{"count":668,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=280&ordering=prerequisites","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=240&ordering=prerequisites","results":[{"id":46,"name":": Analyse in silico de structures 3D de protéines. 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Les progrès accomplis ont\r\nconsidérablement augmenté les possibilités expérimentales dans des domaines tels que la génomique (séquençage de\r\nnouveaux génomes, variants génétiques), la transcriptomique (expression génétique, ARNs non codants) et les\r\ninteractions ADN-protéine (immuno-précipitation de chromatine) et modifications de la chromatine. AVIESAN organise\r\nune troisième session de cette école dont les objectifs sont d’apporter aux biologistes des notions et une pratique leur\r\npermettant d’appréhender le traitement et l’analyse des données de séquençage à haut débit en utilisant un\r\nenvironnement logiciel convivial : Galaxy.\r\nL’école comportera des séminaires introductifs, des cours et des travaux pratiques consacrés à l’initiation au traitement\r\ndes données de transcriptome (RNA-seq), d’interactome (ChIP-seq) et de variations génomiques (SNP, CNV). Les\r\nparticipants disposant de données pourront discuter de leur plan d’analyse et effectuer les premières étapes de\r\ntraitement de leurs données au cours de la dernière journée.\r\nL’école est une initiation à l’utilisation des outils bioinformatiques dans un environnement Galaxy, plateforme dédiée à\r\nl’analyse des données de séquençage à haut débit. Cette formation est destinée aux biologistes (chercheurs,\r\ndoctorants, enseignants-chercheurs, ingénieurs, …) ayant déjà utilisé ou souhaitant utiliser ce type de données.","homepage":"https://aviesan.fr/fr/aviesan/accueil/toute-l-actualite/itmo-ggb-3e-ecole-de-bioinformatique-initiation-au-traitement-des-donnees-de-genomique-obtenues-par-sequencage-a-haut-debit","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":40,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/207/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"},{"id":13,"name":"Aviesan","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Aviesan/?format=json"}],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"},{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/EBA2016_0_1_1_0.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2014-10-05","end_date":"2014-10-10","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2014-06-27","registration_status":"closed","courseMode":"Onsite"},{"id":187,"name":"Building a FAIR Bioinformatics environment","shortName":"","description":"Building a FAIR Bioinformatics environment","homepage":"http://www.igst.it/nettab/2018/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/nettab304_bestLogo.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Workshop","start_date":"2018-10-22","end_date":"2018-10-24","venue":"","city":"Genoa, Italy","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":584,"name":"Comparaison de génomes microbiens (session 2024)","shortName":"Comparaison de génomes microbiens (2024)","description":"Objectifs pédagogiques\r\nConnaître les concepts et les principales méthodes bioinformatiques pour comparer un jeu de données de génomes microbiens. 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Savoir mettre en œuvre une comparaison de génomes et en interpréter les résultats.\r\n\r\nProgramme\r\n* Construction d’un jeu de données :\r\n* Téléchargement de données publiques\r\n* Evaluation de la qualité\r\n* Caractérisation de la diversité génomique\r\n* Stratégies de comparaison :\r\n* Construction de famille de protéines\r\n* Alignement de génomes complets\r\n* Analyse des résultats :\r\n   o Notion de core et pan-génome\r\n   o Notions élémentaires de phylogénomique\r\n   o Visualisation et interprétation des résultats\r\n* Mise en pratique sur un jeu de données bactériens, utilisation des logiciels dRep et Roary sous Galaxy.","homepage":"https://documents.migale.inrae.fr/trainings.html","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_3299","http://edamontology.org/topic_0622"],"keywords":["Comparative genomics"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":10,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"},{"id":88,"name":"BioinfOmics","url":"https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"}],"logo_url":"https://migale.inrae.fr/sites/default/files/migale-orange_0.png","updated_at":"2024-01-18T14:16:08.617035Z","type":"Training