{"count":668,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=520&ordering=-organisedByTeams","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=480&ordering=-organisedByTeams","results":[{"id":721,"name":"RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - 24-27 November  2025","shortName":"RNASeq bioinfo / biostat","description":"The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.","homepage":"https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_0203","http://edamontology.org/topic_3308"],"keywords":["NGS Data Analysis","Expression"],"prerequisites":["Linux/Unix","Cluster","Langage R de base"],"openTo":"Everyone","accessConditions":"Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/\r\nNon-academic\r\nfor non-academic: 550€ + 20% taxes (TVA) per day\t€2 200,00\t\r\n\r\nAcademic non-INRAE\r\nfor academic but non-INRAE: 170 € + 20% taxes (TVA) per day\t€680,00\t\r\n\r\nINRAE\r\nfor INRAE's staff: 150 € no VAT charged per day;\t€600,00","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":15,"name":"MIAT","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=json"}],"organisedByTeams":[{"id":33,"name":"Genotoul-biostat","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2025-05-09T13:21:03.858451Z","type":"Training course","start_date":"2025-11-24","end_date":"2025-11-27","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[{"id":135,"name":"Training RNASeq - bioinfo part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=json"},{"id":136,"name":"Training RNASeq - biostat part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-05-09","registration_closing":"2025-11-17","registration_status":"closed","courseMode":"Online"},{"id":722,"name":"HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ? December 1er 2025","shortName":"Nextflow/nf-core","description":"This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm","homepage":"https://bioinfo.genotoul.fr/index.php/events/how-to-run-a-nf-core-nextflow-workflow-on-genotoul-2/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_0769"],"keywords":["Nextflow"],"prerequisites":["Linux/Unix","Cluster"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":15,"name":"MIAT","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2025-05-09T13:20:57.741969Z","type":"Training course","start_date":"2025-12-01","end_date":"2025-12-01","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[{"id":143,"name":"Workflows nf-core - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Workflows%20nf-core%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-05-09","registration_closing":"2025-11-24","registration_status":"closed","courseMode":"Online"},{"id":612,"name":"RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024","shortName":"RNASeq bioinfo / biostat","description":"The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.","homepage":"https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_0203","http://edamontology.org/topic_3308"],"keywords":["NGS Data Analysis","Expression"],"prerequisites":["Linux/Unix","Cluster","Langage R de base"],"openTo":"Everyone","accessConditions":"Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":15,"name":"MIAT","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=json"}],"organisedByTeams":[{"id":33,"name":"Genotoul-biostat","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-03-26T14:25:27.655655Z","type":"Training course","start_date":"2024-05-14","end_date":"2024-05-17","venue":"","city":"Castanet Tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[{"id":135,"name":"Training RNASeq - bioinfo part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=json"},{"id":136,"name":"Training RNASeq - biostat part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-03-24","registration_closing":null,"registration_status":"open","courseMode":"Online"},{"id":723,"name":"Improve your command line skills by learning a few words of Perl - December 8 2025","shortName":"One line Perl","description":"This “Perl one-liners” training session is organized by the Sigenae platform. Perl one-liners are small and awesome Perl programs that fit in a single line of code and perform many operations such as replacing of text, spacing, deleting, calculation, manipulation in files and many more. This training will allow you to discover the power of Perl on the command line and learn how to use it to automate your file manipulations and command line generation with classical file formats such as tabulated text, fastq, sam/bam, and vcf.\r\n\r\nThis training lasts one day and is focused on practice. It consists of 3 parts with a large variety of exercises:\r\n\r\nIntroduction to Perl and its characteristics: Perl is a widely used programming language for data processing and task automation. We will introduce the main characteristics of Perl and discuss why it is particularly suited for biologists who want to manipulate files and generate command lines.\r\nPerl on the command line: we will show how to use Perl on the command line to perform common tasks, such as searching and replacing strings, merging files, and loop over lists of files.\r\nConcrete examples: we will present several concrete examples drawn from biology, such as extracting information from genomic sequence files, converting files between different formats, and generating command lines for data biology tools.