{"count":668,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=420&ordering=city","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=380&ordering=city","results":[{"id":325,"name":"Formation librairie GATB","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-06-15","end_date":null,"venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":334,"name":"Phylogénie moléculaire","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-10-08","end_date":"2017-10-12","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":562,"name":"Introduction to Oxford Nanopore Technology data analyses 2023","shortName":"Introduction to ONT data analyses 2023","description":"This course offers an introduction to ONT data analysis. It includes 5 issues: basecalling, reads quality control, assemblies and polishing/correction, contig quality and structural variants detection.","homepage":"https://southgreenplatform.github.io/trainings//ont/","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3673","http://edamontology.org/topic_0196","http://edamontology.org/topic_3168"],"keywords":[],"prerequisites":["Linux and knowledge of NGS formats"],"openTo":"Everyone","accessConditions":"","maxParticipants":15,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:32:22.626277Z","type":"Training course","start_date":"2023-05-25","end_date":"2023-05-26","venue":"","city":"Montpellier","country":"France","geographical_range":"","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/733/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/545/?format=json"],"trainingMaterials":[{"id":1,"name":"SG-ONT-slides","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/SG-ONT-slides/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":563,"name":"RNA-Seq analysis 2023","shortName":"","description":"Introduction to RNA-Seq analysis","homepage":"https://southgreenplatform.github.io/trainings//rnaseq/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":20,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:35:29.445559Z","type":"Training course","start_date":"2023-05-31","end_date":"2023-06-01","venue":"","city":"Montpellier","country":"","geographical_range":"Local","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/735/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/775/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/564/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":702,"name":"Pandas : gérer, analyser, visualiser vos données efficacement - Session 2025","shortName":"","description":"Les objectifs de cette formation sont :\r\n- Importer, exporter, gérer, analyser des données tabulaires\r\n- Calculer des données dérivées\r\n- Combiner et interroger des données complexes\r\n- Calculer des statistiques descriptives des données\r\n- Visualiser et synthétiser les données sous formes graphiques","homepage":"https://cnrsformation.cnrs.fr/python-et-module-pandas-pour-gerer-et-analyser-donnees?mc=Pandas","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0091"],"keywords":["Python Language"],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"- Notions de base en informatique : fichiers, répertoire, organisation des données\r\n- Connaissance de base de la programmation en Python (activité régulière d'écriture de scripts en Python)\r\n- Maitrise d'un environnement de développement ou éditeur de programmes/scripts","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":6,"name":"CNRS formation entreprise","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=json"}],"organisedByOrganisations":[],"organisedByTeams":[{"id":7,"name":"ATGC","url":"https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=json"}],"logo_url":null,"updated_at":"2025-02-11T08:44:15.358414Z","type":"Training course","start_date":"2025-03-24","end_date":"2025-03-26","venue":"","city":"Montpellier","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-02-01","registration_closing":"2025-03-20","registration_status":"closed","courseMode":"Onsite"},{"id":565,"name":"Advanced HPC Trainings 2022","shortName":"","description":"This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.","homepage":"https://southgreenplatform.github.io/trainings//Advanced_HPC/","is_draft":false,"costs":["Free"],"topics":[],"keywords":["HPC","SLURM"],"prerequisites":["Linux - Basic Knowledge","Cluster"],"openTo":"Internal personnel","accessConditions":"Oprn to South Green close collaborators","maxParticipants":8,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":85,"name":"IRD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=json"}],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:31:56.530884Z","type":"Training course","start_date":"2023-05-18","end_date":"2023-05-19","venue":"","city":"Montpellier","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":567,"name":"Reproducible Research 2023","shortName":"","description":"The following topics and tools are covered in the course:\r\n\r\n    Data management\r\n    Project organisation\r\n    Git\r\n    Conda\r\n    Snakemake\r\n    Nextflow\r\n    R Markdown\r\n    Jupyter\r\n    Docker\r\n    Singularity\r\n\r\nAt the end of the course, students should be able to:\r\n\r\n    Use good practices for data analysis and management\r\n    Clearly organise their bioinformatic projects\r\n    Use the version control system Git to track and collaborate on code\r\n    Use the package and environment manager Conda\r\n    Use and develop workflows with Snakemake and Nextflow\r\n    Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n    Use Docker and Singularity to distribute containerized computational environments","homepage":"https://southgreenplatform.github.io/training_reproducible_research/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":13,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:35:44.983725Z","type":"Training course","start_date":"2023-06-14","end_date":"2023-06-16","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/734/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/733/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/774/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":276,"name":"Linux