course","start_date":"2024-05-24","end_date":"2024-05-24","venue":"https://migale.inrae.fr/how-to-come","city":"Jouy-en-Josas","country":"France","geographical_range":"","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-01-08","registration_closing":"2024-05-10","registration_status":"closed","courseMode":"Onsite"},{"id":415,"name":"Introduction to Machine Learning Using R - 2021","shortName":"","description":"With the rise in high-throughput sequencing technologies, the volume of omics data has grown exponentially in recent times and a major issue is to mine useful knowledge from these data which are also heterogeneous in nature. Machine learning (ML) is a discipline in which computers perform automated learning without being programmed explicitly and assist humans to make sense of large and complex data sets. The analysis of complex high-volume data is not trivial and classical tools cannot be used to explore their full potential. Machine learning can thus be very useful in mining large omics datasets to uncover new insights that can advance the field of bioinformatics.\r\n\r\nThis 2-day course will introduce participants to the machine learning taxonomy and the applications of common machine learning algorithms to omics data. The course will cover the common methods being used to analyse different omics data sets by providing a practical context through the use of basic but widely used R libraries. The course will comprise a number of hands-on exercises and challenges where the participants will acquire a first understanding of the standard ML processes, as well as the practical skills in applying them on familiar problems and publicly available real-world data sets.","homepage":"https://fpsom.github.io/2021-06-ml-elixir-fr/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":8,"name":"Elixir","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2021-06-16","end_date":"2021-06-17","venue":"","city":"","country":"","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Online"},{"id":639,"name":"Introduction to Linux","shortName":"Introduction to Linux","description":"Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. 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Dans ce contexte, maîtriser quelques techniques basiques d’analyse de séquences peut se révéler d’une aide précieuse. \nL’objectif de cette formation est de présenter, au travers de l’utilisation de sites web spécialisés, quelques grands principes sur l’analyse de séquence. L’ensemble de la formation combine exposés théoriques (fondements méthodologiques des programmes) et applications pratiques (mise en relation des notions théoriques avec les paramètres des programmes et les résultats obtenus) pour permettre une utilisation autonome et critique de quelques logiciels d’analyse des séquences biologiques.\n\n\n\n","homepage":"https://c3bi.pasteur.fr/training-analyse-de-sequences/","is_draft":false,"costs":["Free"],"topics":[],"keywords":["Sequence analysis","Comparative genomics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-03-18","end_date":"2018-03-22","venue":"","city":"Institut Pasteur","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":282,"name":"Analyse de données metabarcoding","shortName":"","description":"Nous avons le plaisir de vous annoncer la tenue d'une formation sur l'analyse de données metabarcoding en mai 2018.\nCelle-ci vous proposera : \n- une formation complète à l'outil FROGS sous Galaxy\n- l'intervention de plusieurs experts du domaine avec exposés thématiques et tutoriaux \n- le tout sur 5j, du 14 au 18 mai prochain\nCette semaine thématique est co-organisée entre la cellule bioinformatique de l’ifremer à Brest, la plateforme MIGALE de Jouy et  la plate-forme ABiMS de Roscoff qui accueillera la formation.\nRetrouver les détails du programme ici : \nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nSi cette formation vous intéresse, merci de bien vouloir compléter le formulaire d'inscription (disponible dans le  lien ci-dessus).\n----------------------------------------\nWe are pleased to announce a training on metabarcoding data analysis in May 2018.\nThis one will propose to you:\n- complete training in the FROGS tool under Galaxy\n- the intervention of several experts in the field with thematic presentations and tutorials\n- all on  5days , from May 14 to 18\nThis theme week is co-organized with the IFREMER bioinformatic team (Brest) , the Migale bioinformatic platform(Jouy en Josas)  and  the ABiMS (Roscoff) bioinformatic platform and would take place in Roscoff..