Team List
Handles creating, reading and updating teams.
GET /api/team/?format=api&offset=20&ordering=tools
{ "count": 45, "next": "https://catalogue.france-bioinformatique.fr/api/team/?format=api&limit=20&offset=40&ordering=tools", "previous": "https://catalogue.france-bioinformatique.fr/api/team/?format=api&limit=20&ordering=tools", "results": [ { "id": 26, "name": "URGI", "logo_url": "https://entrepot.recherche.data.gouv.fr/logos/14/logoURGI_res300_1-69X1-19.png", "description": "URGI (Unit Resources Genomics-Info) is a scientific facility specialised in plant bioinformatics. \r\nWe publish and integrate genetic, phenomic and genomic data, mainly from plants, and analyse the dynamics of transposable elements in genomes and pangenomes.\r\n\r\nURGI is ISO 9001:2015 certified and part of the “Institut Français de Bioinformatique” (IFB), the French node of ELIXIR, the European bioinformatics infrastructure for the life sciences. It is also one of the four facilities that form BioinfOmics, INRAE’s bioinformatics research infrastructure.", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3571", "http://edamontology.org/topic_3365", "http://edamontology.org/topic_3572", "http://edamontology.org/topic_3299", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0622", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_3489", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091" ], "expertise_description": "Services:\r\n1. Advices and resources for data management and integration, based on the FAIR principles\r\n2. Development of federated portals to facilitate access and exploitation of global data (e.g. FAIDARE, WheatIS Data Discovery, RARe Data Discovery)\r\n3. Advanced analysis of genomic data using specialised tools, such as REPET", "linkCovid19": "", "homepage": "https://urgi.versailles.inrae.fr/", "unitId": "URGI-US1164", "address": "INRAE Centre de Versailles\r\nRD10 - Route de Saint-Cyr\r\n78000 Versailles\r\nFrance", "city": "Versailles", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-CONVERGE/?format=api" ], "affiliatedWith": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" }, { "id": 7, "name": "France Génomique", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/France%20G%C3%A9nomique/?format=api" }, { "id": 67, "name": "University Paris-Saclay", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "publications": [ "10.3835/plantgenome2015.06.0038", "", "10.34133/2019/1671403", "10.1186/s13100-019-0150-y", "10.1007/978-1-4939-6658-5_5", "10.1093/database/bat058", "10.1007/s00239-003-0007-2", "10.1371/journal.pone.0091929", "10.1371/journal.pcbi.0010022", "10.1371/journal.pone.0016526", "10.1186/s13059-018-1491-4" ], "certifications": [ "Label IBiSA", "France-Génomique", "ISO 9001", "CNOC (INRA)", "CATI - CTAI", "PF stratégique nationale INRA" ], "fundedBy": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "keywords": [ "Pangenomic", "Bioinformatics and Plant Genomics", "Web portals", "Transposons", "Interoperability", "Data collection curation", "Data Integration", "Databases and information systems" ], "fields": [ "Biologie", "Agro-alimentaire", "Environnement", "Informatique" ], "orgid": null, "tools": [ "DataDiscovery", "faidare", "gnpis", "", "RARe", "repet", "WheatIS" ], "services": [], "leaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/751/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/754/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/441/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/131/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/336/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/814/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/815/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/816/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/441/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.802130", "lng": "2.087270", "updated_at": "2025-12-09T09:48:11.975324Z" }, { "id": 16, "name": "BiRD", "logo_url": "https://pf-bird.univ-nantes.fr/images/logo/logo.svg", "description": "BiRD brings together life-science and digital-science research laboratories in Nantes. It supports researchers in managing, integrating, analyzing, and modeling experimental data by providing large-scale storage and computing infrastructure, as well as (bio)informatics tools, standardized analysis pipelines, and training. By pooling human resources, expertise, software, and datasets, BiRD aims to strengthen and sustain bio-analysis capabilities, facilitate the analysis and reuse of heterogeneous data, scale up methods developed by partner teams, and contribute to training in life and digital sciences.", "expertise": [], "expertise_description": "BiRD offers expertise in genetics, transcriptomics, single-cell and metagenomic analyses, alongside knowledge-graph development, supporting research in cancer, immunology, cardiovascular and metabolic diseases through advanced bioinformatic workflows and large-scale data processing.", "linkCovid19": "", "homepage": "http://pf-bird.univ-nantes.fr/", "unitId": "", "address": "IRS UN, 8 Quai Moncousu", "city": "Nantes", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 31, "name": "Institut du Thorax", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20du%20Thorax/?format=api" }, { "id": 112, "name": "LS2N", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LS2N/?format=api" } ], "publications": [ "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 114, "name": "Nantes Université", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Nantes%20Universit%C3%A9/?format=api" } ], "keywords": [ "NGS Data Analysis", "Metagenomics", "Metabolic Network Modelling", "Ontologies", "Transcriptomics", "Variant analysis", "Interoperability", "Integration of heterogeneous data", "Knowledge representation", "Workflow development" ], "fields": [ "Biologie", "Biomédical", "Informatique" ], "orgid": null, "tools": [ "3SRP", "DEPIB", "fair-checker", "magneto", "mibiomics", "microSysMics", "pybravo" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/69/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/520/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/69/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/106/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/279/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/520/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "47.209985", "lng": "-1.553544", "updated_at": "2026-01-07T12:57:08.816204Z" }, { "id": 3, "name": "Bilille", "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "description": "Bilille is the Lille bioinformatics and biostatistics platform within the UAR 2014 - US 41 “Plateformes Lilloises en Biologie et Santé”.\r\nBilille is a full member of the French Institute of Bioinformatics and an associated platfom of France Genomique. Bilille is also labelled by the GIS IBiSA.\r\nThe platform's interdisciplinary and diverse expertise in analysing data from the fields of biological, environmental and health research enables it to offer a wide range of services, from consulting to data analysis and/or software development for research projects.\r\nBilille also offers training courses for students, academic and industrial engineers, and researchers, and provides dedicated access to several computing infrastructures in the form of cloud and cluster resources.", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3474", "http://edamontology.org/topic_3173", "http://edamontology.org/topic_3577", "http://edamontology.org/topic_1317", "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3673", "http://edamontology.org/topic_3517", "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3050", "http://edamontology.org/topic_3360", "http://edamontology.org/topic_3382", "http://edamontology.org/topic_3941", "http://edamontology.org/topic_0121", "http://edamontology.org/topic_0160", "http://edamontology.org/topic_0749", "http://edamontology.org/topic_3174", "http://edamontology.org/topic_3125", "http://edamontology.org/topic_3308", "http://edamontology.org/topic_3170", "http://edamontology.org/topic_3169", "http://edamontology.org/topic_0622", "http://edamontology.org/topic_3293", "http://edamontology.org/topic_2269", "http://edamontology.org/topic_0080", "http://edamontology.org/topic_0199", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3172" ], "expertise_description": "Bilille's scientific scope includes in particular: omics data analysis, sequence annotation, phylogeny, systems biology, structural bioinformatics, integrative biology, high content screening data analysis and image data analysis.