et script pour la bioinformatique","shortName":"","description":"Pour la plupart des tâches communes, le système Linux (libre et gratuit) peut avantageusement remplacer les systèmes d'exploitation propriétaires tels que Windows ou MacOS. Les énormes avantages de Linux sont sa gratuité, son évolution constante et l'inexistence des virus. Ce stage est une initiation à l'utilisation du système d'exploitation Linux et des lignes de commande pour les non informaticiens, ainsi qu'une initiation à l'écriture et l'emploi de scripts (petits programmes) pour faciliter l'analyse de données. Il s'agit pour des débutants ou quasi débutants Linux d'utiliser le système et d'acquérir l'autonomie nécessaire pour résoudre les besoins communs simples d'analyse par la combinaison des méthodes à travers des scripts.\n \n","homepage":"http://cnrsformation.cnrs.fr/stage-17285-Linux-et-script-pour-la-bioinformatique…","is_draft":false,"costs":[],"topics":[],"keywords":["Linux"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoires, etc.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-11-04","end_date":"2019-11-06","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":264,"name":"Bioinformatique pour le traitement de données de séquençage (NGS)","shortName":"","description":"\nLes objectifs sont :\n- Savoir choisir les outils d'analyse\n- Etre autonome pour effectuer un pipeline d'analyse\n- Comprendre les principes des méthodes d'analyse\n- Savoir manipuler les fichiers de séquences : préparation et filtration\n- Etre capable d'évaluer la qualité des données\n- Savoir analyser avec ou sans génome de référence\nhttps://cnrsformation.cnrs.fr/\n\n","homepage":"http://cnrsformation.cnrs.fr/stage-17010-Bioinformatique-pour-le-traitement-de-d…","is_draft":false,"costs":[],"topics":[],"keywords":["Methodology","NGS Data Analysis","Analysis of RNAseq data","Assembly of genomes and transcriptomes","Read alignment on genomes","Variant analysis","Complete genomes","Transcriptomics (RNA-seq)","Genomics (DNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoire..., notions du système linux et des lignes de commandes, niveau master\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-03-24","end_date":"2019-03-28","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":92,"name":"GCC 2017","shortName":"","description":"GCC2017 is the 8th annual gathering of the Galaxy community","homepage":"https://gcc2017.sciencesconf.org","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/logoGCC_2019.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Meeting","start_date":"2017-06-26","end_date":"2017-06-30","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":263,"name":"Phylogénie moléculaire","shortName":"","description":"\nLes objectifs sont :\n1. Acquérir des connaissances théoriques et pratiques en phylogénie moléculaire.\n2. Être autonome dans la conduite d'une analyse phylogénétique.\n3. Maîtriser le choix, le paramétrage et l'exploitation des résultats des programmes de phylogénie.\nhttps://cnrsformation.cnrs.fr/\n\n","homepage":"http://cnrsformation.cnrs.fr/stage-17007-Phylogenie-moleculaire-%28Montpellier%2…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Speciation dating","Selection Detection","Supertrees and Reconciliations","Phylogenomics","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"S'acquitter des frais d'inscription, être familiarisé avec les banques de données de séquences, avoir déjà utilisé les logiciels de base en bioinformatique, connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres), avoir des notions de programmation.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-10-06","end_date":"2019-10-10","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":179,"name":"ChIP-seq, RNA-seq et Hi-C : traitement, analyse et visualisation de données ","shortName":"","description":"Maîtriser les principales méthodes et outils d'analyse des données ChIP-seq, RNA-seq et Hi=C ","homepage":"https://cnrsformation.cnrs.fr/stage-18246-ChIP-seq%2C-RNA-seq-et-Hi-C--traitemen…","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":49,"name":"IGMM","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IGMM/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/logo-cnrs_0_2.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-06-26","end_date":"2018-06-29","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":226,"name":"Intiation aux analyses de données NGS - 1","shortName":"","description":"Une formation offrant des connaissances pluridisciplinaires dans le domaine de la bioinformatique...","homepage":"https://sns.edu.umontpellier.fr/fr/master-sciences-numerique-pour-la-sante-montp…","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":11,"name":"Parcours BCD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Parcours%20BCD/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/Logo_BCD-1-300x300.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-10-21","end_date":null,"venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":48,"name":"Bioinformatique pour le traitement de données de séquençage (NGS) ","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-03-26","end_date":"2017-03-30","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":327,"name":"Linux et script pour la bioinformatique ","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-11-06","end_date":"2017-11-07","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":63,"name":"Linux et script pour la bioinformatique","shortName":"","description":"","homepage":"http://cnrsformation.cnrs.fr/stage-17285-Linux-et-script-pour-la-bioinformatique…","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-05-02","end_date":"2017-05-03","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":326,"name":"Bioinformatique pour le traitement de données de séquençage (NGS) ","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-03-26","end_date":"2017-03-30","venue":"","city":"Montpellier","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":591,"name":"BIGomics, Génomique Comparative Biopolis","shortName":"","description":"Ce module vise à fournir une expérience d’analyse de données de génomique.