\r\n \r\nThe session will take place in the room ‘salle de formation MIAT’ at INRAE center of Toulouse-Auzeville.","homepage":"https://bioinfo.genotoul.fr/index.php/events/onelineperl/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":[],"keywords":["Perl Langage"],"prerequisites":["Linux/Unix","Cluster"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/88/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/31/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png","updated_at":"2025-05-09T13:11:54.546597Z","type":"Training course","start_date":"2025-12-08","end_date":"2025-12-08","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-05-09","registration_closing":"2025-12-01","registration_status":"closed","courseMode":"Online"},{"id":611,"name":"Using sed and awk to modify large large text files - session 24/04/2024","shortName":"","description":"Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions.  The course is based mainly on exercises with small sections presenting concepts and commands.","homepage":"http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_3316"],"keywords":[],"prerequisites":["Linux/Unix"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/338/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-03-26T14:25:14.649994Z","type":"Training course","start_date":"2024-04-24","end_date":"2024-04-24","venue":"","city":"Castanet Tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[{"id":141,"name":"Sed and awk training - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Sed%20and%20awk%20training%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-03-24","registration_closing":null,"registration_status":"open","courseMode":"Online"},{"id":610,"name":"Cluster - session 23/04/2024","shortName":"","description":"This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.","homepage":"http://bioinfo.genotoul.fr/index.php/events/cluster-2/","is_draft":false,"costs":["Priced","Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":[],"keywords":["Linux","Cluster"],"prerequisites":["Linux/Unix"],"openTo":"Everyone","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-03-26T14:24:58.135354Z","type":"Training course","start_date":"2024-04-23","end_date":"2024-04-23","venue":"","city":"Castanet Tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[{"id":139,"name":"Cluster Slides - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20Slides%20-%20Genotoul-bioinfo/?format=json"},{"id":140,"name":"Cluster TP - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20TP%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-03-24","registration_closing":null,"registration_status":"open","courseMode":"Onsite"},{"id":608,"name":"LINUX - session 22/04/2024","shortName":"","description":"This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.","homepage":"http://bioinfo.genotoul.fr/index.php/events/linux-2-2/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_3316"],"keywords":[],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-03-26T14:24:31.157055Z","type":"Training course","start_date":"2024-04-22","end_date":"2024-04-22","venue":"","city":"Castanet Tolosan","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[{"id":137,"name":"Linux slides - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20slides%20-%20Genotoul-bioinfo/?format=json"},{"id":138,"name":"Linux TP - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-03-24","registration_closing":null,"registration_status":"open","courseMode":"Onsite"},{"id":407,"name":"6ème Ecole de Bioinformatique AVIESAN-IFB","shortName":"EBAI 2017","description":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers en session parallèle (RNA-seq, ChIP-seq, variants DNA-seq), et inclura une introduction à l’intégration des données,  ouverture aux approches “single-cell” ainsi qu’aux technologies lectures longues (Nanopore, PacBio).\r\nL’école vise à introduire les concepts et à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur plateforme.","homepage":"https://ressources.france-bioinformatique.fr/en/evenements/EBA2017","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. La formation approfondira progressivement l’usage de ces environnements au fil des sessions thématiques.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"},{"id":13,"name":"Aviesan","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Aviesan/?format=json"}],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"},{"id":17,"name":"GenOuest","url":"https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":1,"name":"EBIO","url":"https://catalogue.france-bioinformatique.fr/api/team/EBIO/?format=json"},{"id":25,"name":"TAGC-BU","url":"https://catalogue.france-bioinformatique.fr/api/team/TAGC-BU/?format=json"},{"id":2,"name":"Institut Curie - Bioinformatique","url":"https://catalogue.france-bioinformatique.fr/api/team/Institut%20Curie%20-%20Bioinformatique/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/EBA2016_0_1_1_0.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-11-12","end_date":"2017-11-17","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":189,"name":"Linux/Unix","shortName":"","description":"This training session has been designed to familiarize yourself with the platform resources and its organization.","homepage":"http://bioinfo.genotoul.fr/index.php/events/linux-2/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/logo_ifb_4.