{"count":686,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=560&ordering=-openTo","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=520&ordering=-openTo","results":[{"id":522,"name":"Utilisation du cluster - SLURM / Cluster usage - SLURM - Session 1 - 2023","shortName":"Cluster SLURM 2023 S1","description":"Objectifs\r\n- Disposer des concepts et de bonnes pratiques d’utilisation des ressources de calcul.\r\n- Être capable d’utiliser les ressources de calcul de la plateforme en toute autonomie.\r\nProgramme\r\n- Introduction : les équipements (calcul et stockage), espaces de travail, les outils et les données.\r\n- Calcul parallèle : concepts, ressources\r\n- Soumission de jobs (srun, sbatch)\r\n- Monitorer, vérifier, controler les jobs (squeue, scontrol, scancel, sacct).\r\n- Base de l’optimisation d’un job\r\n- Solutions de parallélisation des jobs : (--array)","homepage":"https://abims.sb-roscoff.fr/training/courses","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3316"],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"","maxParticipants":18,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":65,"name":"SBR - Roscoff Marine Station","url":"https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=json"}],"organisedByTeams":[{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"}],"logo_url":"https://abims.sb-roscoff.fr/sites/default/files/abims.png","updated_at":"2023-05-17T09:26:47.718424Z","type":"Training course","start_date":"2023-06-22","end_date":"2023-06-22","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2023-02-22","registration_closing":"2023-05-15","registration_status":"closed","courseMode":"Onsite"},{"id":639,"name":"Introduction to Linux","shortName":"Introduction to Linux","description":"Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. 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Machine learning (ML) is a discipline in which computers perform automated learning without being programmed explicitly and assist humans to make sense of large and complex data sets. The analysis of complex high-volume data is not trivial and classical tools cannot be used to explore their full potential. Machine learning can thus be very useful in mining large omics datasets to uncover new insights that can advance the field of bioinformatics.\r\n\r\nThis 2-day course will introduce participants to the machine learning taxonomy and the applications of common machine learning algorithms to omics data. The course will cover the common methods being used to analyse different omics data sets by providing a practical context through the use of basic but widely used R libraries. The course will comprise a number of hands-on exercises and challenges where the participants will acquire a first understanding of the standard ML processes, as well as the practical skills in applying them on familiar problems and publicly available real-world data sets.","homepage":"https://fpsom.github.io/2021-06-ml-elixir-fr/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":8,"name":"Elixir","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2021-06-16","end_date":"2021-06-17","venue":"","city":"","country":"","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Online"},{"id":467,"name":"Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - édition Strasbourg - Session 1 (mars 2022)","shortName":"IFB-SO-PGD-Strasbourg-mars2022","description":"Cette formation, à destination de bioinformaticiens et biologistes, présente les principes FAIR de gestions de données dans un projet de bioinformatique ou de biologie.Elle aborde les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présente sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées pour gérer les données d’un projet de recherche.","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=10","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"This training is dedicated for academics in Strasbourg area","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":79,"name":"IBMP","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IBMP/?format=json"},{"id":84,"name":"ICube","url":"https://catalogue.france-bioinformatique.fr/api/organisation/ICube/?format=json"},{"id":83,"name":"IGBMC","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IGBMC/?format=json"}],"organisedByTeams":[{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"}],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-03-23","end_date":"2022-03-24","venue":"IGBMC\r\n1 Rue Laurent Fries\r\n67400 Illkirch-Graffenstaden","city":"Illkirch Graffenstaden","country":"France","geographical_range":"Local","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/655/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2021-12-01","registration_closing":"2022-03-06","registration_status":"closed","courseMode":"Onsite"},{"id":480,"name":"Initiation à R / R Initiation - 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New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.","homepage":"https://www.france-bioinformatique.fr/formation/single-cell-2022/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":["Master","Autre (Diplôme universitaire, école d'ingénieur ...)"],"openTo":"Everyone","accessConditions":"None","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png","updated_at":"2022-09-15T13:10:14.790898Z","type":"Training course","start_date":"2022-01-09","end_date":"2022-01-14","venue":"Roscoff Biological Station\r\nPlace Georges Teissier","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2021-09-15","registration_status":"closed","courseMode":"Onsite"},{"id":519,"name":"Initiation à Galaxy / Galaxy Initiation - Session 1 - 2023","shortName":"Galaxy Initiation - 2023 S1","description":"Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.","homepage":"https://abims.sb-roscoff.fr/training/courses","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_0769"],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":18,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://abims.sb-roscoff.fr/sites/default/files/abims.png","updated_at":"2023-05-17T09:27:23.408861Z","type":"Training course","start_date":"2023-06-19","end_date":"2023-06-19","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2023-02-22","registration_closing":"2023-05-15","registration_status":"closed","courseMode":"Onsite"},{"id":667,"name":"LINUX - session 11 March 2025","shortName":"","description":"This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.","homepage":"http://bioinfo.genotoul.fr/index.php/events/linux-2-2/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_3316"],"keywords":[],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-12-06T20:39:17.845500Z","type":"Training course","start_date":"2025-03-11","end_date":"2025-03-11","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-12-06","registration_closing":"2025-03-04","registration_status":"closed","courseMode":"Onsite"},{"id":509,"name":"New session of Molecular Phylogeny - Level 1","shortName":"New session of Phylogénie moléculaire - Niveau 1","description":"OBJECTIF\r\n- Savoir inférer un arbre phylogénétique et l'interpréter\r\n\r\nPRÉREQUIS\r\n- Savoir ce à quoi correspondent des séquences génétiques homologues\r\n- Avoir déjà utilisé les logiciels de base en bioinformatique\r\n- Connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres)\r\n- Avoir des notions de programmation\r\n\r\nPROGRAMME\r\n- Lignes de commandes Linux\r\n- Le format Newick\r\n- Dessin d'arbres\r\n- Alignements multiples et nettoyage\r\n- Modèles d'évolution\r\n- Choix de modèles\r\n- Définitions et propriétés des arbres\r\n- Méthodes de parcimonie\r\n- Méthodes de distance\r\n- Maximum de vraisemblance\r\n- Reconstruction phylogénétique Bayésienne\r\n- Bootstraps et autres supports de branches","homepage":"https://cnrsformation.cnrs.fr/liste-stages-176-Bioinformatique.html","is_draft":false,"costs":["1200 €"],"topics":["http://edamontology.org/topic_3299","http://edamontology.org/topic_0084","http://edamontology.org/topic_3293"],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":1,"name":"CNRS formation entreprises","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=json"}],"organisedByTeams":[{"id":7,"name":"ATGC","url":"https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=json"}],"logo_url":"http://www.atgc-montpellier.fr/pictures/ATGClogo.svg","updated_at":"2023-10-05T12:37:00.397895Z","type":"Training course","start_date":"2023-03-29","end_date":"2023-03-31","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":529,"name":"Cluster - session 18/04/2023","shortName":"","description":"This training session is designed to help you deal with the platform compute cluster and data banks. 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