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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
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            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_2885"
            ],
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            "prerequisites": [
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                "Cluster"
            ],
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            "organisedByOrganisations": [
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                    "id": 37,
                    "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api"
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            ],
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                    "id": 22,
                    "name": "Genotoul-bioinfo",
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                }
            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2026-02-02T09:47:33.747044Z",
            "type": "Training course",
            "start_date": "2026-04-13",
            "end_date": "2026-04-14",
            "venue": "",
            "city": "Castanet-Tolosan",
            "country": "France",
            "geographical_range": "",
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            "realisation_status": "past",
            "registration_opening": "2026-01-14",
            "registration_closing": "2026-02-27",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 66,
            "name": "Formation MIGALE - Initiation à Perl",
            "shortName": "",
            "description": "Initiation à la programmation.  Identifier les possibilités offertes par l’écriture de quelques lignes de code...",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
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            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo-inra_0_0_0.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-05-09",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
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            "registration_opening": null,
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        },
        {
            "id": 796,
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            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
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                "Priced"
            ],
            "topics": [
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                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_0797"
            ],
            "keywords": [],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
            "maxParticipants": 12,
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            "sponsoredBy": [
                {
                    "id": 15,
                    "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api"
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            ],
            "organisedByOrganisations": [
                {
                    "id": 67,
                    "name": "University Paris-Saclay",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=api"
                }
            ],
            "organisedByTeams": [
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                    "id": 9,
                    "name": "MicroScope",
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            ],
            "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2019/06/MicroScope_logo-300x210.png",
            "updated_at": "2026-03-26T14:14:19.457285Z",
            "type": "Training course",
            "start_date": "2026-12-07",
            "end_date": "2026-12-11",
            "venue": "",
            "city": "Evry",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2026-03-26",
            "registration_closing": "2026-11-09",
            "registration_status": "open",
            "courseMode": "Onsite"
        }
    ]
}