{"count":686,"next":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=280&ordering=costs","previous":"https://catalogue.france-bioinformatique.fr/api/event/?format=json&limit=20&offset=240&ordering=costs","results":[{"id":472,"name":"Workflow4metabolomics - 2021 session postponed to 2022, march","shortName":"W4E 2021","description":"Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4Metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, FIA and NMR analysis. Such features are of major values for teaching computational metabolomics to experimenters, and previous courses using W4M since 2014 have been very successful.","homepage":"https://workflow4metabolomics.org/w4e2021","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-03-21","end_date":"2022-03-25","venue":"","city":"Toulouse","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":317,"name":"Annotation and Analysis of Procaryotic genomes using the MicroScope platform","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-09-24","end_date":"2017-09-28","venue":"","city":"Université d'Evry Val d'Essonne","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":633,"name":"Cluster - session 08/10/2024","shortName":"","description":"This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.","homepage":"http://bioinfo.genotoul.fr/index.php/events/cluster-2/","is_draft":false,"costs":["Priced","Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":[],"keywords":["Linux","Cluster"],"prerequisites":["Linux/Unix"],"openTo":"Everyone","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2024-06-05T09:19:16.493620Z","type":"Training course","start_date":"2024-10-08","end_date":"2024-10-08","venue":"","city":"castanet-tolosan","country":"France","geographical_range":"","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"],"trainingMaterials":[{"id":139,"name":"Cluster Slides - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20Slides%20-%20Genotoul-bioinfo/?format=json"},{"id":140,"name":"Cluster TP - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20TP%20-%20Genotoul-bioinfo/?format=json"}],"computingFacilities":[],"realisation_status":"past","registration_opening":"2024-06-05","registration_closing":"2024-10-01","registration_status":"closed","courseMode":"Online"},{"id":644,"name":"EBAII : Ecole de Bioinformatique \"Traitement des données de génomique obtenues par séquençage à haut débit\"  niveau intermédiaire - session 2025","shortName":"EBAII N2 session juin 2025","description":"Objectifs\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers thématiques en session parallèle (bulk RNA-seq, ChIP-seq, variants génomiques/GWAS), et abordera la visualisation et l’intégration des données. L’école vise à approfondir les concepts, à manipuler des outils informatiques avancés et à en interpréter les résultats.\r\nElle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=35","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_3391","http://edamontology.org/topic_3366","http://edamontology.org/topic_0092","http://edamontology.org/topic_3168","http://edamontology.org/topic_0091"],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS)  avec un niveau de base en ligne de commande, R, et (au choix) RNA-seq, ChIP-seq ou variants DNA-seq.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://www.sb-roscoff.fr/sites/www.sb-roscoff.fr/files/styles/large/public/images/station-biologique-roscoff-roscoff-4404.jpg","updated_at":"2025-01-09T13:06:41.575826Z","type":"Training course","start_date":"2025-06-01","end_date":"2025-06-06","venue":"","city":"Roscoff","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2025-01-08","registration_closing":"2025-03-01","registration_status":"closed","courseMode":"Onsite"},{"id":645,"name":"EBAII : Ecole de Bioinformatique \"Traitement des données de génomique obtenues par séquençage à haut débit\"  niveau débutant - session 2025","shortName":"EBAII N1 session novembre 2025","description":"Description : La formation EBAII IFB Aviesan de niveau 1 propose une expérience d'apprentissage intensive conçue pour les biologistes, qu'ils soient ingénieurs, doctorants, chercheurs, enseignants-chercheurs ou praticiens, qui sont confrontés à l'analyse de données NGS (Next-Generation Sequencing) mais qui ne disposent pas encore des compétences bioinformatiques nécessaires, ou qui cherchent à renforcer leurs compétences existantes.\r\n\r\nContenu : Cette formation est structurée autour d'une combinaison de sessions théoriques et d'ateliers pratiques. Les participants auront l'occasion d'explorer diverses thématiques, notamment le traitement de données de variants, ChIP-Seq, Bulk RNA-Seq, et Single-Cell RNA-Seq. De plus, ils recevront une introduction aux technologies \"long reads\".\r\n\r\nObjectifs généraux:\r\nAcquérir une compréhension approfondie des concepts liés à l'analyse de données NGS.\r\nMaîtriser les outils informatiques nécessaires pour effectuer ces analyses.\r\nInterpréter les résultats des analyses de données NGS.","homepage":"https://moodle.france-bioinformatique.fr/course/index.php?categoryid=9","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. La formation approfondira progressivement l’usage de ces environnements au fil des sessions thématiques.