{"count":686,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=620&ordering=geographical_range","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=580&ordering=geographical_range","results":[{"id":727,"name":"WheatIS data discovery - 2020","shortName":"WheatIS Search 2020","description":"The WheatIS project aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is endorsed by the Wheat Initiative.\r\nThe WheatIS data discovery tool allows to search data in all the wheat resources around the world.\r\nThis training will describe how to use the tool, what data are available, how to join, etc.","homepage":"https://urgi.versailles.inrae.fr/About-us/News/WheatIS-webinar","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3366","http://edamontology.org/topic_3489","http://edamontology.org/topic_0625","http://edamontology.org/topic_0780","http://edamontology.org/topic_0091"],"keywords":["Données"],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"Public","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":20,"name":"Wheat Initiative","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Wheat%20Initiative/?format=json"}],"organisedByOrganisations":[{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"}],"organisedByTeams":[{"id":26,"name":"URGI","url":"https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=json"}],"logo_url":"https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png","updated_at":"2025-09-11T13:39:53.516064Z","type":"Training course","start_date":"2020-02-25","end_date":"2020-02-25","venue":"","city":"","country":"","geographical_range":"International","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Online"},{"id":745,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform","shortName":"MicroScope training - April 2026","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. 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Over the past few years, a rapid and disruptive acceleration of progress in AI has occurred, driven by significant advances in widespread data availability, computing power and machine learning. Remarkable strides were made in particular in the development of foundation models - AI models trained on extensive volumes of unlabelled data. Moreover, given the large amounts of omics data that are being generated and made accessible to researchers due to the drop in the cost of high-throughput technologies, analysing these complex high-volume data is not trivial, and the use of classical statistics can not explore their full potential. As such, Machine Learning (ML) and Artificial Intelligence (AI) have been recognized as key opportunity areas, as evidenced by a number of ongoing activities and efforts throughout the community.\r\n\r\nHowever, beyond the technological advances, it is equally important that the individual researchers acquire the necessary knowledge and skills to fully take advantage of Machine Learning. Being aware of the challenges, opportunities and constraints that ML applications entail, is a critical aspect in ensuring high quality research in life sciences.\r\n\r\nRecognizing this need, this week-long training will bring together experts from four ELIXIR Nodes and deliver a hands-on, high-intensity course available for members from all ELIXIR Nodes.\r\n\r\nLearners will be guided across the various steps in Machine Learning, from the foundational concepts, through the deep learning and generative AI techniques, closely complemented by insights into the existing reporting (DOME Recommendations) and regulatory frameworks (EU AI Act).\r\n\r\nThis 4-day school will involve around 10 trainers/helpers from across 4 different ELIXIR nodes and 30 participants from across all ELIXIR nodes. It will be hosted in France in May 2025.","homepage":"https://moodle.france-bioinformatique.fr/enrol/index.php?id=34","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_3474","http://edamontology.org/topic_0091"],"keywords":["Artificial Intelligence","Machine learning","Python"],"prerequisites":["Intermediate Python programming","Machine Learning basics","Data analysis"],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/810/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=json"],"elixirPlatforms":[{"id":1,"name":"Training","url":"https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=json"}],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1-300x226.png","updated_at":"2024-12-19T15:43:33.918124Z","type":"Training course","start_date":"2025-05-19","end_date":"2025-05-23","venue":"CAES Centre Paul-Langevin","city":"Aussois","country":"France","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-12-18","registration_closing":"2025-01-24","registration_status":"closed","courseMode":"Onsite"},{"id":606,"name":"5th workshop Single-Cell : Transcriptomics, Spatial and Long reads","shortName":"5th SincellTE","description":"This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.\r\n\r\nAll the classes will be taught in English","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=27","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Single-Cell Sequencing","long read sequencing","spatial transcriptomics"],"prerequisites":["Master","Autre (Diplôme universitaire, école d'ingénieur ...)"],"openTo":"Everyone","accessConditions":"Participants must have prior experience on NGS data analysis with everyday use of R and/or Python and good knowledge of Unix command line. Before the training, participants are advised to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets. \r\nIt is not necessary to have personal single-cell data to analyse.","maxParticipants":30,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":48,"name":"Institut Pasteur","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://github.com/IFB-ElixirFr/Training/blob/main/logo_sincellte.png?raw=true","updated_at":"2024-03-20T16:00:20.423462Z","type":"Training