\r\nExpertise in bioinformatics and biostatistics enables us to handle a variety of projects, from software development to the application of advanced statistical models.", "linkCovid19": "", "homepage": "https://bilille.univ-lille.fr", "unitId": "UAR 2014 - US 41 - PLBS", "address": "Bilille's offices are located across 3 sites in the Lille metropolitan area : \r\n- Bâtiment Plateformes-Cancer, 1 place de Verdun, 59000 Lille\r\n- campus Cité Scientifique, Bâtiment ESPRIT, 59650 Villeneuve d’Ascq\r\n- Institut Pasteur de Lille, Bâtiment E.Roux, 1 rue du Professeur Calmette, 59000 Lille", "city": "Lille", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 113, "name": "Plateformes Lilloises en Biologie et Santé", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Plateformes%20Lilloises%20en%20Biologie%20et%20Sant%C3%A9/?format=api" } ], "publications": [ "", "10.1136/bmjopen-2024-086303", "10.1038/s41591-024-03283-1", "10.1016/j.celrep.2025.115273" ], "certifications": [ "Label IBiSA", "France-Génomique" ], "fundedBy": [ { "id": 68, "name": "Pasteur Institute of Lille", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Pasteur%20Institute%20of%20Lille/?format=api" }, { "id": 66, "name": "University of Lille", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Lille/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 69, "name": "Lille University Hospital", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Lille%20University%20Hospital/?format=api" } ], "keywords": [ "HPC", "Biostatistics", "Epigenetics", "NGS Data Analysis", "Machine learning", "Transcriptomics", "Quantitative proteomics", "Integration of heterogeneous data", "Structural Bioinformatics", "Workflow development" ], "fields": [ "Biologie", "Biomédical", "Environnement", "Informatique" ], "orgid": "056hav897", "tools": [ "carnac", "crac", "dinamo", "NORINE", "sortmerna", "vidjil" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/806/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/838/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/839/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/85/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/840/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/841/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/842/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/843/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/109/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/109/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "50.607558", "lng": "3.126541", "updated_at": "2025-12-30T21:23:55.057898Z" }, { "id": 17, "name": "GenOuest", "logo_url": "https://www.genouest.org/wp-content/uploads/sites/9/2025/12/genouest_small.png", "description": "Hébergé à l'INRIA-IRISA, le centre GenOuest offre un environnement bio-informatique complet avec une infrastructure matérielle et logicielle, des bases de données publiques, des logiciels et des flux de travail, le tout avec le soutien associé. Le portefeuille technologique s'appuie sur plusieurs ressources informatiques, des solutions de gestion de données (BioMAJ). Au cours des années, GenOuest a investi dans le développement d'outils centrés sur les données. Grâce au projet CeSGO, GenOuest propose un ensemble d'outils collaboratifs pour gérer au mieux les projets et les données scientifiques. GenOuest développe des applications bio-informatiques ainsi que la formation et le transfert technologique de nouveaux outils développés par les équipes de recherche de l'Institut.", "expertise": [ "http://edamontology.org/topic_3372", "http://edamontology.org/topic_0605", "http://edamontology.org/topic_3071", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3571" ], "expertise_description": "Gestion FAIR des données et logiciels, environnements d'analyse et de calcul (ligne de commande, cloud, packaging, containers), portail web d'analyse de données Galaxy", "linkCovid19": "", "homepage": "https://www.genouest.org/", "unitId": "UMR6074", "address": "IRISA-INRIA \r\nCampus de Beaulieu\r\n263 avenue du Général Leclerc", "city": "Rennes", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-CONVERGE/?format=api", "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-BIOCONTAINERS/?format=api" ], "affiliatedWith": [ { "id": 75, "name": "Inria Rennes - Bretagne Atlantique Research Centre", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Inria%20Rennes%20-%20Bretagne%20Atlantique%20Research%20Centre/?format=api" }, { "id": 78, "name": "IRISA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRISA/?format=api" } ], "publications": [ "10.3390/IECE-10646", "10.1021/acs.jproteome.0c00904", "10.1186/s12915-020-00820-5", "10.1186/s13059-019-1772-6", "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" }, { "id": 61, "name": "INRIA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRIA/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [ "HPC", "Programming Languages & Computer Sciences", "Cloud", "Biodiversity", "GPU" ], "fields": [ "Biologie", "Biomédical", "Agro-alimentaire", "Environnement", "Biotechnologie" ], "orgid": null, "tools": [ "aphidbase", "askomics", "aureme", "autograph", "biomaj", "commet", "discosnp", "", "germonline", "gatb", "lepidodb", "logol", "mindthegap", "minia", "peppsy", "protomata", "rasta-bacteria", "reprogenomics_viewer" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/805/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/529/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/427/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/497/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.116255", "lng": "-1.638920", "updated_at": "2025-12-09T09:59:51.778066Z" }, { "id": 31, "name": "AuBi", "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg", "description": "AuBi is the bioinformatics platform of Clermont Auvergne University for life sciences (fundamental biology, microbiology, agronomy, environment, health and epidemiology). AuBi relies on the UCA Mesocentre to promote access to IT facilities for data analysis, storage, bioinformatics training and web service hosting for research. Significant expertise has been developed to support scientific projects in the field of large-scale sequence analysis in genomics, transcriptomics (RNAseq, ChiPseq, etc.) and epigenomic variations (BSseq), metagenomics, metatranscriptomics, metabolomics, molecular dynamics and imaging.", "expertise": [ "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3307", "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3383", "http://edamontology.org/topic_0091" ], "expertise_description": "AuBi provides bioinformatics tools and resources based on HPC and Cloud infrastructures with focus on omics and imaging data storage and analysis.", "linkCovid19": "", "homepage": "https://mesocentre.uca.fr/projets-associes/plateforme-aubi/", "unitId": "", "address": "Plateforme AuBi\r\nMésocentre Clermont Auvergne\r\nUniversité Clermont Auvergne\r\n7, avenue Blaise Pascal\r\nTSA 60026", "city": "Aubière cedex", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "publications": [ "DOI:10.1111/1462-2920.70166", "DOI:10.1186/s40168-025-02062-5", "DOI:10.1016/j.compmedimag.2025.102546", "DOI:10.1186/s40168-024-02027-0", "DOI:10.5194/bg-22-1257-2025", "DOI:10.3390/jof11070543", "" ], "certifications": [], "fundedBy": [ { "id": 94, "name": "University Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Clermont%20Auvergne/?format=api" } ], "keywords": [ "Shiny", "Programming Languages & Computer Sciences", "Cloud", "Bioimaging", "FAIR", "Reproducibility", "Bioinformatics", "High performance computing", "Galaxy", "OMERO" ], "fields": [ "Biologie", "Biomédical", "Agro-alimentaire", "Environnement" ], "orgid": null, "tools": [ "dropnet", "metabocloud", "nucleusj", "PanGeneHome" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/493/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/401/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/252/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/75/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/81/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/98/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/503/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/64/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/99/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/121/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/214/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/216/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/235/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/166/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/267/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/278/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/317/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/343/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/435/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/493/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/494/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/522/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/525/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/554/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/633/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "45.758543", "lng": "3.088984", "updated_at": "2025-12-09T09:59:55.854091Z" }, { "id": 10, "name": "MIGALE", "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "description": "The Migale bioinformatics platform is a team within the INRAe MaIAGE (Applied Mathematics and Computer Science, from the Genome to the Environment) research unit. Since 2003, it has been providing four types of services to the life sciences community: an open infrastructure dedicated to the analysis of life sciences data , the dissemination of expertise in bioinformatics (annual training session “Bioinformatics through practice”), the design and development of bioinformatics applications (genome browser, databases), and the analysis of data in genomics, metagenomics, and metatranscriptomics.", "expertise": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_2269", "http://edamontology.org/topic_3301", "http://edamontology.org/topic_0797", "http://edamontology.org/topic_3174" ], "expertise_description": "The Migale bioinformatics platform provides access to a computing infrastructure for bioinformatics and biostatistics. Migale organizes an annual training cycle in bioinformatics through practice. It also supports the community in its research projects by providing expertise in the development of bioinformatics tools and the analysis of genomic or metagenomic data.", "linkCovid19": "", "homepage": "https://migale.inrae.fr", "unitId": "UR1404", "address": "Domaine de Vilvert\r\nUnité MaIAGE", "city": "Jouy-en-Josas", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 24, "name": "MaIAGE - Applied Mathematics and Computer Science from Genomes to the Environment", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MaIAGE%20-%20Applied%20Mathematics%20and%20Computer%20Science%20from%20Genomes%20to%20the%20Environment/?format=api" } ], "publications": [ "10.3389/fimmu.2021.745535", "10.3389/fimmu.2021.742584", "10.1016/j.biortech.2021.126612", "10.3390/nu13113865", "10.1158/1055-9965.epi-21-0188", "10.1128/msystems.00558-21", "10.1038/s41598-021-96967-4", "10.1101/2021.08.18.456644", "10.1038/s41541-021-00351-2", "10.1007/978-1-0716-1641-3_11", "10.1016/j.jenvman.2021.112631", "", "10.1093/bib/bbab318" ], "certifications": [ "Label IBiSA", "France-Génomique", "ISO 9001", "CNOC (INRA)", "CATI - CTAI", "PF stratégique nationale INRA", "RIO" ], "fundedBy": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "keywords": [ "Biostatistics", "NGS Data Analysis", "Metagenomics", "Microbiomes", "Genome analysis", "Comparative genomics" ], "fields": [ "Biologie", "Agro-alimentaire", "Environnement", "Biotechnologie", "Informatique" ], "orgid": "05qdnns64", "tools": [ "easy16s", "frogs", "gpcrautomodel", "show", "vast" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/422/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/744/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/854/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/855/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/630/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/422/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/744/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/630/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.763439", "lng": "2.171437", "updated_at": "2025-12-11T15:26:42.421357Z" }, { "id": 11, "name": "Pasteur HUB", "logo_url": "https://hub-portal.pasteur.cloud/logo-hub.png", "description": "Le centre de bioinformatique et de biostatistique est la partie service du département de biologie informatique. L’équipe du Hub comprend 50 experts en biostatistique et en bioinformatique. Créé en 2015, le C3BI comprend cinq unités de recherche en biologie computationnelle et le Hub de bioinformatique et biostatistique. La mission du centre est de développer la recherche méthodologique en bioinformatique et biostatistique, de donner une visibilité internationale à l'Institut Pasteur dans ce domaine, d'offrir un soutien aux unités de recherche expérimentale, et de développer les compétences informatiques et analytiques du campus. Les activités de la plateforme comprennent la participation à des projets de recherche et d'analyse, des missions sur le terrain au sein des unités et des plateformes du campus, des sessions de formation et d'enseignement ouvertes à nos partenaires, et fournissent un certain nombre de ressources à la communauté nationale et internationale. L’équipe du Hub et l’ensemble du département ont une longue expérience dans le développement de sites web (par exemple NGPhylogeny.fr), les calculs intensifs et la gestion des données de santé.", "expertise": [ "http://edamontology.org/topic_3372" ], "expertise_description": "", "linkCovid19": "", "homepage": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/", "unitId": "", "address": "25 Rue du Dr Roux", "city": "Paris", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 48, "name": "Institut Pasteur", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api" } ], "publications": [ "10.21105/joss.00698", "10.1093/bioinformatics/btab070", "" ], "certifications": [], "fundedBy": [ { "id": 48, "name": "Institut Pasteur", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api" } ], "keywords": [], "fields": [ "Biologie", "Biomédical" ], "orgid": null, "tools": [ "edam-browser", "fqtools", "macsyfinder", "memhdx", "sartools", "shaman", "syntview", "VHRdb" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/251/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/461/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/73/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/184/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/408/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/414/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/379/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/73/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.840351", "lng": "2.310813", "updated_at": "2025-10-21T13:07:13.054323Z" }, { "id": 