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"},{"id":14,"name":"Inserm","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Inserm/?format=json"}],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"},{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://www.sb-roscoff.fr/sites/www.sb-roscoff.fr/files/styles/large/public/images/station-biologique-roscoff-roscoff-4404.jpg","updated_at":"2025-09-09T12:27:03.315155Z","type":"Training course","start_date":"2025-11-16","end_date":"2025-11-21","venue":"","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":462,"name":"Principes FAIR dans un projet de bioinformatique - Session 2022","shortName":"FAIR bioinfo - session 2022","description":"L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.","homepage":"https://moodle.france-bioinformatique.fr/course/view.php?id=9&username=guest","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0769"],"keywords":["Computing Environments","NGS Sequencing Data Analysis","Workflow development"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":15,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"}],"organisedByOrganisations":[{"id":43,"name":"IFB-core","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=json"}],"organisedByTeams":[],"logo_url":"https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-06-13","end_date":"2022-06-15","venue":"","city":"Paris","country":"France","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-01-26","registration_closing":"2022-04-15","registration_status":"closed","courseMode":"Onsite"},{"id":436,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform - mars 2022","shortName":"MicroScope training mars 2022","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.","homepage":"https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0085","http://edamontology.org/topic_3301","http://edamontology.org/topic_0797"],"keywords":["Genome analysis","Sequence annotation"],"prerequisites":["Licence"],"openTo":"Everyone","accessConditions":"External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":15,"name":"Laboratory of Bioinformatics Analyses for Genomics and Metabolism","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=json"}],"organisedByOrganisations":[{"id":67,"name":"University Paris-Saclay","url":"https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=json"}],"organisedByTeams":[{"id":9,"name":"MicroScope","url":"https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=json"}],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-03-14","end_date":"2022-03-18","venue":"Evry University Paris Saclay","city":"Evry","country":"France","geographical_range":"International","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-01-24","registration_closing":"2022-02-14","registration_status":"closed","courseMode":"Onsite"},{"id":260,"name":"Linux/Unix","shortName":"","description":"This training presents the following points: how to access the platform, how to use a Unix environment, how to create and manipulate and transfer files with command line from your computer toward our cluster and vice versa. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/linux-2/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Linux","Cluster"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/bioinfo_logo-RVB_3.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-10-13","end_date":null,"venue":"","city":"Auzeville-Tolosane","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":259,"name":"Advanced sequence analysis","shortName":"","description":"https://cnrsformation.cnrs.fr/stage-19019-Analyse-avancee-de-sequences.h...\n","homepage":"https://cnrsformation.cnrs.fr/pdf/16148.pdf","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Data Analysis","Analysis of RNAseq data","Sequence Algorithm","Bioinformatics & Biomedical","Galaxy","Variant analysis","Transcriptomics (RNA-seq)","Genomics (DNA-seq)","Sequence annotation","Pattern matching","Multiple sequence alignment"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"CNRS fee-based training\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-05-13","end_date":null,"venue":"","city":"CBiB","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":658,"name":"Annotation and analysis of prokaryotic genomes using the MicroScope platform - March 2025","shortName":"MicroScope training - March 2025","description":"In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.","homepage":"https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0085","http://edamontology.org/topic_3301","http://edamontology.org/topic_0797"],"keywords":[],"prerequisites":["Licence"],"openTo":"Everyone","accessConditions":"External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":15,"name":"Laboratory of Bioinformatics Analyses for Genomics and Metabolism","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=json"}],"organisedByOrganisations":[{"id":71,"name":"University of Évry Val d'Essonne","url":"https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20%C3%89vry%20Val%20d'Essonne/?format=json"}],"organisedByTeams":[{"id":9,"name":"MicroScope","url":"https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=json"}],"logo_url":"https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg","updated_at":"2025-01-23T13:31:47.576548Z","type":"Training