", "Biotechnologie" ], "orgid": "05v0fms67", "tools": [ "acdtool", "phylogeny.fr" ], "services": [], "leaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/557/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/372/?format=api" ], "deputies": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/557/?format=api" ], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/372/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/557/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/741/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/557/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/129/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/372/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/502/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/557/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/372/?format=api" ], "ifbMembership": "Associated Team", "platforms": [], "is_active": true, "closing_date": null, "lat": "43.239127", "lng": "5.436787", "updated_at": "2025-12-12T08:59:53.115922Z" }, { "id": 24, "name": "South Green", "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "description": "South Green is a bioinformatics platform dedicated to the genomics of tropical and Mediterranean plants and their associated pathogens. It brings together bioinformaticians from several units and institutes in Montpellier (CIRAD, INRAE, IRD, and the Alliance Bioversity International and CIAT), who have multidisciplinary expertise in data integration, software development, sequencing data analysis, and high-performance computing. The platform has developed strong expertise in building information systems and visualization tools such as Genome Hubs as well as analytical workflow genome analyses (rnaseq, assemby, pangenomics, phylogenomics etc.).", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3474", "http://edamontology.org/topic_0114", "http://edamontology.org/topic_3673", "http://edamontology.org/topic_0194", "http://edamontology.org/topic_3517", "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3050", "http://edamontology.org/topic_3068", "http://edamontology.org/topic_3299", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0092", "http://edamontology.org/topic_3071" ], "expertise_description": "Genomic analysis of plants and their pathogens, including genome assembly, phylogenomics, GWAS, and transcriptomics. We develop reproducible workflows (SnakeMake, Galaxy) and support the management, annotation, and curation of biological data. Experts in the visualization of genomic and pangenomic data.", "linkCovid19": "", "homepage": "http://www.southgreen.fr", "unitId": "", "address": "Parc scientifique Agropolis", "city": "Montpellier", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/DIG-AI/?format=api" ], "affiliatedWith": [], "publications": [ "10.1093/gigascience/giz028", "10.1093/bioadv/vbaf096", "10.1186/s13326-023-00289-5", "10.1371/journal.pcbi.1009321", "", "10.1093/database/baaf048", "10.1371/journal.pcbi.1010622", "10.1186/s13059-023-02911-2", "10.1093/bioinformatics/btab688", "10.1093/hr/uhac221", "10.1093/database/baac057", "10.1186/s12863-025-01359-6", "10.1016/j.cpb.2016.12.002", "10.1186/s44342-025-00058-z", "10.1093/bioinformatics/btac504", "10.1038/s41467-025-56329-4", "10.1016/j.xplc.2022.100330", "10.1016/j.tig.2025.03.004", "10.1002/ppp3.10581", "10.1093/nargab/lqad013", "10.1126/science.add8655", "10.1093/bib/bbab238", 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