29, "name": "IFB Core", "logo_url": "https://www.ifb-elixir.fr/wp-content/uploads/2025/08/logo-ifb-elixir.png", "description": "The mission of the IFB-Core platform is to coordinate the use of resources and activities within the national infrastructure. IFB-Core also acts as the point of contact for the ELIXIR network, of which IFB is the French node (ELIXIR-FR). The IFB-core UAR serves as an interface with various stakeholders in order to set up and administer a multi-site national IT infrastructure (National Network of Computing Resources, NNCR) aimed at pooling resources and bringing together life science communities around tools tailored to their needs.", "expertise": [], "expertise_description": "IFB-core provides scientific, technical and administrative coordination for the infrastructure. The unit manages the administrative requirements of IFB/ELIXIR-FR, coordinates the national network of bioinformatics computing and storage infrastructures, structures the pooling of tools, services and training for the community, and represents France within ELIXIR.", "linkCovid19": "", "homepage": "https://www.ifb-elixir.fr/", "unitId": "UAR_3601", "address": "IFB-core\r\n7 rue Guy Moquet", "city": "Villejuif", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 62, "name": "CEA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CEA/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "publications": [ "" ], "certifications": [], "fundedBy": [ { "id": 62, "name": "CEA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CEA/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [ "HPC", "Cloud Computing" ], "fields": [], "orgid": null, "tools": [ "edam-browser", "fair-checker", "galaxy_france" ], "services": [], "leaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/785/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/624/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/782/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/243/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/660/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/785/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/82/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/788/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/625/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/789/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/790/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/791/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/792/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/793/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/794/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/795/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/796/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/624/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/43/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/59/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/128/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/107/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/431/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/489/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/797/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/811/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api" ], "ifbMembership": "Coordinating unit", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.796758", "lng": "2.358473", "updated_at": "2025-12-09T13:59:38.581575Z" }, { "id": 17, "name": "GenOuest", "logo_url": "https://www.genouest.org/wp-content/uploads/sites/9/2025/12/genouest_small.png", "description": "Hébergé à l'INRIA-IRISA, le centre GenOuest offre un environnement bio-informatique complet avec une infrastructure matérielle et logicielle, des bases de données publiques, des logiciels et des flux de travail, le tout avec le soutien associé. Le portefeuille technologique s'appuie sur plusieurs ressources informatiques, des solutions de gestion de données (BioMAJ). Au cours des années, GenOuest a investi dans le développement d'outils centrés sur les données. Grâce au projet CeSGO, GenOuest propose un ensemble d'outils collaboratifs pour gérer au mieux les projets et les données scientifiques. GenOuest développe des applications bio-informatiques ainsi que la formation et le transfert technologique de nouveaux outils développés par les équipes de recherche de l'Institut.", "expertise": [ "http://edamontology.org/topic_3372", "http://edamontology.org/topic_0605", "http://edamontology.org/topic_3071", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3571" ], "expertise_description": "Gestion FAIR des données et logiciels, environnements d'analyse et de calcul (ligne de commande, cloud, packaging, containers), portail web d'analyse de données Galaxy", "linkCovid19": "", "homepage": "https://www.genouest.org/", "unitId": "UMR6074", "address": "IRISA-INRIA \r\nCampus de Beaulieu\r\n263 avenue du Général Leclerc", "city": "Rennes", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-CONVERGE/?format=api", "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-BIOCONTAINERS/?format=api" ], "affiliatedWith": [ { "id": 75, "name": "Inria Rennes - Bretagne Atlantique Research Centre", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Inria%20Rennes%20-%20Bretagne%20Atlantique%20Research%20Centre/?format=api" }, { "id": 78, "name": "IRISA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRISA/?format=api" } ], "publications": [ "10.3390/IECE-10646", "10.1021/acs.jproteome.0c00904", "10.1186/s12915-020-00820-5", "10.1186/s13059-019-1772-6", "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" }, { "id": 61, "name": "INRIA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRIA/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [ "HPC", "Programming Languages & Computer Sciences", "Cloud", "Biodiversity", "GPU" ], "fields": [ "Biologie", "Biomédical", "Agro-alimentaire", "Environnement", "Biotechnologie" ], "orgid": null, "tools": [ "aphidbase", "askomics", "aureme", "autograph", "biomaj", "commet", "discosnp", "", "germonline", "gatb", "lepidodb", "logol", "mindthegap", "minia", "peppsy", "protomata", "rasta-bacteria", "reprogenomics_viewer" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/805/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/529/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/427/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/497/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.116255", "lng": "-1.638920", "updated_at": "2025-12-09T09:59:51.778066Z" }, { "id": 1, "name": "EBIO", "logo_url": null, "description": "La plateforme Bioinformatique eBio (http://ebio.u-psud.fr/) créée en décembre 2009, est au centre du dispositif de bioinformatique de l’Université Paris-Sud. Elle est associée aux services de bioinformatiques de l’INRA Moulon, de l’hôpital Paul Brousse et de Gustave Roussy. eBio est labellisée par IBISA/Reseau National des Plateformes Bioinformatiques (RENABI) et membre de l’Alliance des Plateformes Bioinformatiques d’Ile de France (APLIBIO). Le site principal de eBio est localisé au bat 400 de l'Université Paris–Sud et intégré à l'I2BC (UMR9198, Gif sur Yvette).\r\nLes missions d’eBio comprennent : (1) le soutien bioinformatique aux projets de recherche, (2) la mise à disposition de moyens de calcul et stockage, (3) le développement et la maintenance de serveurs web de bioinformatique et bases de données de génomique. La plateforme a accompagné ou hébergé plus de 50 projets de recherche depuis début 2010.