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            "updated_at": "2025-07-16T11:44:35.206666Z",
            "type": "Training course",
            "start_date": "2025-12-10",
            "end_date": "2025-12-12",
            "venue": "http://www.idris.fr/info/contacts/alleridris.html",
            "city": "ORSAY",
            "country": "France",
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            "registration_closing": "2025-09-15",
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        },
        {
            "id": 724,
            "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - December 14-16 2025",
            "shortName": "Variant calling",
            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
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            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
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            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2025-05-09T13:20:15.323810Z",
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            "id": 723,
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            "homepage": "https://bioinfo.genotoul.fr/index.php/events/onelineperl/",
            "is_draft": false,
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Perl Langage"
            ],
            "prerequisites": [
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
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            ],
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                {
                    "id": 37,
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            "organisedByTeams": [
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                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
                }
            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2025-05-09T13:11:54.546597Z",
            "type": "Training course",
            "start_date": "2025-12-08",
            "end_date": "2025-12-08",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-05-09",
            "registration_closing": "2025-12-01",
            "registration_status": "closed",
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        {
            "id": 722,
            "name": "HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ? December 1er 2025",
            "shortName": "Nextflow/nf-core",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/how-to-run-a-nf-core-nextflow-workflow-on-genotoul-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_0769"
            ],
            "keywords": [
                "Nextflow"
            ],
            "prerequisites": [
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
            ],
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            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 15,
                    "name": "MIAT",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
                }
            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2025-05-09T13:20:57.741969Z",
            "type": "Training course",
            "start_date": "2025-12-01",
            "end_date": "2025-12-01",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [
                {
                    "id": 143,
                    "name": "workflows nf-core",
                    "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/workflows%20nf-core/?format=api"
                }
            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2025-05-09",
            "registration_closing": "2025-11-24",
            "registration_status": "closed",
            "courseMode": "Online"
        },
        {
            "id": 721,
            "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - 24-27 November  2025",
            "shortName": "RNASeq bioinfo / biostat",
            "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_0203"
            ],
            "keywords": [
                "NGS Data Analysis",
                "Expression"
            ],
            "prerequisites": [
                "Langage R de base",
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/\r\nNon-academic\r\nfor non-academic: 550€ + 20% taxes (TVA) per day\t€2 200,00\t\r\n\r\nAcademic non-INRAE\r\nfor academic but non-INRAE: 170 € + 20% taxes (TVA) per day\t€680,00\t\r\n\r\nINRAE\r\nfor INRAE's staff: 150 € no VAT charged per day;\t€600,00",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api",
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            "elixirPlatforms": [],
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                    "id": 15,
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                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api"
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            ],
            "organisedByTeams": [
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                    "id": 33,
                    "name": "Genotoul-biostat",
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                },
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                    "id": 22,
                    "name": "Genotoul-bioinfo",
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                }
            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2025-05-09T13:21:03.858451Z",
            "type": "Training course",
            "start_date": "2025-11-24",
            "end_date": "2025-11-27",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
            "trainingMaterials": [
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                    "id": 135,
                    "name": "training RNASEQ Bioinfo part",
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                },
                {
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            ],
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            "registration_closing": "2025-11-17",
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        },
        {
            "id": 720,
            "name": "Cluster - November 19 2025",
            "shortName": "",
            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
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            "costs": [
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
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            "keywords": [
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            ],
            "prerequisites": [
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            ],
            "openTo": "Everyone",
            "accessConditions": "You need to register (via the website) and pay 170 euros a day for academic and 550 euros a day for a private.",
            "maxParticipants": 12,
            "contacts": [
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            ],
            "elixirPlatforms": [],
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            ],
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            "updated_at": "2025-05-09T13:20:51.071696Z",
            "type": "Training course",
            "start_date": "2025-11-19",
            "end_date": "2025-11-19",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [
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                    "name": "Cluster Slides",
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                },
                {
                    "id": 140,
                    "name": "TP Cluster",
                    "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/TP%20Cluster/?format=api"
                }
            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2025-05-09",
            "registration_closing": "2025-11-12",
            "registration_status": "closed",
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