course","start_date":"2024-10-20","end_date":"2024-10-25","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-03-12","registration_closing":"2024-05-07","registration_status":"closed","courseMode":"Onsite"},{"id":604,"name":"Hackathon - Improving the annotation of Galaxy resources for microbial data analysis and beyond","shortName":"","description":"This hackathon aims to improve the annotation of Galaxy resources for microbial data analysis and beyond\r\n\r\nThe objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:\r\n\r\n - Linking microbial Galaxy tools to bio.tools to obtain EDAM ontology annotation\r\n - Improving bio.tools annotations\r\n - Annotating existing microbial-related tutorials with EDAM terms\r\n - Reflecting on the addition of EDAM terms to workflows\r\n - Reflecting on missing terms in the EDAM ontology for microbial data analyses\r\n - Brainstorming about a way to connect tool annotations to improve training and workflow annotations","homepage":"https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annotation/#preliminary-schedule","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3697","http://edamontology.org/topic_3941","http://edamontology.org/topic_3174"],"keywords":["EDAM","Annotation","Galaxy"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":1,"name":"CNRS - IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=json"}],"organisedByOrganisations":[{"id":87,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":31,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=json"}],"logo_url":null,"updated_at":"2024-02-19T10:09:50.076964Z","type":"Workshop","start_date":"2024-03-11","end_date":"2024-03-15","venue":"Online with a\r\n       • a Zoom room, open the whole week\r\n       • 2 daily stand-ups to accommodate different time zones\r\n       • Several brainstorming meetings\r\n       • microGalaxy Matrix chat for communication","city":"","country":"","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-02-19","registration_closing":null,"registration_status":"open","courseMode":"Online"},{"id":642,"name":"A Hackathon for microbial data analysis workflow FAIRification","shortName":"","description":"The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.\r\n\r\nIn short, the objectives of this hackathon are to:\r\n- Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability\r\n- Implement robust tests to ensure workflow reliability and accuracy\r\n- Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability\r\n- Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards\r\n- Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab\r\n\r\nThis hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! Experts and IWC experienced users will be participating in the hackathon to support and explain the requirements during the event.","homepage":"https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3697","http://edamontology.org/topic_3941","http://edamontology.org/topic_0121","http://edamontology.org/topic_3174"],"keywords":["Galaxy","Workflow development"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":1,"name":"CNRS - IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=json"}],"organisedByOrganisations":[{"id":87,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":31,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=json"}],"logo_url":null,"updated_at":"2024-11-22T09:55:01.514886Z","type":"Workshop","start_date":"2024-11-21","end_date":"2024-11-21","venue":"Online with a\r\n       • a Zoom room, open the whole week\r\n       • 2 stand-ups to accommodate different time zones\r\n       • Several brainstorming meetings\r\n       • microGalaxy Matrix chat for communication","city":"","country":"","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-10-10","registration_closing":null,"registration_status":"open","courseMode":"Online"},{"id":436,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform - mars 2022","shortName":"MicroScope training mars 2022","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. 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Furthermore, since genetic studies relies on the integration and the linking between phenotype and genotype datasets, relevant section of MIAPPE are beginning to be used for genotyping standards.\r\nThis formation will cover a general introduction of the MIAPPE principles and some examples to illustrate different use cases on the usage of MIAPPE for plant phenotyping data standardization.","homepage":"https://urgi.versailles.inrae.fr/About-us/News/Webinar-rep-pheno","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3298","http://edamontology.org/topic_3572","http://edamontology.org/topic_0219","http://edamontology.org/topic_0625","http://edamontology.org/topic_0780"],"keywords":["Données"],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"Public","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":39,"name":"URGI - US1164","url":"https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=json"},{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"}],"organisedByTeams":[{"id":26,"name":"URGI","url":"https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=json"}],"logo_url":"https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png","updated_at":"2025-11-28T13:21:44.473980Z","type":"Training course","start_date":"2021-04-02","end_date":"2021-04-02","venue":"","city":"","country":"","geographical_range":"International","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=json"],"trainingMaterials":[{"id":150,"name":"Plant Data Managment for Phenotyping Experiments - MIAPPE","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Plant%20Data%20Managment%20for%20Phenotyping%20Experiments%20-%20MIAPPE/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Online"},{"id":439,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform - novembre 2022","shortName":"MicroScope training - nov 2022","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . 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