\r\nLes principaux domaines d’expertise de la plateforme sont les suivants :\r\n- L’analyse de données RNA-seq, notamment la detection de transcrits non codants, transcrits alternatifs, l’analyse d’expression différentielle, le ribosome profiling\r\n- L’analyse des structures d’ARN (alignement, structure secondaire)\r\n- L’intégration de logiciels et de workflows d’analyse sous Galaxy\r\n- L’assemblage des génomes de bactéries/champignons, la détection de variants\r\n- La phylogénie moléculaire et l’analyse fonctionnelle par profil phylogénétique\r\n- L’annotation des génomes de bactéries, archées et champignons (séquences CRISPR, terminateurs de transcription, ARN régulateurs, minisatellites)\r\n- Le calcul distribué et sur cloud (déploiement de services d’analyse sur cluster et cloud académique)", "expertise": [], "expertise_description": "", "linkCovid19": "", "homepage": "http://ebio.u-psud.fr/", "unitId": "", "address": "15 rue George Clémenceau\r\n91000 Orsay\r\nFrance", "city": "Orsay", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "publications": [ "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [], "fields": [ "Biologie", "Biomédical", "Agro-alimentaire", "Environnement" ], "orgid": null, "tools": [ "crisprfinder", "erpin", "synttax" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/244/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/244/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=api" ], "maintainers": [], "ifbMembership": "None", "platforms": [], "is_active": false, "closing_date": "2023-03-15", "lat": "48.698931", "lng": "2.177998", "updated_at": "2025-10-21T13:07:13.141581Z" }, { "id": 26, "name": "URGI", "logo_url": "https://entrepot.recherche.data.gouv.fr/logos/14/logoURGI_res300_1-69X1-19.png", "description": "URGI (Unit Resources Genomics-Info) is a scientific facility specialised in plant bioinformatics. \r\nWe publish and integrate genetic, phenomic and genomic data, mainly from plants, and analyse the dynamics of transposable elements in genomes and pangenomes.\r\n\r\nURGI is ISO 9001:2015 certified and part of the “Institut Français de Bioinformatique” (IFB), the French node of ELIXIR, the European bioinformatics infrastructure for the life sciences. It is also one of the four facilities that form BioinfOmics, INRAE’s bioinformatics research infrastructure.", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3571", "http://edamontology.org/topic_3365", "http://edamontology.org/topic_3572", "http://edamontology.org/topic_3299", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0622", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_3489", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091" ], "expertise_description": "Services:\r\n1. Advices and resources for data management and integration, based on the FAIR principles\r\n2. Development of federated portals to facilitate access and exploitation of global data (e.g. FAIDARE, WheatIS Data Discovery, RARe Data Discovery)\r\n3. Advanced analysis of genomic data using specialised tools, such as REPET", "linkCovid19": "", "homepage": "https://urgi.versailles.inrae.fr/", "unitId": "URGI-US1164", "address": "INRAE Centre de Versailles\r\nRD10 - Route de Saint-Cyr\r\n78000 Versailles\r\nFrance", "city": "Versailles", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/ELIXIR-CONVERGE/?format=api" ], "affiliatedWith": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" }, { "id": 7, "name": "France Génomique", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/France%20G%C3%A9nomique/?format=api" }, { "id": 67, "name": "University Paris-Saclay", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "publications": [ "10.3835/plantgenome2015.06.0038", "", "10.34133/2019/1671403", "10.1186/s13100-019-0150-y", "10.1007/978-1-4939-6658-5_5", "10.1093/database/bat058", "10.1007/s00239-003-0007-2", "10.1371/journal.pone.0091929", "10.1371/journal.pcbi.0010022", "10.1371/journal.pone.0016526", "10.1186/s13059-018-1491-4" ], "certifications": [ "Label IBiSA", "France-Génomique", "ISO 9001", "CNOC (INRA)", "CATI - CTAI", "PF stratégique nationale INRA" ], "fundedBy": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "keywords": [ "Pangenomic", "Bioinformatics and Plant Genomics", "Web portals", "Transposons", "Interoperability", "Data collection curation", "Data Integration", "Databases and information systems" ], "fields": [ "Biologie", "Agro-alimentaire", "Environnement", "Informatique" ], "orgid": null, "tools": [ "DataDiscovery", "faidare", "gnpis", "", "RARe", "repet", "WheatIS" ], "services": [], "leaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/751/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/754/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/441/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/131/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/336/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/814/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/815/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/816/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/441/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.802130", "lng": "2.087270", "updated_at": "2025-12-09T09:48:11.975324Z" }, { "id": 29, "name": "IFB Core", "logo_url": "https://www.ifb-elixir.fr/wp-content/uploads/2025/08/logo-ifb-elixir.png", "description": "The mission of the IFB-Core platform is to coordinate the use of resources and activities within the national infrastructure. IFB-Core also acts as the point of contact for the ELIXIR network, of which IFB is the French node (ELIXIR-FR). The IFB-core UAR serves as an interface with various stakeholders in order to set up and administer a multi-site national IT infrastructure (National Network of Computing Resources, NNCR) aimed at pooling resources and bringing together life science communities around tools tailored to their needs.", "expertise": [], "expertise_description": "IFB-core provides scientific, technical and administrative coordination for the infrastructure. The unit manages the administrative requirements of IFB/ELIXIR-FR, coordinates the national network of bioinformatics computing and storage infrastructures, structures the pooling of tools, services and training for the community, and represents France within ELIXIR.", "linkCovid19": "", "homepage": "https://www.ifb-elixir.fr/", "unitId": "UAR_3601", "address": "IFB-core\r\n7 rue Guy Moquet", "city": "Villejuif", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 62, "name": "CEA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CEA/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "publications": [ "" ], "certifications": [], "fundedBy": [ { "id": 62, "name": "CEA", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CEA/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "keywords": [ "HPC", "Cloud Computing" ], "fields": [], "orgid": null, "tools": [ "edam-browser", "fair-checker", "galaxy_france" ], "services": [], "leaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/785/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/624/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/782/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/243/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/660/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/785/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/77/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/82/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/788/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/625/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/789/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/790/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/791/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/792/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/793/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/794/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/795/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/796/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/624/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/43/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/59/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/128/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/107/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/431/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/489/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/797/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/811/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api" ], "ifbMembership": "Coordinating