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-11-12","end_date":null,"venue":"","city":"Auzeville-Tolosane","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":724,"name":"SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - December 14-16 2025","shortName":"Variant calling","description":"This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.","homepage":"https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_2885","http://edamontology.org/topic_0102"],"keywords":[],"prerequisites":["Linux/Unix","Cluster"],"openTo":"Everyone","accessConditions":"hort-read alignment and small size variants calling (15/12/2025 - 16/12/2025)\r\nThe GenoToul bioinformatics platform, Sigenae and NED (GenPhySE) organize a series of training courses to familiarize yourself with the various resources it provides. These resources are currently: the hardware infrastructure, biological data banks and widely used bioinformatics softwares. This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\ncalendar\r\n \r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/88/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/31/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png","updated_at":"2025-05-09T13:20:15.323810Z","type":"Training course","start_date":"2025-12-15","end_date":"2025-12-16","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-05-09","registration_closing":"2025-12-08","registration_status":"closed","courseMode":"Online"},{"id":797,"name":"FAIR Bioinfo Grand-Ouest","shortName":"FAIR Bioinfo Grand-Ouest","description":"Les plateformes de bioinformatique du réseau Biogenouest (ABiMS, BiRD, GenOuest et SeBiMER) vous proposent une formation “FAIR-bioinfo” à destination des bioinformaticien.ne.s, bioanalystes et biostatisticien.ne.s.\r\n\r\nLors de cette formation, nous vous présenterons les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) et leur application dans les projets d’analyse et de développement.\r\nDes présentations théoriques suivies d’utilisations pratiques de plusieurs outils permettant d’améliorer la reproductibilité des analyses seront proposées.","homepage":"https://framaforms.org/inscription-formation-fair-bioinfo-grand-ouest-2026-1772636058","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_0091"],"keywords":["FAIR","Bioinformatics"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/202/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/106/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/529/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":17,"name":"GenOuest","url":"https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://ifb-elixirfr.gitlab.io/training/fair-bioinfo/sessions/2026-05-fair-bioinfo-grand-ouest/_imgs/biogenouest.png","updated_at":"2026-03-27T10:15:52.835260Z","type":"Training course","start_date":"2026-05-19","end_date":"2026-05-20","venue":"","city":"","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"future","registration_opening":"2026-03-26","registration_closing":"2026-04-07","registration_status":"closed","courseMode":"Onsite"},{"id":193,"name":"7ème Ecole de Bioinformatique AVIESAN-IFB","shortName":"EBAI 2018","description":"Initiation au traitement des données de génomique obtenues par séquençage à haut débit\r\n\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers en session parallèle (RNA-seq, ChIP-seq, variants DNA-seq), et inclura une introduction à l’intégration des données,  ouverture aux approches “single-cell” ainsi qu’aux technologies lectures longues (Nanopore, PacBio).\r\n\r\nL’école vise à introduire les concepts et à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur plateforme.","homepage":"https://ressources.france-bioinformatique.fr/fr/evenements/EBAI2018","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":40,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/207/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":17,"name":"GenOuest","url":"https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":25,"name":"TAGC-BU","url":"https://catalogue.france-bioinformatique.fr/api/team/TAGC-BU/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/EBA2016_0_1_1.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-11-25","end_date":"2018-11-30","venue":"Station biologique de Roscoff","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2018-05-31","registration_status":"closed","courseMode":"Onsite"},{"id":407,"name":"6ème Ecole de Bioinformatique AVIESAN-IFB","shortName":"EBAI 2017","description":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers en session parallèle (RNA-seq, ChIP-seq, variants DNA-seq), et inclura une introduction à l’intégration des données,  ouverture aux approches “single-cell” ainsi qu’aux technologies lectures longues (Nanopore, PacBio).\r\nL’école vise à introduire les concepts et à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur plateforme.","homepage":"https://ressources.france-bioinformatique.fr/en/evenements/EBA2017","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. La formation approfondira progressivement l’usage de ces environnements au fil des sessions thématiques.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"},{"id":13,"name":"Aviesan","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Aviesan/?format=json"}],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"},{"id":17,"name":"GenOuest","url":"https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"},{"id":1,"name":"EBIO","url":"https://catalogue.france-bioinformatique.fr/api/team/EBIO/?format=json"},{"id":25,"name":"TAGC-BU","url":"https://catalogue.france-bioinformatique.fr/api/team/TAGC-BU/?format=json"},{"id":2,"name":"Institut Curie - Bioinformatique","url":"https://catalogue.france-bioinformatique.fr/api/team/Institut%20Curie%20-%20Bioinformatique/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/EBA2016_0_1_1_0.