{"count":675,"next":null,"previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=640&ordering=-updated_at","results":[{"id":387,"name":"Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe","shortName":"","description":"This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n","homepage":"https://southgreenplatform.github.io/trainings//galaxyToggle/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-03-22","end_date":null,"venue":"","city":"Centre IRD, Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":334,"name":"Phylogénie moléculaire","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-10-08","end_date":"2017-10-12","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":260,"name":"Linux/Unix","shortName":"","description":"This training presents the following points: how to access the platform, how to use a Unix environment, how to create and manipulate and transfer files with command line from your computer toward our cluster and vice versa. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/linux-2/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Linux","Cluster"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/bioinfo_logo-RVB_3.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-10-13","end_date":null,"venue":"","city":"Auzeville-Tolosane","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":206,"name":"Marseille Hackathon Training Event","shortName":"","description":" 3-days training session / hackathon in Marseille","homepage":"https://www.greekc.org/activity/marseille-training-event/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"}],"organisedByOrganisations":[{"id":10,"name":"GREEKC","url":"https://catalogue.france-bioinformatique.fr/api/organisation/GREEKC/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/Logotype_pictogramme-128.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-04-23","end_date":"2019-04-26","venue":"","city":"Faculté des science de Luminy, Marseille","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":247,"name":"Annotation de génomes microbiens","shortName":"","description":"Modules en prépartion....\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Metagenomics","Genome analysis","Structural and functional annotation of genomes","Genomics (DNA-seq)"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-05-14","end_date":"2017-05-17","venue":"","city":"Jouy en Josas","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":136,"name":"Fouille de données et analyse de données NGS avec R","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-11-19","end_date":"2017-11-22","venue":"","city":"CBiB","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":384,"name":"Introduction to High-performance computing","shortName":"","description":"This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr​\n\n","homepage":"https://southgreenplatform.github.io/trainings//HPC/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-03-14","end_date":null,"venue":"","city":"Centre IRD, Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":351,"name":"Data collection and registration of Patient organisations for Orphanet information scientists","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-09-18","end_date":null,"venue":"","city":"Paris (à distance","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":116,"name":"Training for Orphanet Senior Information Scientists","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-10-10","end_date":"2017-10-12","venue":"","city":"Paris, France","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":108,"name":"Survival Guide for Perl applied to Bioinformatics","shortName":"","description":"This course provides an introduction to programming using Perl.","homepage":"https://southgreenplatform.github.io/trainings//perl/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-10-01","end_date":"2017-10-05","venue":"","city":"ISRA, Bel Air, Dakar (Sénégal)","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":391,"name":"INTRODUCTION À L'ANALYSE DE DONNÉES","shortName":"","description":"\nL'utilisation de plus en plus répandue de techniques d’imagerie et de séquençage à haut-débit en biologie est en train de révolutionner les sciences du vivant et de modifier en profondeur leurs pratiques. Dans ce contexte, des outils statistiques sont développés pour permettre d’analyser ces données de hautes dimensions, et la maîtrise de ces outils devient de plus en plus nécessaire pour produire des résultats de bonne qualité. Ce cours de 4 semaines couvrira les étapes nécessaires pour mettre en place un processus d’analyse de données, depuis la planification de l’expérience jusqu’à la fouille des données en passant par l’échantillonnage, les test d’hypothèses, la modélisation statistique etc.