unit", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.796758", "lng": "2.358473", "updated_at": "2025-12-09T13:59:38.581575Z" }, { "id": 16, "name": "BiRD", "logo_url": "https://pf-bird.univ-nantes.fr/images/logo/logo.svg", "description": "BiRD brings together life-science and digital-science research laboratories in Nantes. It supports researchers in managing, integrating, analyzing, and modeling experimental data by providing large-scale storage and computing infrastructure, as well as (bio)informatics tools, standardized analysis pipelines, and training. By pooling human resources, expertise, software, and datasets, BiRD aims to strengthen and sustain bio-analysis capabilities, facilitate the analysis and reuse of heterogeneous data, scale up methods developed by partner teams, and contribute to training in life and digital sciences.", "expertise": [], "expertise_description": "BiRD offers expertise in genetics, transcriptomics, single-cell and metagenomic analyses, alongside knowledge-graph development, supporting research in cancer, immunology, cardiovascular and metabolic diseases through advanced bioinformatic workflows and large-scale data processing.", "linkCovid19": "", "homepage": "http://pf-bird.univ-nantes.fr/", "unitId": "", "address": "IRS UN, 8 Quai Moncousu", "city": "Nantes", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 31, "name": "Institut du Thorax", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20du%20Thorax/?format=api" }, { "id": 112, "name": "LS2N", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LS2N/?format=api" } ], "publications": [ "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 114, "name": "Nantes Université", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Nantes%20Universit%C3%A9/?format=api" } ], "keywords": [ "NGS Data Analysis", "Metagenomics", "Metabolic Network Modelling", "Ontologies", "Transcriptomics", "Variant analysis", "Interoperability", "Integration of heterogeneous data", "Knowledge representation", "Workflow development" ], "fields": [ "Biologie", "Biomédical", "Informatique" ], "orgid": null, "tools": [ "3SRP", "DEPIB", "fair-checker", "magneto", "mibiomics", "microSysMics", "pybravo" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/69/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/520/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/69/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/106/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/279/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/520/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "47.209985", "lng": "-1.553544", "updated_at": "2026-01-07T12:57:08.816204Z" }, { "id": 7, "name": "ATGC", "logo_url": "https://www.lirmm.fr/wp-content/uploads/sites/3/2025/11/ATGClogo_LIRMM-300x105-1.jpg", "description": "The bioinformatics platform ATGC is supported by a research team from LIRMM. It has the triple vocation of disseminating the bioinformatics tools developed within the Montpellier community, of encouraging collaborations between computer scientists and biologists, and of providing assistance to these researchers by setting up bioinformatics services directly related to their work. The tools it offers are accessible online free of charge. They can be downloaded and/or run on Cluster IO from Montpellier Mésocentre (ISDM). A major axis of the platform concerns evolutionary studies.", "expertise": [ "http://edamontology.org/topic_3372" ], "expertise_description": "The ATGC platform aims to braodcast the software systems developed by MAB Team from LIRMM.\r\nThe MAB team (Methods and Algorithms for Bioinformatics) proposes mathematical and algorithmic methods (text and tree algorithms, combinatorial algorithms and optimization, probabilistic modeling, statistical machine learning) to address biological issues such as evolution, phylogeny, comparative genomics", "linkCovid19": "", "homepage": "http://www.atgc-montpellier.fr/", "unitId": "UMR5506", "address": "860 rue Saint Priest", "city": "Montpellier", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 73, "name": "LIRMM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LIRMM/?format=api" } ], "publications": [ "10.1007/978-3-642-00982-2_60", "10.1186/1471-2105-9-166", "10.1093/sysbio/syq002", "10.1093/oxfordjournals.molbev.a025808", "10.1080/10635150390235520", "10.1093/nar/gki352", "10.1093/bioinformatics/bti713", "10.1080/10635150600755453", "10.1080/10635150701639754", "10.1093/molbev/msn067", "10.1098/rstb.2008.0180", "10.1186/1471-2105-9-413", "10.1080/10635150600969872", "", "10.1093/sysbio/syq010", "10.1093/nar/gkn180" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 99, "name": "University of Montpellier", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Montpellier/?format=api" } ], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Text mining", "Structural genomics" ], "fields": [ "Biologie", "Biomédical", "Agro-alimentaire", "Environnement", "Biotechnologie" ], "orgid": null, "tools": [ "bionj", "compphy", "crac", "fastme", "lordec", "mpscan", "phylogeny.fr", "phyml" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/282/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/830/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/50/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/76/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/108/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/118/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/282/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/411/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/480/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/585/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/443/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/830/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "43.636878", "lng": "3.841811", "updated_at": "2025-11-27T13:24:55.215918Z" }, { "id": 38, "name": "PB-IBENS", "logo_url": "https://www.ibens.bio.ens.psl.eu/squelettes/img/IBENS_logo.png", "description": "The Plateforme Bioinformatique (PB-IBENS) is a facility of the Institut de Biologie de l’ENS (IBENS). It defines, develops and deploys the hardware and software resources that meet the specific bioinformatics needs of researchers. It is responsible for the maintenance and deployment of the computing cluster “BioClust” accessible to all partners of the LABEX Memolife (IBENS, ESPCI, Collège de France). PB-IBENS also maintains and supports online tools (web and database servers) developed by the IBENS teams, some of which are labeled by the European Infrastructure Elixir. It is involved in bioinformatics training at the ENS, organises seminars and participates to external courses.", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3489" ], "expertise_description": "Work in Progress", "linkCovid19": "", "homepage": "https://www.ibens.ens.fr/?rubrique55", "unitId": "UMR8197", "address": "Plateforme Bioinformatique- IBENS\r\nUMR8197-U1024\r\n46 rue d’Ulm", "city": "PARIS", "country": "FRANCE", "communities": [], "projects": [], "affiliatedWith": [], "publications": [ "", "10.1093/nar/gkab1091" ], "certifications": [], "fundedBy": [ { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 90, "name": "IBENS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IBENS/?format=api" }, { "id": 111, "name": "Ecole normale supérieure", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Ecole%20normale%20sup%C3%A9rieure/?format=api" } ], "keywords": [ "Phylogeny", "Programming Languages & Computer Sciences", "Paleogenomics and ancestral genomes", "High performance computing", "Graphical