Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&ordering=-shortName
{ "count": 605, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=20&ordering=-shortName", "previous": null, "results": [ { "id": 613, "name": "Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session", "shortName": "WF4bioinfo 2024", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une journée de session pratique avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=29", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0769", "http://edamontology.org/topic_0091" ], "keywords": [ "FAIR", "Reproducibility", "Nextflow", "Snakemake" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/326/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/804/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [ { "id": 38, "name": "PB-IBENS", "url": "https://catalogue.france-bioinformatique.fr/api/team/PB-IBENS/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2024-03-28T10:04:12.722566Z", "type": "Training course", "start_date": "2024-10-14", "end_date": "2024-10-16", "venue": "", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-01", "registration_closing": "2024-06-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 472, "name": "Workflow4metabolomics - 2021 session postponed to 2022, march", "shortName": "W4E 2021", "description": "Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4Metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, FIA and NMR analysis. Such features are of major values for teaching computational metabolomics to experimenters, and previous courses using W4M since 2014 have been very successful.", "homepage": "https://workflow4metabolomics.org/w4e2021", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-03-21", "end_date": "2022-03-25", "venue": "", "city": "Toulouse", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 607, "name": "Train-the-Trainer", "shortName": "TtT", "description": "The programme objective is to give instructors tools and tips for providing an enriching learning experience to trainees, irrespective of topic, and to include best-practice guidance on course and training material development.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=25", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 25, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/639/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 6, "name": "Elixir-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir-FR/?format=api" }, { "id": 63, "name": "TAGC", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/TAGC/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/961/course/section/152/logo_TtT_MRS_def.png", "updated_at": "2024-03-21T15:53:33.771360Z", "type": "Training course", "start_date": "2024-07-01", "end_date": "2024-07-02", "venue": "CNRS - Délégation Provence et corse, 31 Chemin Joseph Aiguier, 13009 Marseille.", "city": "Marseille", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-20", "registration_closing": "2024-04-22", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 405, "name": "4th Workshop Single-Cell / SincellTE 2022 / Single-Cell : Transcriptomics, Spatial and Multi-Omics", "shortName": "SincellTE 2022", "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.", "homepage": "https://www.france-bioinformatique.fr/formation/single-cell-2022/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [ "Master", "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Everyone", "accessConditions": "None", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png", "updated_at": "2022-09-15T13:10:14.790898Z", "type": "Training course", "start_date": "2022-01-09", "end_date": "2022-01-14", "venue": "Roscoff Biological Station\r\nPlace Georges Teissier", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2021-09-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 422, "name": "Ecole thématique CNRS Single-Cell 2020 // Transcriptomique et épigénomique en cellule unique: théorie et pratique", "shortName": "SincellTE 2020", "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/ecole-single-cell-2020", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [ "Master", "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Everyone", "accessConditions": "None", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2020-09-27", "end_date": "2020-10-02", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2020-01-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 199, "name": "Ecole single-cell 2019", "shortName": "SincellTE 2019", "description": "Transcriptomique et épigénomique en cellule unique: théorie et pratique", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/sincellTE_2019", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-02-03", "end_date": "2019-02-08", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2018-11-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 177, "name": "Ecole thématique CNRS Single-cell 2018", "shortName": "SincellTE 2018", "description": "Transcriptomique et épigénomique en cellule unique: théorie et pratique", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/CNRS_2018", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-06-17", "end_date": "2018-06-22", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2018-02-28", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 572, "name": "Analyse de données métagénomiques shotgun / shotgun metagenomics (2024 session)", "shortName": "Shotgun metagenomics (2024)", "description": "Objectifs pédagogiques\r\n\r\nCette formation est dédiée à l’analyse de données métagénomiques procaryotes de type « shotgun » issues de la technologie de séquençage Illumina. Nous présenterons les étapes bioinformatiques nécessaires pour nettoyer les données brutes et les caractériser d’un point de vue taxonomique. Nous aborderons ensuite les différentes stratégies à employer pour assembler les reads et obtenir des comptages sur des gènes prédits. Enfin nous présenterons quelques outils pour obtenir une annotation fonctionnelle des échantillons. A l’issue des 2 jours de formation, les stagiaires connaîtront le périmètre, les avantages et limites des analyses de données de séquençage shotgun. Ils seront capables d’utiliser les outils présentés sur les jeux de données de la formation. L’ensemble des TP se déroulera sur l’infrastructure de Migale et nécessite une pratique courante de la ligne de commande.