course","start_date":"2025-03-24","end_date":"2025-03-28","venue":"","city":"Evry","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2025-02-24","registration_status":"closed","courseMode":"Onsite"},{"id":350,"name":"Analyse de données métagénomiques 16S","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-06-19","end_date":"2017-06-22","venue":"","city":"Jouy en Josas","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":285,"name":"Metagenomic amplicon analysis/Frogs","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-02-19","end_date":"2017-02-22","venue":"","city":"Salle de formation Inra","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":199,"name":"Ecole single-cell 2019","shortName":"SincellTE 2019","description":"Transcriptomique et épigénomique en cellule unique: théorie et pratique","homepage":"https://ressources.france-bioinformatique.fr/fr/evenements/sincellTE_2019","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2019-02-03","end_date":"2019-02-08","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2018-11-15","registration_status":"closed","courseMode":"Onsite"},{"id":262,"name":"Galaxy : Reads alignment and SNP calling","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Data Analysis","Galaxy","Variant analysis","Genomics (DNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-10-07","end_date":"2018-10-08","venue":"","city":"Auzeville-Tolosane","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":177,"name":"Ecole thématique CNRS Single-cell 2018","shortName":"SincellTE 2018","description":"Transcriptomique et épigénomique en cellule unique: théorie et pratique","homepage":"https://ressources.france-bioinformatique.fr/fr/evenements/CNRS_2018","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2018-06-17","end_date":"2018-06-22","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2018-02-28","registration_status":"closed","courseMode":"Onsite"},{"id":422,"name":"Ecole thématique CNRS Single-Cell 2020 // Transcriptomique et épigénomique en cellule unique: théorie et pratique","shortName":"SincellTE 2020","description":"This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.","homepage":"https://ressources.france-bioinformatique.fr/fr/evenements/ecole-single-cell-2020","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":["Master","Autre (Diplôme universitaire, école d'ingénieur ...)"],"openTo":"Everyone","accessConditions":"None","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2_0.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2020-09-27","end_date":"2020-10-02","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2020-01-15","registration_status":"closed","courseMode":"Onsite"},{"id":349,"name":"Annotation formelle pour la fouille de texte","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-05-01","end_date":null,"venue":"","city":"Jouy en Josas","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":421,"name":"Principes FAIR dans un projet de bioinformatique - Session 2020","shortName":"FAIR bioinfo - 2020","description":"L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.","homepage":"https://ifb-elixirfr.github.io/IFB-FAIR-bioinfo-training/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3571"],"keywords":["Programming Languages & Computer Sciences","Computing Environments","NGS Sequencing Data Analysis","Workflow development"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"}],"organisedByOrganisations":[{"id":43,"name":"IFB-core","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=json"}],"organisedByTeams":[],"logo_url":"https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg","updated_at":"2023-10-12T11:46:03.444330Z","type":"Training course","start_date":"2020-08-31","end_date":"2020-09-02","venue":"","city":"","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"},{"id":348,"name":"Perl avancé","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2017-05-10","end_date":null,"venue":"","city":"Jouy en Josas","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":null},{"id":416,"name":"Principes FAIR dans un projet de bioinformatique - Session 2021","shortName":"FAIR bioinfo - 2021","description":"L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.","homepage":"https://ifb-elixirfr.github.io/IFB-FAIR-bioinfo-training/","is_draft":false,"costs":["Priced"],"topics":["http://edamontology.org/topic_0769"],"keywords":["Computing Environments","NGS Sequencing Data Analysis","Workflow development"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"}],"organisedByOrganisations":[{"id":43,"name":"IFB-core","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=json"}],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2021-06-28","end_date":"2021-06-30","venue":"Institut des Systèmes Complexes\r\n113 rue Nationale 75013\r\nParis\r\nMétros : Olympiades (L14) ou Nationale (L6)\r\nStation Vélib : place Nationale.","city":"Paris","country":"France","geographical_range":"National","trainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/697/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=json"],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Online"}]}