analysis", "Comparative genomics" ], "fields": [ "Biologie", "Informatique" ], "orgid": "grid.462036.5", "tools": [ "finsurf", "GENOMICUS", "Genomicus-fungi", "Genomicus-metazoa", "Genomicus-Plants", "Genomicus-protists" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/533/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/758/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/647/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/647/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/647/?format=api" ], "ifbMembership": "Contributing platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.858608", "lng": "2.312949", "updated_at": "2025-12-09T12:25:14.658983Z" }, { "id": 12, "name": "RPBS", "logo_url": "https://bioserv.rpbs.univ-paris-diderot.fr/static/img/logo_RPBS.png", "description": "RPBS est une plateforme dédiée à la bio-informatique structurelle. Elle propose : le développement de méthodes/protocoles de bio-informatique structurelle, l'hébergement de services et le déploiement en ligne de services du domaine, la formation et conseil dans le domaine et l’hébergement de calculs via PAAS.", "expertise": [], "expertise_description": "", "linkCovid19": "", "homepage": "http://bioserv.rpbs.univ-paris-diderot.fr/index.html", "unitId": "", "address": "35 rue Hélène Brion", "city": "Paris", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 28, "name": "University Paris-Cité", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Cit%C3%A9/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" } ], "publications": [ "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 28, "name": "University Paris-Cité", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Cit%C3%A9/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" } ], "keywords": [], "fields": [ "Biologie", "Biomédical", "Informatique" ], "orgid": null, "tools": [ "fpocket", "frog2", "hca", "hhalign-kbest", "interevdock2", "pep-fold", "pep-sitefinder", "sabbac" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/801/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/802/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/801/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/802/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/120/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/583/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/617/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/638/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.827664", "lng": "2.380355", "updated_at": "2025-10-21T13:07:13.178118Z" }, { "id": 11, "name": "Pasteur HUB", "logo_url": "https://hub-portal.pasteur.cloud/logo-hub.png", "description": "Le centre de bioinformatique et de biostatistique est la partie service du département de biologie informatique. L’équipe du Hub comprend 50 experts en biostatistique et en bioinformatique. Créé en 2015, le C3BI comprend cinq unités de recherche en biologie computationnelle et le Hub de bioinformatique et biostatistique. La mission du centre est de développer la recherche méthodologique en bioinformatique et biostatistique, de donner une visibilité internationale à l'Institut Pasteur dans ce domaine, d'offrir un soutien aux unités de recherche expérimentale, et de développer les compétences informatiques et analytiques du campus. Les activités de la plateforme comprennent la participation à des projets de recherche et d'analyse, des missions sur le terrain au sein des unités et des plateformes du campus, des sessions de formation et d'enseignement ouvertes à nos partenaires, et fournissent un certain nombre de ressources à la communauté nationale et internationale. L’équipe du Hub et l’ensemble du département ont une longue expérience dans le développement de sites web (par exemple NGPhylogeny.fr), les calculs intensifs et la gestion des données de santé.", "expertise": [ "http://edamontology.org/topic_3372" ], "expertise_description": "", "linkCovid19": "", "homepage": "https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/", "unitId": "", "address": "25 Rue du Dr Roux", "city": "Paris", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 48, "name": "Institut Pasteur", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api" } ], "publications": [ "10.21105/joss.00698", "10.1093/bioinformatics/btab070", "" ], "certifications": [], "fundedBy": [ { "id": 48, "name": "Institut Pasteur", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api" } ], "keywords": [], "fields": [ "Biologie", "Biomédical" ], "orgid": null, "tools": [ "edam-browser", "fqtools", "macsyfinder", "memhdx", "sartools", "shaman", "syntview", "VHRdb" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/251/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/461/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/73/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/184/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/408/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/414/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/379/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/432/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/73/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.840351", "lng": "2.310813", "updated_at": "2025-10-21T13:07:13.054323Z" }, { "id": 12, "name": "RPBS", "logo_url": "https://bioserv.rpbs.univ-paris-diderot.fr/static/img/logo_RPBS.png", "description": "RPBS est une plateforme dédiée à la bio-informatique structurelle. Elle propose : le développement de méthodes/protocoles de bio-informatique structurelle, l'hébergement de services et le déploiement en ligne de services du domaine, la formation et conseil dans le domaine et l’hébergement de calculs via PAAS.", "expertise": [], "expertise_description": "", "linkCovid19": "", "homepage": "http://bioserv.rpbs.univ-paris-diderot.fr/index.html", "unitId": "", "address": "35 rue Hélène Brion", "city": "Paris", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 28, "name": "University Paris-Cité", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Cit%C3%A9/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" } ], "publications": [ "" ], "certifications": [ "Label IBiSA" ], "fundedBy": [ { "id": 28, "name": "University Paris-Cité", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Cit%C3%A9/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" } ], "keywords": [], "fields": [ "Biologie", "Biomédical", "Informatique" ], "orgid": null, "tools": [ "fpocket", "frog2", "hca", "hhalign-kbest", "interevdock2", "pep-fold", "pep-sitefinder", "sabbac" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/801/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/802/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/801/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/802/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/120/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/583/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/617/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/638/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/523/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.827664", "lng": "2.380355", "updated_at": "2025-10-21T13:07:13.178118Z" }, { "id": 10, "name": "MIGALE", "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "description": "The Migale bioinformatics platform is a team within the INRAe MaIAGE (Applied Mathematics and Computer Science, from the Genome to the Environment) research unit. Since 2003, it has been providing four types of services to the life sciences community: an open infrastructure dedicated to the analysis of life sciences data , the dissemination of expertise in bioinformatics (annual training session “Bioinformatics through practice”), the design and development of bioinformatics applications (genome browser, databases), and the analysis of data in genomics, metagenomics, and