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bioinformaticiens/biostatisticiens/bioanalystes souhaitant acquérir des compétences théoriques et pratiques en bioinformatique intégrative.\r\nCette école rassemble une équipe pédagogique de 10 personnes et pourra accueillir 30 participants maximum pour sa nouvelle édition.\r\nLes sessions pratiques de l’école thématique s’appuieront sur des jeux de données fournis par les formateurs, spécialement sélectionnés pour illustrer les concepts abordés et permettre une mise en application concrète des méthodes présentées.\r\nPar ailleurs, des temps de travail en sous-groupes permettront à celles et ceux qui le souhaitent d’analyser leurs propres données(Bring Your Own Data BYOD), sous réserve que ces données soient partageables au sein des participants, adaptées aux approches présentées durant la formation et non sensibles (par exemple, ne contenant pas d’informations liées à des patients ou des données confidentielles).\r\nCe mode de fonctionnement permettra d’adapter les exercices aux contextes scientifiques réels des participants et de favoriser les échanges autour de cas pratiques variés.\r\nL’ensemble de la formation reposera sur l’utilisation des ressources de calcul et environnements de travail de l’Institut Français de Bioinformatique (https://www.france-bioinformatique.fr/calcul-et-stockage/).\r\nLes participants sont donc invités à respecter les conditions d’utilisation du Cluster IFB, notamment celles concernant le traitement de données dites sensibles ou de santé humaine, détaillées à l’adresse suivante : https://doc.cluster.france-bioinformatique.fr/terms-of-usage/#cas-des-donnees-dites-sensibles-ou-de-sante-humaine. Cette démarche garantit un cadre de travail conforme aux bonnes pratiques en matière de gestion et de partage des données scientifiques.\r\n\r\nPublic visé\r\nCette formation est ouverte à tous les scientifiques (doctorant·e·s, ingénieur·e·s, chercheur·e·s) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.\r\n\r\nPré-requis\r\n- Connaissances de base en Unix/shell, R\r\n- Autonomie dans la gestion et l’administration de son poste de travail (installation de librairies et utilisation des environnements de packaging type conda)\r\n- Une expérience préalable en analyse de données, idéalement appliquée à un jeu de données omiques, est attendue.\r\n\r\nObjectifs pédagogiques\r\nLa formation a pour objectif  :\r\n- d’introduire les concepts de bases et les différents types d’approches utilisées en bioinformatique intégrative\r\n- de proposer un approfondissement et une mise en pratique de ces approches sur un/des jeux de données intégrant différents types de données omiques\r\n- de faire bénéficier aux participants de l’expertise de l'équipe pédagogique sur la mise en œuvre des méthodes intégratives présentées durant la formation sur des jeux de données proposés par les participants.\r\nA la fin de cette formation les participants :\r\n- auront acquis un socle de connaissances générales en bioinformatique intégrative \r\n- auront identifié et appliqué sur un exemple les méthodes les plus utilisées en bioinformatique intégrative (méthodes de réduction de dimension, approches Réseaux, web sémantique) et auront mis en œuvre une analyse intégrative sur un/des jeux de données proposés lors de la - formation.","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=45","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_3391","http://edamontology.org/topic_3366","http://edamontology.org/topic_0091"],"keywords":["Methodology","Biostatistics","Biological network inference and analysis","Dimension reduction","Semantic web","Integration of heterogeneous data","Data Integration","Tool integration"],"prerequisites":["Linux and knowledge of NGS formats","Basic knowledge of R","Python - basic knowledge"],"openTo":"Everyone","accessConditions":"Cette formation est ouverte à tous les scientifiques (doctorant·e·s, ingénieur·e·s, chercheur·e·s) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":1,"name":"CNRS - 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Cartes Michelin 82 et 245.\r\nAvion : Nice (70 km), Toulon (90 km), Marseille (140 km).\r\n\r\nTransfert : Navettes depuis la gare de St Raphael. Taxis depuis l’aéroport de\r\nNice (sur réservation).