\r\nLes technologies Next Generation Sequencing (NGS) ont conduit à une production massive de\r\ndonnées « Omiques » pour les plantes cultivées majeures, ce qui demande de nouvelles\r\napproches d’analyses haut débit. La connaissance de ces approches et des outils qui en\r\ndécoulent pour analyser la séquence et la structure des génomes, les annoter et caractériser\r\nleur diversité et leurs profils d’expression permet d’aborder des questions de recherche\r\nbiologique avancée sur la diversité et l’adaptation des plantes. Les espèces prises en\r\nconsidération sont des espèces phares des instituts de recherche agronomique de Montpellier\r\net font partie des cultures les plus importantes pour l’agriculture mondiale. Des plateformes\r\nd’outils bioinformatiques récents reposant sur des centres de calcul et de stockage haute\r\ncapacité, sont en place pour analyser des jeux de données originales permettant de mieux\r\ncomprendre comment les génomes de plantes évoluent et s’expriment. L’ensemble de ces\r\nconnaissances Findable, Accessible, Interoperable, Reusable car intégré dans des systèmes\r\nd’information peut soutenir l'identification de gènes responsables de caractères adaptatifs ou\r\nde production. La mobilisation de jeunes chercheurs sur ces sujets est primordiale tant la\r\ndemande est importante.\r\nLe module est structuré sous la forme de cours et de travaux tutorés avec la rencontre de\r\ngénéticiens et de bioinformaticiens permettant d’appréhender les formes variées des progrès\r\nen bioanalyse génomique. Il permet d’acquérir les lignes directrices pour l’accès, l'utilisation\r\net l'analyse de différents types de données omique (e.g. (épi)génomique, transcriptomique,\r\nprotéique, métabolique) en vue d’accélérer les recherches en génomique fonctionnelle et\r\nbiotechnologie des plantes.\r\nL’évaluation sera faite sur la base de la participation et de la qualité du projet proposé par\r\nl’étudiant en fin de module, individuellement ou en binôme, suivant les consignes détaillées en\r\ndébut de module","homepage":"https://elearning.cirad.fr/mod/resource/view.php?id=2339","is_draft":false,"costs":["Free to academics"],"topics":["http://edamontology.org/topic_3056","http://edamontology.org/topic_0797","http://edamontology.org/topic_0780","http://edamontology.org/topic_3810"],"keywords":["Phylogeny","Biodiversity","NGS Data Analysis"],"prerequisites":["Basic knowledge of R"],"openTo":"Everyone","accessConditions":"Inscription via un formulaire Moodle","maxParticipants":50,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/781/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":85,"name":"IRD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=json"},{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"},{"id":50,"name":"CIRAD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CIRAD/?format=json"}],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings/images/logo_southgreen_carre_6577134.png","updated_at":"2024-03-11T13:17:13.095567Z","type":"Training course","start_date":"2024-03-04","end_date":"2024-03-08","venue":"","city":"Montpellier","country":"France","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-01-24","registration_closing":"2024-02-09","registration_status":"closed","courseMode":"Onsite"},{"id":703,"name":"Python scripts for bioinformatics and Linux - Session 2025","shortName":"Scripts en Python pour la bioinformatique et environnement Linux","description":"OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils","homepage":"https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique","is_draft":false,"costs":["1200 €"],"topics":[],"keywords":["Linux","Python Language"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":1,"name":"CNRS formation entreprises","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=json"}],"organisedByTeams":[{"id":7,"name":"ATGC","url":"https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=json"}],"logo_url":null,"updated_at":"2025-02-11T08:50:54.103356Z","type":"Training course","start_date":"2025-11-04","end_date":"2025-11-07","venue":"","city":"Montpellier","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-02-01","registration_closing":"2025-10-20","registration_status":"closed","courseMode":"Onsite"},{"id":401,"name":"Bioinformatique pour le traitement de données de séquençage (NGS)","shortName":"","description":"- Comprendre les principes des méthodes d'analyse de données de séquençage à haut débit\n- Comprendre les résultats obtenus, les paramètres et leurs impacts sur les analyses\n- Savoir choisir et utiliser les principaux outils d'analyse\n- Être autonome pour utiliser un pipeline d'analyse\n- Savoir manipuler les fichiers de séquences : préparation et filtration- Savoir évaluer la qualité des données\n- Savoir analyser les résultats avec ou sans génome de référence\nPour s'incrire : https://cnrsformation.cnrs.fr/stage-20468-Bioinformatique-pour-le-traite...\n","homepage":"https://cnrsformation.cnrs.fr/stage-20468-Bioinformatique-pour-le-traitement-de-…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"PUBLICS :\n- Biologistes, professionnels des sciences du vivant ayant besoin d'analyser des données de séquençage\n- Ingénieurs ou chercheurs en bioinformatique\n- Bioanalystes\n \nPRÉREQUIS\n- Notions de base en informatique : fichiers, répertoire...\n- Notions du système linux et des lignes de commande\n- Niveau master\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":7,"name":"ATGC","url":"https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/ATGClogox120.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2020-09-20","end_date":"2020-09-24","venue":"","city":"Montpellier (34)","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null}]}