metatranscriptomics.", "expertise": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_2269", "http://edamontology.org/topic_3301", "http://edamontology.org/topic_0797", "http://edamontology.org/topic_3174" ], "expertise_description": "The Migale bioinformatics platform provides access to a computing infrastructure for bioinformatics and biostatistics. Migale organizes an annual training cycle in bioinformatics through practice. It also supports the community in its research projects by providing expertise in the development of bioinformatics tools and the analysis of genomic or metagenomic data.", "linkCovid19": "", "homepage": "https://migale.inrae.fr", "unitId": "UR1404", "address": "Domaine de Vilvert\r\nUnité MaIAGE", "city": "Jouy-en-Josas", "country": "France", "communities": [], "projects": [], "affiliatedWith": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 24, "name": "MaIAGE - Applied Mathematics and Computer Science from Genomes to the Environment", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MaIAGE%20-%20Applied%20Mathematics%20and%20Computer%20Science%20from%20Genomes%20to%20the%20Environment/?format=api" } ], "publications": [ "10.3389/fimmu.2021.745535", "10.3389/fimmu.2021.742584", "10.1016/j.biortech.2021.126612", "10.3390/nu13113865", "10.1158/1055-9965.epi-21-0188", "10.1128/msystems.00558-21", "10.1038/s41598-021-96967-4", "10.1101/2021.08.18.456644", "10.1038/s41541-021-00351-2", "10.1007/978-1-0716-1641-3_11", "10.1016/j.jenvman.2021.112631", "", "10.1093/bib/bbab318" ], "certifications": [ "Label IBiSA", "France-Génomique", "ISO 9001", "CNOC (INRA)", "CATI - CTAI", "PF stratégique nationale INRA", "RIO" ], "fundedBy": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "keywords": [ "Biostatistics", "NGS Data Analysis", "Metagenomics", "Microbiomes", "Genome analysis", "Comparative genomics" ], "fields": [ "Biologie", "Agro-alimentaire", "Environnement", "Biotechnologie", "Informatique" ], "orgid": "05qdnns64", "tools": [ "easy16s", "frogs", "gpcrautomodel", "show", "vast" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/422/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/744/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/854/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/855/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/630/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/561/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/422/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/744/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/630/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "48.763439", "lng": "2.171437", "updated_at": "2025-12-11T15:26:42.421357Z" }, { "id": 24, "name": "South Green", "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "description": "South Green is a bioinformatics platform dedicated to the genomics of tropical and Mediterranean plants and their associated pathogens. It brings together bioinformaticians from several units and institutes in Montpellier (CIRAD, INRAE, IRD, and the Alliance Bioversity International and CIAT), who have multidisciplinary expertise in data integration, software development, sequencing data analysis, and high-performance computing. The platform has developed strong expertise in building information systems and visualization tools such as Genome Hubs as well as analytical workflow genome analyses (rnaseq, assemby, pangenomics, phylogenomics etc.).", "expertise": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_3474", "http://edamontology.org/topic_0114", "http://edamontology.org/topic_3673", "http://edamontology.org/topic_0194", "http://edamontology.org/topic_3517", "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3050", "http://edamontology.org/topic_3068", "http://edamontology.org/topic_3299", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0092", "http://edamontology.org/topic_3071" ], "expertise_description": "Genomic analysis of plants and their pathogens, including genome assembly, phylogenomics, GWAS, and transcriptomics. We develop reproducible workflows (SnakeMake, Galaxy) and support the management, annotation, and curation of biological data. Experts in the visualization of genomic and pangenomic data.", "linkCovid19": "", "homepage": "http://www.southgreen.fr", "unitId": "", "address": "Parc scientifique Agropolis", "city": "Montpellier", "country": "France", "communities": [], "projects": [ "https://catalogue.france-bioinformatique.fr/api/project/DIG-AI/?format=api" ], "affiliatedWith": [], "publications": [ "10.1093/gigascience/giz028", "10.1093/bioadv/vbaf096", "10.1186/s13326-023-00289-5", "10.1371/journal.pcbi.1009321", "", "10.1093/database/baaf048", "10.1371/journal.pcbi.1010622", "10.1186/s13059-023-02911-2", "10.1093/bioinformatics/btab688", "10.1093/hr/uhac221", "10.1093/database/baac057", "10.1186/s12863-025-01359-6", "10.1016/j.cpb.2016.12.002", "10.1186/s44342-025-00058-z", "10.1093/bioinformatics/btac504", "10.1038/s41467-025-56329-4", "10.1016/j.xplc.2022.100330", "10.1016/j.tig.2025.03.004", "10.1002/ppp3.10581", "10.1093/nargab/lqad013", "10.1126/science.add8655", "10.1093/bib/bbab238", "10.1093/nar/gkab564", "10.1093/gigascience/giz051", "10.24072/pcjournal.153", "10.1111/tpj.15456", "10.1093/nargab/lqab088", "10.1002/9781119312994.apr0664", "10.1371/journal.pbio.3000312", "10.1093/aob/mcab008", "10.1038/s42003-020-01593-x" ], "certifications": [ "ISO 9001" ], "fundedBy": [ { "id": 86, "name": "the Alliance of Bioversity International and CIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/the%20Alliance%20of%20Bioversity%20International%20and%20CIAT/?format=api" }, { "id": 85, "name": "IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 50, "name": "CIRAD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CIRAD/?format=api" } ], "keywords": [ "NGS Data Analysis", "Web portals", "Pangenomics", "High performance computing", "Variant calling", "Data visualization", "Sequence analysis", "Knowledge representation", "Phylogenomics", "Workflow development" ], "fields": [ "Biologie", "Agro-alimentaire", "Biotechnologie", "Informatique" ], "orgid": null, "tools": [ "AgroLD", "Banana_Genome_Hub", "Cocoa_Genome_Hub", "Coffee_Genome_Hub", "culebront", "galaxy", "gemo", "Gigwa", "", "panache", "panexplorer", "Rice_Genome_Hub", "", "Sugarcane_Genome_Hub", "toggle", "tremolo" ], "services": [], "leaders": [], "deputies": [], "scientificLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/193/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/350/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/536/?format=api" ], "technicalLeaders": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/500/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "members": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/731/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/735/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/733/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/544/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/612/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/775/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/856/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/276/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/573/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/193/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/350/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/545/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/536/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/564/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/584/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/536/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/193/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/350/?format=api" ], "ifbMembership": "Member platform", "platforms": [], "is_active": true, "closing_date": null, "lat": "43.643777", "lng": "3.871175", "updated_at": "2025-12-10T15:23:05.372882Z" } ] }