\r\n\r\nProgramme\r\n\r\nIntroduction générale sur les données métagénomiques\r\nAssignation taxonomique\r\nNettoyage des données brutes\r\nAssemblage / Binning\r\nPrédiction de gènes procaryotes\r\nAnnotation fonctionnelle\r\nConclusion, limites des méthodes", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_3697" ], "keywords": [ "Metagenomics" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-17T10:55:12.140373Z", "type": "Training course", "start_date": "2024-03-18", "end_date": "2024-03-19", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-03-04", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 694, "name": "Analyse de données métagénomiques shotgun : 2025", "shortName": "Shotgun metagenomics", "description": "Objectifs pédagogiques\r\n\r\nCette formation est dédiée à l’analyse de données métagénomiques procaryotes de type « shotgun » issues de la technologie de séquençage Illumina. Nous présenterons les étapes bioinformatiques nécessaires pour nettoyer les données brutes et les caractériser d’un point de vue taxonomique. Nous aborderons ensuite les différentes stratégies à employer pour assembler les reads et obtenir des comptages sur des gènes prédits. Enfin nous présenterons quelques outils pour obtenir une annotation fonctionnelle des échantillons. A l’issue des 2 jours de formation, les stagiaires connaîtront le périmètre, les avantages et limites des analyses de données de séquençage shotgun. Ils seront capables d’utiliser les outils présentés sur les jeux de données de la formation. L’ensemble des TP se déroulera sur l’infrastructure de Migale et nécessite une pratique courante de la ligne de commande.\r\n\r\nProgramme\r\n\r\nIntroduction générale sur les données métagénomiques\r\nAssignation taxonomique\r\nNettoyage des données brutes\r\nAssemblage / Binning\r\nPrédiction de gènes procaryotes\r\nAnnotation fonctionnelle\r\nConclusion, limites des méthodes", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_3697" ], "keywords": [ "Metagenomics" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:37:58.423739Z", "type": "Training course", "start_date": "2025-05-06", "end_date": "2025-05-07", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-01-22", "registration_closing": "2025-04-21", "registration_status": "open", "courseMode": "Online" }, { "id": 571, "name": "Développement d’une application avec R Shiny (session 2024)", "shortName": "Shiny application development (2024)", "description": "Objectifs pédagogiques\r\n\r\nÀ l’issue de la formation, les stagiaires connaîtront les principes de bases et le fonctionnement du package “Shiny”. Ils et elles seront capables de créer leurs premières applications web interactives à partir de scripts R. Les solutions de déploiement d’applications Shiny seront également abordées.\r\n\r\nProgramme\r\n\r\nPrincipes généraux et fonctionnement d’une application Shiny\r\nDéveloppement d’applications Shiny\r\nDéploiement d’applications Shiny", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "Shiny" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-17T10:46:26.358781Z", "type": "Training course", "start_date": "2024-03-14", "end_date": "2024-03-14", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/175/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-02-29", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 505, "name": "2e Ecole Thématique de Bioinformatique Intégrative / Integrative Bioinformatics Training School", "shortName": "Second session of ETBII", "description": "La bioinformatique intégrative est une thématique scientifique pluridisciplinaire récente qui combine et analyse des données biologiques provenant de différentes sources dans le but d’obtenir une compréhension holistique des systèmes biologiques. \r\nL’Institut Français de Bioinformatique (IFB) organise une école thématique à destination des bioinformaticiens/biostatisticiens/bioanalystes souhaitant acquérir des compétences théoriques et pratiques en bioinformatique intégrative.\r\nCette école rassemble une équipe pédagogique de 10 personnes et pourra accueillir 30 participants maximum pour sa deuxième édition.\r\nL’ensemble de la formation reposera sur l’utilisation des ressources de calcul et environnements de travail de l’Institut Français de Bioinformatique (https://www.france-bioinformatique.fr/calcul-et-stockage/).\r\n\r\nPublic visé\r\nCette formation est ouverte à tous les scientifiques (ingénieurs, chercheurs dans des plateformes ou équipes de recherche) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.\r\n\r\nPré-requis\r\nConnaissances de base en Unix/shell, R, Python\r\nAutonomie dans la gestion de son poste de travail (installation de librairies et utilisation des environnements de packaging type conda)", "homepage": "https://www.france-bioinformatique.fr/formation/etbii/", "is_draft": false, "costs": [ "770 TTC pour les académiques et 1540 TTC pour les privés" ], "topics": [ "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0091" ], "keywords": [ "Methodology", "Biostatistics", "Biological network inference and analysis", "Dimension reduction", "Semantic web", "Integration of heterogeneous data", "Data Integration", "Tool integration" ], "prerequisites": [ "Linux and knowledge of NGS formats", "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "Cette formation est ouverte à toute la communauté, en priorité aux bioinformaticien·ne·s des plateformes membres et équipes associées IFB souhaitant contribuer à la constitution de matériel pédagogique pour se préparer au montage de futures formations sur ce thème.", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/Logo_ETBII_Couleurs.png", "updated_at": "2023-10-25T13:31:05.639302Z", "type": "Training course", "start_date": "2024-03-24", "end_date": "2024-03-29", "venue": "", "city": "Fréjus", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/770/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/750/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/657/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/722/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/146/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/721/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2023-12-01", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 703, "name": "Python scripts for bioinformatics and Linux - Session 