\r\n\r\nCAES du CNRS\r\nLa Villa Clythia\r\n2754, rue Henri Giraud\r\n83600 Fréjus","city":"Fréjus","country":"France","geographical_range":"National","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/750/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/657/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/722/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/146/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/721/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-09-12","registration_closing":"2022-10-12","registration_status":"closed","courseMode":"Onsite"},{"id":652,"name":"Analyses NGS avec R","shortName":"","description":"Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.","homepage":"https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_0605"],"keywords":["NGS Data Analysis","R Language","Gene expression differential analysis","Data visualization"],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":6,"name":"CNRS formation entreprise","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=json"}],"organisedByOrganisations":[{"id":1,"name":"CNRS formation entreprises","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=json"}],"organisedByTeams":[{"id":6,"name":"CBiB","url":"https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=json"}],"logo_url":"https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png","updated_at":"2025-12-09T10:03:11.757971Z","type":"Training course","start_date":"2026-06-04","end_date":"2026-06-05","venue":"","city":"Bordeaux","country":"France","geographical_range":"National","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/34/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"future","registration_opening":"2025-12-03","registration_closing":"2026-05-20","registration_status":"closed","courseMode":"Onsite"},{"id":554,"name":"Graphiques sous R avec ggplot2 / Graphics with R-ggplot2 (2023 session )","shortName":"Graphics with R-ggplot2 (2023)","description":"Objectifs pédagogiques :\r\nÀ l’issue de la formation, les stagiaires connaîtront les principales fonctionnalités du package R « ggplot2 » et la démarche sous-jacente pour construire un graphique à partir d’un tableau de données. Ils seront capables de réaliser plusieurs types de représentations graphiques, telles que des nuages de points, des courbes, des histogrammes, des diagrammes en bâtons, des boxplots, des heatmaps, etc.  Les stagiaires pourront apporter leur propre tableau de données et pratiquer dessus en fin de formation. \r\n\r\nProgramme :\r\n- Principes généraux liés au package ggplot2 \r\n- Principales fonctions graphiques pour réaliser des nuages de points, des histogrammes, des boxplots, etc. \r\n- Principales fonctions pour jouer sur les coloriages en fonction d’une variable, sur les échelles de couleurs, sur les graduations, sur les représentations multiples, etc.","homepage":"https://migale.inrae.fr/trainings","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0605","http://edamontology.org/topic_0091","http://edamontology.org/topic_2269"],"keywords":["Représentations graphiques"],"prerequisites":["Langage R de base"],"openTo":"Everyone","accessConditions":"","maxParticipants":10,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":88,"name":"BioinfOmics","url":"https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"}],"logo_url":"https://migale.inrae.fr/sites/default/files/migale-orange_0.png","updated_at":"2024-01-17T10:24:23.197102Z","type":"Training course","start_date":"2023-05-15","end_date":"2023-05-15","venue":"","city":"Jouy-en-Josas","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2023-02-01","registration_closing":"2023-05-08","registration_status":"closed","courseMode":"Onsite"},{"id":644,"name":"EBAII : Ecole de Bioinformatique \"Traitement des données de génomique obtenues par séquençage à haut débit\"  niveau intermédiaire - session 2025","shortName":"EBAII N2 session juin 2025","description":"Objectifs\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers thématiques en session parallèle (bulk RNA-seq, ChIP-seq, variants génomiques/GWAS), et abordera la visualisation et l’intégration des données. L’école vise à approfondir les concepts, à manipuler des outils informatiques avancés et à en interpréter les résultats.\r\nElle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=35","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_3391","http://edamontology.org/topic_3366","http://edamontology.org/topic_0092","http://edamontology.org/topic_3168","http://edamontology.org/topic_0091"],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS)  avec un niveau de base en ligne de commande, R, et (au choix) RNA-seq, ChIP-seq ou variants DNA-seq.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://www.sb-roscoff.fr/sites/www.sb-roscoff.fr/files/styles/large/public/images/station-biologique-roscoff-roscoff-4404.jpg","updated_at":"2025-01-09T13:06:41.575826Z","type":"Training course","start_date":"2025-06-01","end_date":"2025-06-06","venue":"","city":"Roscoff","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-01-08","registration_closing":"2025-03-01","registration_status":"closed","courseMode":"Onsite"},{"id":667,"name":"LINUX - session 11 March 2025","shortName":"","description":"This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. 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