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Cette formation est destinée aux biologistes (chercheurs,\r\ndoctorants, enseignants-chercheurs, ingénieurs, …) ayant déjà utilisé ou souhaitant utiliser ce type de données.","homepage":"https://aviesan.fr/fr/aviesan/accueil/toute-l-actualite/itmo-ggb-3e-ecole-de-bioinformatique-initiation-au-traitement-des-donnees-de-genomique-obtenues-par-sequencage-a-haut-debit","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Biostatistics","Sequence analysis","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":40,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/207/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":3,"name":"IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=json"},{"id":13,"name":"Aviesan","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Aviesan/?format=json"}],"organisedByOrganisations":[{"id":53,"name":"AVIESAN","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":10,"name":"MIGALE","url":"https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=json"},{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"},{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"},{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/EBA2016_0_1_1_0.jpg","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2014-10-05","end_date":"2014-10-10","venue":"Station Biologique","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2014-06-27","registration_status":"closed","courseMode":"Onsite"},{"id":481,"name":"Statistiques avec R / Statistics with R - 2022 Session 1","shortName":"R - Stats - 2022 S1","description":"Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)","homepage":"http://abims.sb-roscoff.fr/training/courses","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_2269"],"keywords":[],"prerequisites":["Basic knowledge of R"],"openTo":"Everyone","accessConditions":"","maxParticipants":18,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":4,"name":"ABiMS","url":"https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=json"}],"logo_url":"https://abims.sb-roscoff.fr/sites/default/files/abims.png","updated_at":"2022-06-02T11:50:50.627601Z","type":"Training course","start_date":"2022-05-03","end_date":null,"venue":"https://www.sb-roscoff.fr/fr/station-biologique-de-roscoff/services/venir-a-la-sbr","city":"Roscoff","country":"","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-03-09","registration_closing":"2022-04-10","registration_status":"closed","courseMode":"Onsite"},{"id":541,"name":"Pipelines et méthodes bioinformatiques pour l'analyse de données de séquençage (NGS) - session Octobre 2023","shortName":"","description":"Bilille propose des formations en partenariat avec CNRS Formation Entreprises à destination des chercheur-euse-s, enseignant-e-s-chercheur-euse-s, ingénieur-e-s, technicien-ne-s en biologie et médecine. \r\n\r\nObjectifs :\r\n- Comprendre les principes des méthodes d'analyse de données de séquençage à haut débit (NGS)\r\n- Comprendre les paramètres des méthodes et leur impact sur les résultats\r\n- Apprendre à identifier les outils d'analyse en fonction du jeu de données\r\n- Être autonome pour analyser des données dans un gestionnaire de workflow comme Galaxy\r\n- Savoir manipuler les fichiers de lecture de séquençage : extraction, préparation, filtrage / nettoyage\r\n- Savoir évaluer la qualité des données de séquençage\r\n- Savoir analyser des données de séquençage de génomes (avec ou sans génome de référence) et prendre du recul sur le protocole expérimental\r\n- Savoir analyser des données de RNA-seq (avec ou sans génome de référence) et prendre du recul sur le protocole expérimental","homepage":"https://cnrsformation.cnrs.fr/pipelines-et-methodes-bioinformatiques-pour-analyse-de-donnees-de-sequencage","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":1,"name":"CNRS formation entreprises","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=json"}],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:37:10.962175Z","type":"Training course","start_date":"2023-10-16","end_date":"2023-10-20","venue":"","city":"Lille","country":"FRANCE","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2023-10-13","registration_status":"closed","courseMode":"Onsite"},{"id":405,"name":"4th Workshop Single-Cell / SincellTE 2022 / Single-Cell : Transcriptomics, Spatial and Multi-Omics","shortName":"SincellTE 2022","description":"This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.","homepage":"https://www.france-bioinformatique.fr/formation/single-cell-2022/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":["Master","Autre (Diplôme universitaire, école d'ingénieur ...)"],"openTo":"Everyone","accessConditions":"None","maxParticipants":30,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png","updated_at":"2022-09-15T13:10:14.790898Z","type":"Training course","start_date":"2022-01-09","end_date":"2022-01-14","venue":"Roscoff Biological Station\r\nPlace Georges Teissier","city":"Roscoff","country":"France","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2021-09-15","registration_status":"closed","courseMode":"Onsite"},{"id":538,"name":"Workshop nf-core et sarek - 8 et 9 Décembre 2022","shortName":"","description":"Dans le cadre du réseau métier ingénieur.e.s lillois, bilille organise un workshop de 2 jours autour de la communauté internationale et des pipelines de bioinformatique nf-core, les 8 et 9 Décembre sur le campus Cité Scientifique de l’Université de Lille, à Villeneuve d’Ascq.\r\n\r\nLe projet nf-core a été créé en 2018 afin de proposer et maintenir de manière collaborative des pipelines d’analyse de bioinformatique en Nextflow selon des standards stricts de qualité et de reproductibilité, tout en facilitant leur mise en œuvre sur la majorité des infrastructures de calcul. La communauté, très active, qui s’organise autour de cette collection de pipelines rassemble des scientifiques du monde entier, issus de parcours très divers.\r\n\r\nÀ l’occasion de cet atelier, nous accueillerons Maxime Garcia (Seqera labs, Stockholm), membre de l’équipe d’administration nf-core et développeur principal du pipeline d’analyse de variants génomique Sarek. Il présentera la communauté aux participant.e.s et les formera à l’utilisation de ces pipelines d’analyse, en alternant les présentations avec des mises en pratique. Il présentera également les outils de développement mis en place par nf-core pour permettre aux participant.e.s de contribuer aux outils existants et de proposer, si elles et ils le souhaitent, leurs propres pipelines selon les standards de la communauté.","homepage":"https://ums-plbs.univ-lille.fr/workshop-nf-core-et-sarek-avec-maxime-garcia","is_draft":false,"costs":["Free to academics"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Cet atelier s’adressant à un public averti en bioinformatique et/ou en biostatistiques, nous attendons des participant.e.s ayant déjà acquis une certaine familiarité avec les compétences suivantes :\r\n- Utilisation courante de la ligne de commande sous Unix\r\n- Utilisation des logiciels d’analyse de données de séquençage à haut débit\r\n- Utilisation de ressources de calcul intensif (cloud, cluster, …)\r\n- Connaissances de base sur les gestionnaires de workflow (Nextflow, SnakeMake, CWL, Galaxy,…)\r\n\r\nUne familiarité avec Nextflow, Conda et des gestionnaires de containers (Docker/Singularity) sera également utile, sans être toutefois obligatoire.","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/757/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:37:41.821856Z","type":"Training course","start_date":"2022-12-08","end_date":"2022-12-09","venue":"","city":"Villeneuve d'Ascq","country":"FRANCE","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":"2022-10-26","registration_closing":"2022-11-14","registration_status":"closed","courseMode":"Onsite"}]}