2025", "shortName": "Scripts en Python pour la bioinformatique et environnement Linux", "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils", "homepage": "https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique", "is_draft": false, "costs": [ "1200 €" ], "topics": [], "keywords": [ "Linux", "Python Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": null, "updated_at": "2025-02-11T08:50:54.103356Z", "type": "Training course", "start_date": "2025-11-04", "end_date": "2025-11-07", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-02-01", "registration_closing": "2025-10-20", "registration_status": "open", "courseMode": "Onsite" }, { "id": 518, "name": "Statistiques avec R / Statistics with R - Session 1 - 2023", "shortName": "R - Stats 2023 S1", "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:27:31.911754Z", "type": "Training course", "start_date": "2023-06-01", "end_date": "2023-06-01", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-04-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 481, "name": "Statistiques avec R / Statistics with R - 2022 Session 1", "shortName": "R - Stats - 2022 S1", "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-05-03", "end_date": null, "venue": "https://www.sb-roscoff.fr/fr/station-biologique-de-roscoff/services/venir-a-la-sbr", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-03-09", "registration_closing": "2022-04-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 686, "name": "Développement d’une application avec R Shiny : session 2025", "shortName": "R Shiny 2025", "description": "Objectifs pédagogiques\r\n\r\nÀ l’issue de la formation, les stagiaires connaîtront les principes de bases et le fonctionnement du package “Shiny”. Ils et elles seront capables de créer leurs premières applications web interactives à partir de scripts R. Les solutions de déploiement d’applications Shiny seront également abordées.\r\n\r\nProgramme\r\n\r\nPrincipes généraux et fonctionnement d’une application Shiny\r\nDéveloppement d’applications Shiny\r\nDéploiement d’applications Shiny", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "Shiny" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:03:21.860021Z", "type": "Training course", "start_date": "2025-03-14", "end_date": "2025-03-14", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "ongoing", "registration_opening": "2025-01-22", "registration_closing": "2025-02-27", "registration_status": "closed", "courseMode": "Online" }, { "id": 612, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3308" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Linux/Unix", "Cluster", "Langage R de base" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-03-26T14:25:27.655655Z", "type": "Training course", "start_date": "2024-05-14", "end_date": "2024-05-17", "venue": "", "city": "Castanet Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "training RNASEQ Bioinfo part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASEQ%20Bioinfo%20part/?format=api" }, { "id": 136, "name": "training RNASeq biostat part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASeq%20biostat%20part/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-24", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 640, "name": "RNASeq Analysis", "shortName": "RNASeq Analysis", "description": "Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.", "homepage": "https://pf-bird.univ-nantes.fr/training/rnaseq/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Familiarity with basic Linux commands.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-08-22T15:55:32.866676Z", "type": "Training course", "start_date": "2024-10-02", "end_date": "2024-10-03", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 603, "name": "RNASeq Analysis", "shortName": "RNASeq Analysis", "description": "Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.", "homepage": "https://pf-bird.univ-nantes.fr/training/rnaseq/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Familiarity with basic Linux commands.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-02-19T09:37:13.928843Z", "type": "Training course", "start_date": "2024-03-20", "end_date": "2024-03-21", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-03-18", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 480, "name": "Initiation à R / R Initiation - 2022 Session 1", "shortName": "R Initiation - 2022 S1", "description": "Objectifs\r\n- Savoir utiliser les commandes de base pour la manipulation et la description de jeux de données\r\ntabulés\r\n- Être capable de suivre le module R avancé\r\nProgramme\r\n- Introduction au langage R sous l’environnement Rstudio.\r\n- Premières additions.\r\n- Importation/exportation de données tabulées.\r\n- Manipulation d’objets plus complexes : vector, factor, matrice, data.frame, list\r\n- Fonctions mathématiques : sum, min, max, mean, mediane, log2\r\n- Fonctions propres à R pour la manipulation de tableaux : subset, apply, table, match, %in%\r\n- Les graphiques : plot, barplot, boxplot, points, lines …", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 16, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-05-02", "end_date": null, "venue": "https://www.sb-roscoff.fr/fr/station-biologique-de-roscoff/services/venir-a-la-sbr", "city": "Roscoff", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-03-09", "registration_closing": "2022-04-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 618, "name": "Initiation à R / R Initiation - 2024", "shortName": "R - Init - 2024", "description": "Objectifs\r\n- Pour une personne qui découvre R : savoir utiliser R de manière autonome et comprendre les principes de\r\nbase\r\n- Être capable de suivre le module Manipulation et visualisation de données avec R\r\n\r\nProgramme\r\n- Introduction à l'IDE Rstudio\r\n- Créer un projet et un script\r\n- Manipulation de données de base\r\n- Structures de données : qu'est-ce qu'une variable, un type, un objet ?\r\n- Utiliser des fonctions de packages externes", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 16, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-01-23T13:52:40.706132Z", "type": "Training course", "start_date": "2024-05-22", "end_date": "2024-05-22", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-29", "registration_closing": "2024-04-21", "registration_status": "closed", "courseMode": "Onsite" } ] }
