Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=80&ordering=-description
{ "count": 605, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=100&ordering=-description", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=60&ordering=-description", "results": [ { "id": 387, "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe", "shortName": "", "description": "This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 557, "name": "Advanced HPC Trainings 2023", "shortName": "", "description": "This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.", "homepage": "https://southgreenplatform.github.io/trainings//Advanced_HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "HPC", "SLURM" ], "prerequisites": [ "Linux - Basic Knowledge", "Cluster" ], "openTo": "Internal personnel", "accessConditions": "Oprn to South Green close collaborators", "maxParticipants": 7, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 85, "name": "IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:32:09.166517Z", "type": "Training course", "start_date": "2023-05-22", "end_date": "2023-05-23", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/732/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/774/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 565, "name": "Advanced HPC Trainings 2022", "shortName": "", "description": "This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.", "homepage": "https://southgreenplatform.github.io/trainings//Advanced_HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "HPC", "SLURM" ], "prerequisites": [ "Linux - Basic Knowledge", "Cluster" ], "openTo": "Internal personnel", "accessConditions": "Oprn to South Green close collaborators", "maxParticipants": 8, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 85, "name": "IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:31:56.530884Z", "type": "Training course", "start_date": "2023-05-18", "end_date": "2023-05-19", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 635, "name": "Introduction To Python - session 16/10/2024 - 17/10/2024", "shortName": "Introduction To Python - session 16/10/2024 - 17/10/2024", "description": "The Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).\r\n\r\nThis training focuses on practice. It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).", "homepage": "https://bioinfo.genotoul.fr/index.php/events/python/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3307" ], "keywords": [ "Python Language" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-06-10T12:33:57.629350Z", "type": "Training course", "start_date": "2024-10-16", "end_date": "2024-10-17", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "trainingMaterials": [ { "id": 142, "name": "Introduction to python", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Introduction%20to%20python/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-05", "registration_closing": "2024-10-08", "registration_status": "closed", "courseMode": "Online" }, { "id": 612, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3308" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Linux/Unix", "Cluster", "Langage R de base" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-03-26T14:25:27.655655Z", "type": "Training course", "start_date": "2024-05-14", "end_date": "2024-05-17", "venue": "", "city": "Castanet Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "training RNASEQ Bioinfo part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASEQ%20Bioinfo%20part/?format=api" }, { "id": 136, "name": "training RNASeq biostat part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASeq%20biostat%20part/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-24", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 607, "name": "Train-the-Trainer", "shortName": "TtT", "description": "The programme objective is to give instructors tools and tips for providing an enriching learning experience to trainees, irrespective of topic, and to include best-practice guidance on course and training material development.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=25", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 25, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/639/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 6, "name": "Elixir-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir-FR/?format=api" }, { "id": 63, "name": "TAGC", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/TAGC/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/961/course/section/152/logo_TtT_MRS_def.png", "updated_at": "2024-03-21T15:53:33.771360Z", "type": "Training course", "start_date": "2024-07-01", "end_date": "2024-07-02", "venue": "CNRS - Délégation Provence et corse, 31 Chemin Joseph Aiguier, 13009 Marseille.", "city": "Marseille", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-20", "registration_closing": "2024-04-22", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 642, "name": "A Hackathon for microbial data analysis workflow FAIRification", "shortName": "", "description": "The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.\r\n\r\nIn short, the objectives of this hackathon are to:\r\n- Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability\r\n- Implement robust tests to ensure workflow reliability and accuracy\r\n- Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability\r\n- Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards\r\n- Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab\r\n\r\nThis hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! Experts and IWC experienced users will be participating in the hackathon to support and explain the requirements during the event.", "homepage": "https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3697", "http://edamontology.org/topic_3941", "http://edamontology.org/topic_3174", "http://edamontology.org/topic_0769", "http://edamontology.org/topic_0121" ], "keywords": [ "Galaxy", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" }, { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" }, { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": null, "updated_at": "2024-11-22T09:55:01.514886Z", "type": "Workshop", "start_date": "2024-11-21", "end_date": "2024-11-21", "venue": "Online with a\r\n • a Zoom room, open the whole week\r\n • 2 stand-ups to accommodate different time zones\r\n • Several brainstorming meetings\r\n • microGalaxy Matrix chat for communication", "city": "", "country": "", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-10-10", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 272, "name": "Training on annotation of transposable elements", "shortName": "", "description": "The objectives of this training are: \nTo acquire knowledge on transposable elements\nTo achieve annotation of transposable elements in the genome using REPET pipelines\nTo be autonomous on your own data.\nProgram\nOpening presentations on transposable elements and their annotation\nStrategies of repeat annotation\nREPET pipelines overview and practices \nPost-analyze tools overview and practices\n \n", "homepage": "https://urgi.versailles.inra.fr/Platform/Training/Training-on-annotation-of-tran…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Bioinformatics and Plant Genomics", "Sequence analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "This training is dedicated to biologists and/or bioinformaticians (10 pers. max)\nCost : 150€\nRegistration and information by mail to: urgi-contact@inra.fr\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-06-10", "end_date": "2018-06-12", "venue": "", "city": "INRA-URGI, Centre de Versailles", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 567, "name": "Reproducible Research 2023", "shortName": "", "description": "The following topics and tools are covered in the course:\r\n\r\n Data management\r\n Project organisation\r\n Git\r\n Conda\r\n Snakemake\r\n Nextflow\r\n R Markdown\r\n Jupyter\r\n Docker\r\n Singularity\r\n\r\nAt the end of the course, students should be able to:\r\n\r\n Use good practices for data analysis and management\r\n Clearly organise their bioinformatic projects\r\n Use the version control system Git to track and collaborate on code\r\n Use the package and environment manager Conda\r\n Use and develop workflows with Snakemake and Nextflow\r\n Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n Use Docker and Singularity to distribute containerized computational environments", "homepage": "https://southgreenplatform.github.io/training_reproducible_research/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - 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Scripting languages are used on a daily basis in life science labs in order to mine huge data sets produced by high-throughput devices. This two-week course will give participants basic knowledge in python and state-of-the-art machine learning methods to analyze their own data sets.\r\nDescription:\r\nThis course is intended for PhD students, engineers and research scientists willing to acquire knowledge in scientific programming. Throughout the course, we will use Python language to lead participants from the basics of computer programming to more advanced techniques such as practical machine learning techniques.", "homepage": "https://www.pasteur.fr/fr/programmation-scientifique-python", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "Toolkit", "Tool integration", "Workflow development", "Parallelization", "Développements technologiques de l‘Information et de la Communication" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "being an internal personnel", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 12, "name": "INCEPTION", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/INCEPTION/?format=api" } ], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2024-06-10T12:40:00.372956Z", "type": "Training course", "start_date": "2017-03-26", "end_date": 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