{"count":686,"next":null,"previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=660&ordering=logo_url","results":[{"id":466,"name":"Diplôme Universitaire en Bioinformatique Intégrative - session 2019 / University Diploma in Integrative Bioinformatics - 2019 session","shortName":"DUBii 2019","description":"La bioinformatique est devenue une compétence incontournable pour l'analyse de données de natures diverses : génomes, transcriptomes, protéomes, métabolomes, structures macromoléculaires, réseaux d'interactions. L'appropriation par les biologistes des méthodes et des outils de biostatistique et bioinformatique intégrative est un enjeu majeur pour la montée en compétence des équipes de recherche et des plateformes de service.\r\n\r\nL'université de Paris propose en partenariat avec l'Institut Français de Bioinformatique (IFB) la troisième édition du Diplôme Universitaire en Bioinformatique intégrative (DUBii). Cette formation s’adresse en priorité à des biologistes ou à des médecins souhaitant évoluer en compétences ou envisager une reconversion professionnelle et ayant déjà acquis des compétences (formation courte, autoapprentissage, expérience de terrain) en informatique ou bioinformatique / biostatistique (environnement Unix, Python ou R ou autre langage de programmation). \r\n\r\nLe DUBii fournira une formation théorique et pratique, complétée par une période d'immersion de 20 jours sur l'une des plateformes régionales de l'IFB, qui mobilisera, dans le cadre d'un projet tutoré, l'ensemble des méthodes et outils appris durant les cours pour réaliser un projet personnel de bioinformatique intégrative. Ce projet combinera des données propres à chaque participant produites dans son laboratoire (principe BYOD : “Bring Your Own Data”) ou collectées à partir de bases de données publiques. \r\n\r\n Cette formation se déroulera pendant 8 semaines réparties entre :\r\nLes cours : 4 semaines à raison de 4 jours/semaine en présentiel (96h)\r\nLe projet tutoré : 20 jours sur l'une des plateformes bioinformatique de l'IFB","homepage":"https://ressources.france-bioinformatique.fr/fr/du-bii","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-01-28","end_date":"2019-06-14","venue":"","city":"Paris","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2018-07-01","registration_closing":"2018-10-15","registration_status":"closed","courseMode":"Onsite"},{"id":642,"name":"A Hackathon for microbial data analysis workflow FAIRification","shortName":"","description":"The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.\r\n\r\nIn short, the objectives of this hackathon are to:\r\n- Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability\r\n- Implement robust tests to ensure workflow reliability and accuracy\r\n- Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability\r\n- Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards\r\n- Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab\r\n\r\nThis hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! Experts and IWC experienced users will be participating in the hackathon to support and explain the requirements during the event.","homepage":"https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3697","http://edamontology.org/topic_3941","http://edamontology.org/topic_0121","http://edamontology.org/topic_3174"],"keywords":["Galaxy","Workflow development"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":1,"name":"CNRS - IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=json"}],"organisedByOrganisations":[{"id":87,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":31,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=json"}],"logo_url":null,"updated_at":"2024-11-22T09:55:01.514886Z","type":"Workshop","start_date":"2024-11-21","end_date":"2024-11-21","venue":"Online with a\r\n       • a Zoom room, open the whole week\r\n       • 2 stand-ups to accommodate different time zones\r\n       • Several brainstorming meetings\r\n       • microGalaxy Matrix chat for communication","city":"","country":"","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-10-10","registration_closing":null,"registration_status":"open","courseMode":"Online"},{"id":472,"name":"Workflow4metabolomics - 2021 session postponed to 2022, march","shortName":"W4E 2021","description":"Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4Metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, FIA and NMR analysis. Such features are of major values for teaching computational metabolomics to experimenters, and previous courses using W4M since 2014 have been very successful.","homepage":"https://workflow4metabolomics.org/w4e2021","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-03-21","end_date":"2022-03-25","venue":"","city":"Toulouse","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":439,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform - novembre 2022","shortName":"MicroScope training - nov 2022","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.","homepage":"https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/","is_draft":false,"costs":["2500 € for private companies","1350 € for academics","945 € for students"],"topics":["http://edamontology.org/topic_0085","http://edamontology.org/topic_3301","http://edamontology.org/topic_0797"],"keywords":["Genome analysis","Sequence annotation"],"prerequisites":["Licence"],"openTo":"Everyone","accessConditions":"External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":15,"name":"Laboratory of Bioinformatics Analyses for Genomics and Metabolism","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=json"}],"organisedByOrganisations":[],"organisedByTeams":[{"id":9,"name":"MicroScope","url":"https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=json"}],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-11-21","end_date":"2022-11-25","venue":"Evry University Paris Saclay","city":"Evry","country":"France","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-01-24","registration_closing":"2022-10-20","registration_status":"closed","courseMode":"Onsite"},{"id":404,"name":"Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - Session 2","shortName":"FAIR data - Session 2","description":"L’Institut Français de Bioinformatique (IFB) organise une formation à destination de bioinformaticiens, biologistes et médecins. La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.","homepage":"https://www.france-bioinformatique.fr/formation/fair-data-science-ouverte-et-pgd-session-2/","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3571","http://edamontology.org/topic_3420","http://edamontology.org/topic_0219"],"keywords":["Données"],"prerequisites":[],"openTo":"Everyone","accessConditions":"public","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"}],"organisedByOrganisations":[{"id":43,"name":"IFB-core","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2021-11-15","end_date":"2021-11-18","venue":"Online zoom session","city":"","country":"France","geographical_range":"National","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/655/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2021-09-27","registration_closing":"2021-10-27","registration_status":"closed","courseMode":"Online"},{"id":485,"name":"IMGT® standards, databases, tools and web resources - Session 2022","shortName":"IMGT workshop","description":"Presentation of IMGT® patterns and resources for the study of genes, expressed repertoires and three-dimensional structures of immunoglobulins (antibodies) and T cell receptors.","homepage":"https://www.biocampus.cnrs.fr/index.php/fr/ateliers-a-venir-inscriptions/68-presentation-des-standards-des-bases-de-donnees-outils-et-ressources-web-d-imgt","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_3930","http://edamontology.org/topic_3948"],"keywords":["Protein structures","Immune repertoire analysis","Monoclonal antibody","Immunology"],"prerequisites":["Biologists"],"openTo":"Everyone","accessConditions":"","maxParticipants":10,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/339/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-06-03","end_date":null,"venue":"","city":"Montpellier","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2022-05-20","registration_status":"closed","courseMode":"Onsite"}]}