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-11-12","end_date":"2017-11-17","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":641,"name":"Environments and best practices for using the BiRD cluster","shortName":"Best practices BiRD cluster","description":"Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of the cluster\r\n\r\nPedagogical Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Conda environment\r\n- Presentation of the computing cluster\r\n- Introduction to workflows using Snakemake","homepage":"https://pf-bird.univ-nantes.fr/training/cluster/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"Have an account on the BiRD cluster.","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T10:38:01.290168Z","type":"Training course","start_date":"2024-10-01","end_date":"2024-10-01","venue":"","city":"Nantes","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2024-09-20","registration_status":"closed","courseMode":"Onsite"},{"id":797,"name":"FAIR Bioinfo Grand-Ouest","shortName":"FAIR Bioinfo Grand-Ouest","description":"Les plateformes de bioinformatique du réseau Biogenouest (ABiMS, BiRD, GenOuest et SeBiMER) vous proposent une formation “FAIR-bioinfo” à destination des bioinformaticien.ne.s, bioanalystes et biostatisticien.ne.s.\r\n\r\nLors de cette formation, nous vous présenterons les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) et leur application dans les projets d’analyse et de développement.\r\nDes présentations théoriques suivies d’utilisations pratiques de plusieurs outils permettant d’améliorer la reproductibilité des analyses seront proposées.","homepage":"https://framaforms.org/inscription-formation-fair-bioinfo-grand-ouest-2026-1772636058","is_draft":false,"costs":[],"topics":["http://edamontology.org/topic_0091"],"keywords":["FAIR","Bioinformatics"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/202/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/106/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/529/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":17,"name":"GenOuest","url":"https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://ifb-elixirfr.gitlab.io/training/fair-bioinfo/sessions/2026-05-fair-bioinfo-grand-ouest/_imgs/biogenouest.png","updated_at":"2026-03-27T10:15:52.835260Z","type":"Training course","start_date":"2026-05-19","end_date":"2026-05-20","venue":"","city":"","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"future","registration_opening":"2026-03-26","registration_closing":"2026-04-07","registration_status":"closed","courseMode":"Onsite"},{"id":746,"name":"RNASeq Analysis","shortName":"RNASeq Analysis","description":"Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.","homepage":"https://pf-bird.univ-nantes.fr/training/rnaseq/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"Familiarity with basic Linux commands.","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T10:34:29.823975Z","type":"Training course","start_date":"2025-11-03","end_date":"2025-11-04","venue":"","city":"Nantes","country":"","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2025-10-29","registration_status":"closed","courseMode":"Onsite"},{"id":640,"name":"RNASeq Analysis","shortName":"RNASeq Analysis","description":"Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.","homepage":"https://pf-bird.univ-nantes.fr/training/rnaseq/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"Familiarity with basic Linux commands.","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2024-08-22T15:55:32.866676Z","type":"Training course","start_date":"2024-10-02","end_date":"2024-10-03","venue":"","city":"Nantes","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":639,"name":"Introduction to Linux","shortName":"Introduction to Linux","description":"Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell","homepage":"https://pf-bird.univ-nantes.fr/training/linux/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0605"],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T10:37:38.355916Z","type":"Training course","start_date":"2024-09-30","end_date":"2024-09-30","venue":"","city":"Nantes","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2024-09-25","registration_status":"closed","courseMode":"Online"},{"id":603,"name":"RNASeq Analysis","shortName":"RNASeq Analysis","description":"Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.","homepage":"https://pf-bird.univ-nantes.fr/training/rnaseq/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"Familiarity with basic Linux commands.","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2024-02-19T09:37:13.928843Z","type":"Training course","start_date":"2024-03-20","end_date":"2024-03-21","venue":"","city":"Nantes","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-02-08","registration_closing":"2024-03-18","registration_status":"closed","courseMode":"Onsite"},{"id":747,"name":"Introduction to Linux","shortName":"Introduction to Linux - BiRD","description":"Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell","homepage":"https://pf-bird.univ-nantes.fr/training/linux/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0605"],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-03-31T08:47:45.957937Z","type":"Training course","start_date":"2025-10-20","end_date":"2025-10-20","venue":"Faculté de Pharmacie - Salle 450, 4ème étage","city":"Nantes","country":"","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2025-10-15","registration_status":"closed","courseMode":"Onsite"}]}