\nFind the details of the program here:\nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nIf you are interested in this training, please complete the registration form (see link above).\nTrainning will be in French with slides in English.\n","homepage":"http://tiny.ifremer.fr/formation-metabarcoding-2018","is_draft":false,"costs":[],"topics":[],"keywords":["Ecology","Biodiversity","Microbial ecology","NGS Data Analysis","Metagenomics","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Dates et lieu\nDu 14 au 18 mai 2018\nStation Biologique de Roscoff\nPublic visé\nDoctorants, ITA, chercheurs, enseignants et ingénieurs impliqués dans des projets concrets d’analyse de données de metabarcoding.\nPré-requis\nAvoir une connaissance de l'environnement Galaxy et un projet d'analyse de données de metabarcoding.\nNombre de participants attendus\n18 participants.\nEtant donné le nombre limité de places pour cette formation, une sélection des participants sera réalisée dans le cas où nous aurions reçu plus de 18 candidatures.\nFrais d'inscription\n600€ HT (tarif unique)\nCes frais d'inscription comprennent les déjeuners et diners qui seront pris au restaurant Gulf Stream à Roscoff.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/Pre%CC%81sentation1.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-05-13","end_date":"2018-05-17","venue":"","city":"ROSCOFF","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":784,"name":"Introduction aux bonnes pratiques pour des analyses reproductibles - 2026","shortName":"Good practices for better reproducibility of analyses 2026","description":"Objectifs pédagogiques\r\n\r\nL’objectif de cette formation est d’initier les apprenants aux bonnes pratiques pour la reproductibilité des analyses. Ils apprendront à rédiger des rapports d’analyse en R Markdown et à les déposer sur un dépôt GitHub. Les principes FAIR (faciles à trouver, accessibles, interopérables et réutilisables) et les bases de la rédaction de PGD (plans de gestion de données) seront également présentés. Durant la formation, nous utiliserons RStudio et GitHub.\r\n\r\nProgramme\r\n\r\nPrincipes et enjeux de la recherche reproductible\r\nUtilisation de GitHub\r\nGestion des versions d’un document\r\nRédaction de document computationnel\r\nPartage d’un rapport avec ses collaborateurs\r\nPrincipes FAIR et PGD","homepage":"https://documents.migale.inrae.fr/trainings.html","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0605"],"keywords":["Reproducibility"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":10,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"},{"id":88,"name":"BioinfOmics","url":"https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"}],"logo_url":"https://migale.inrae.fr/sites/default/files/migale-orange_0.png","updated_at":"2026-02-12T10:27:03.757755Z","type":"Training course","start_date":"2026-03-24","end_date":"2026-03-24","venue":"","city":"Jouy-en-Josas","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2026-03-10","registration_status":"closed","courseMode":"Onsite"},{"id":517,"name":"Initiation à R / R Initiation - Session 1 - 2023","shortName":"R - Init 2023-S1","description":"Objectifs\r\n- Savoir utiliser les commandes de base pour la manipulation et la description de jeux de données\r\ntabulés\r\n- Être capable de suivre le module R avancé\r\nProgramme\r\n- Introduction au langage R sous l’environnement Rstudio.\r\n- Premières additions.\r\n- Importation/exportation de données tabulées.\r\n- Manipulation d’objets plus complexes : vector, factor, matrice, data.frame, list\r\n- Fonctions mathématiques : sum, min, max, mean, mediane, log2\r\n- Fonctions propres à R pour la manipulation de tableaux : subset, apply, table, match, %in%\r\n- Les graphiques : plot, barplot, boxplot, points, lines …","homepage":"https://abims.sb-roscoff.fr/training/courses","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_2269"],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":16,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"}],"logo_url":"https://abims.sb-roscoff.fr/sites/default/files/abims.png","updated_at":"2023-02-22T08:41:32.349856Z","type":"Training course","start_date":"2023-05-31","end_date":"2023-05-31","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2023-02-22","registration_closing":"2023-04-30","registration_status":"closed","courseMode":"Onsite"},{"id":381,"name":"Linux For Dummies","shortName":"","description":" \nThis course offers an introduction to work with Linux. 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