\nCe cours s’adresse en priorité aux étudiants de première année de thèse de l’Institut Pasteur. Tout étudiant en thèse sera automatiquement inscrit à ce cours, mais les élèves de 2e année, de 3e année ou les post-doctorants peuvent également s’inscrire, dans la limite des places disponibles. Il est à noter que le cours est obligatoire pour les étudiants de 1ère année. Des dispenses partielles ou totales sont possibles pour les étudiants qui ont déjà des connaissances en statistique, en mathématique ou en physique. Le cours déroulera sur 4 semaines, 4 jours par semaine, trois heures par jour. Chaque séance de trois heures alternera cours magistral et mise en pratique. Il y aura deux sessions : la première commencera le 22 octobre 2018 et la deuxième le 14 janvier 2019.\nChacune de ces deux sessions sera précédée d’une séance d’introduction à l’informatique. Cette séance proposera des notions d’architecture de l’ordinateur, de système d’organisation des fichiers et de format de fichiers. Chaque session sera également suivie d’un cours optionnel sur l’analyse et le traitement des images.\nPour plus d’information, ainsi que pour les inscriptions au module optionnel et les demandes d’exemption, rendez-vous sur la page du cours : https://c3bi.pasteur.fr/introduction-to-data-analysis-2018-19/\nThèmes abordés\nLe module d’analyse de données couvrira un large champ de notions nécessaires aux étudiants pour planifier leurs expériences, analyser et explorer leurs données, interpréter les résultats et générer des figures à des fins de publication. Il abordera des notions de base en statistique, dont les analyses uni- et multivariées, les analyses descriptives, les distributions statistiques usuelles utilisées en biologie, ainsi que les tests d’hypothèses. Les exercices et travaux pratiques seront réalisés avec R et RStudio. Plusieurs séances seront consacrées à une introduction à l’utilisation du langage de programmation R avant d’aborder les notions de statistiques et d’analyse de données.\nLe module d’analyse d’images introduira les principes de base de l’analyse d’image, et portera plus particulièrement sur l’extraction d’information quantitative d’images de microscopie. Ce cours est destiné aux personnes ayant peu ou pas d’expérience en analyse d’image. Il sera très orienté sur la pratique : des cours magistraux de courte durée seront immédiatement suivis de sessions pratiques. Il aidera à la fois les microscopistes débutants et experts qui n’ont jamais eu de formation concrète en analyse d’image.\n \n\n","homepage":"https://www.pasteur.fr/fr/introduction-data-analysis","is_draft":false,"costs":["Free"],"topics":[],"keywords":["Biostatistics","Statistical Tests","Regression","Dimension reduction","Image analysis","Descriptive statistics","Multivariate analyses"],"prerequisites":["Master (M2 uniquement)"],"openTo":"Internal personnel","accessConditions":"\n\n \n\n\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":12,"name":"INCEPTION","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/INCEPTION/?format=json"}],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-01-13","end_date":"2019-02-07","venue":"","city":"Institut Pasteur","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":52,"name":"Bioinformatique pour le traitement de données de séquençage (NGS)","shortName":"","description":"Bioinformatics for NGS data analysis","homepage":"http://cnrsformation.cnrs.fr/stage-17010-Bioinformatique-pour-le-traitement-de-d…","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/logo-cnrs_0_0.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-03-27","end_date":"2017-03-31","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":246,"name":"Analyse primaire de données issues de  séquenceurs nouvelle génération sous Galaxy","shortName":"","description":"\nObjectifs\n\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de NGS. Application aux outils de mapping et d’assemblage.\nProgramme\nThéorie \n•Présentation des différents types de séquenceurs\n•Les grandes familles d’algorithmes de mapping de lectures courtes d’assemblage et les outils associés\nPratique\nAnalyse des données de séquençage d’un génome bactérien\n•Contrôle qualité\n•Assemblage de-novo\noNettoyage des données\noAssemblage\noVisualisation et statistiques sur l’assemblage\n•Comparaison à un génome de référence :\noMapping des lectures sur un génome proche\noVisualisation du mapping \n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis","Galaxy","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-03-13","end_date":null,"venue":"","city":"Jouy en Josas","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":311,"name":"Linux Initiation","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-11-27","end_date":null,"venue":"","city":"Roscoff","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":390,"name":"Introduction to R Language","shortName":"","description":"https://cnrsformation.cnrs.fr/stage-19024-Langage-R--introduction.html?a...\n","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Formation payante dans le catalogue CNRS.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-05-20","end_date":null,"venue":"","city":"CBiB","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null}]}