Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=620&ordering=-registration_opening
{ "count": 675, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=640&ordering=-registration_opening", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=600&ordering=-registration_opening", "results": [ { "id": 571, "name": "Développement d’une application avec R Shiny (session 2024)", "shortName": "Shiny application development (2024)", "description": "Objectifs pédagogiques\r\n\r\nÀ l’issue de la formation, les stagiaires connaîtront les principes de bases et le fonctionnement du package “Shiny”. Ils et elles seront capables de créer leurs premières applications web interactives à partir de scripts R. Les solutions de déploiement d’applications Shiny seront également abordées.\r\n\r\nProgramme\r\n\r\nPrincipes généraux et fonctionnement d’une application Shiny\r\nDéveloppement d’applications Shiny\r\nDéploiement d’applications Shiny", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "Shiny" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-17T10:46:26.358781Z", "type": "Training course", "start_date": "2024-03-14", "end_date": "2024-03-14", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/175/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-02-29", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 570, "name": "Introduction au language R / Introduction to R langage (2024 session)", "shortName": "Introduction to R language (2024)", "description": "Objectifs pédagogiques :\r\nÀ l’issue de la formation, les stagiaires connaîtront les principales fonctionnalités du langage R et ses principes. Ils seront capables de les appliquer pour effectuer des calculs ou des représentations graphiques simples. Ils seront de plus autonomes pour manipuler leurs tableaux de données.\r\nAttention : ce module n’est ni un module de statistique, ni un module d’analyse statistique des données.\r\n\r\nProgramme :\r\n* Structures et manipulation de données\r\n* Principaux éléments du langage de programmation (boucle, fonctions…)\r\n* Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot)", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "R Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-17T10:35:28.255758Z", "type": "Training course", "start_date": "2024-03-11", "end_date": "2024-03-12", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-02-26", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 573, "name": "Introduction aux bonnes pratiques pour des analyses reproductibles (2024 session)", "shortName": "Good practices for better reproducibility of analyses (2024)", "description": "Objectifs pédagogiques\r\n\r\nL’objectif de cette formation est d’initier les apprenants aux bonnes pratiques pour la reproductibilité des analyses. Ils apprendront à rédiger des rapports d’analyse en R Markdown et à les déposer sur un dépôt GitHub. Les principes FAIR (faciles à trouver, accessibles, interopérables et réutilisables) et les bases de la rédaction de PGD (plans de gestion de données) seront également présentés. Durant la formation, nous utiliserons RStudio et GitHub.\r\n\r\nProgramme\r\n\r\nPrincipes et enjeux de la recherche reproductible\r\nUtilisation de GitHub\r\nGestion des versions d’un document\r\nRédaction de document computationnel\r\nPartage d’un rapport avec ses collaborateurs\r\nPrincipes FAIR et PGD", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "Reproducibility" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-17T11:04:05.427843Z", "type": "Training course", "start_date": "2024-03-21", "end_date": "2024-03-21", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-03-07", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 590, "name": "Formation d'initiation à la plateforme de stockage d'imagerie OMERO", "shortName": "Formation d'initiation à OMERO", "description": "Cette session d'introduction a pour objectif la prise en main d'OMERO et le chargement d'images vers l'instance OMERO hébergée au Mésocentre Clermont Auvergne, service de la plateforme AuBi.\r\n\r\nQu'est-ce qu'OMERO ?\r\nOMERO est une plateforme logicielle permettant de visualiser, de gérer et d'annoter des données d'images scientifiques. OMERO vous permet d'importer et d'archiver vos images, de les annoter et de baliser vos images, d'enregistrer vos protocoles expérimentaux et d'exporter vos images dans de nombreux formats. Il vous permet également de collaborer avec des collègues en créant des groupes d'utilisateurs.\r\n\r\nPourquoi utiliser OMERO ?\r\nC'est très pratique ! Une fois vos données importées, vous n'avez plus à vous soucier des montages réseau et des structures de dossiers. Vos données sont consultables, vous pouvez les annoter, les visualiser, effectuer des flux de travail simples d'analyse d'images, les partager avec des collaborateurs et générer des figures de niveau publication, le tout directement depuis votre navigateur web.\r\n\r\nComment l'utiliser ?\r\nIl existe deux interfaces principales pour OMERO : un client de bureau (OMERO.insight) et une page web (OMERO.web). Elles ont toutes deux des caractéristiques similaires mais pas identiques. Venez découvrir ces outils lors de cette formation AuBi !\r\n\r\nPour cela, il est indispensable d'être équipé d'un ordinateur portable sur lequel omero insight sera installé en amont de la formation et d'avoir un compte actif au Mésocentre Clermont Auvergne qui vous permettra ensuite de vous connecter sur omero.web.\r\n\r\nInscription dans la limite de 10 personnes auprès de la plateforme CLIC ou de la plateforme AuBi.", "homepage": "https://mesocentre.uca.fr/projets-associes/plateforme-aubi", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3383" ], "keywords": [ "Microscopy", "Bioimaging", "FAIR" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "Demander l'ouverture d'un compte au Mésocentre Clermont Auvergne\r\nVenir avec un ordinateur portable et une connexion à Eduroam", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/780/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg", "updated_at": "2024-02-01T14:24:51.515020Z", "type": "Training course", "start_date": "2024-01-26", "end_date": "2024-01-26", "venue": "Bâtiment Turing, Salle A013", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/780/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-02", "registration_closing": null, "registration_status": "open", "courseMode": "Onsite" }, { "id": 568, "name": "Formation Principes FAIR dans un projet de bioinformatique - Session 1 - Strasbourg", "shortName": "FAIR-Bioinfo-Strasbourg_session1", "description": "Cette formation sur 3 jours est destinée à des bioinformaticiens et biostatisticiens souhaitant acquérir des compétences théoriques et pratiques sur les principes \"FAIR\" (Facile à trouver, Accessible, Interopérable, Réutilisable) appliqués à un projet d'analyse et/ou de développement.", "homepage": "https://sygefor.reseau-urfist.fr/#/training/10387/12552/66e8217a2c8c491a60eeed9f5a167db3", "is_draft": false, "costs": [ "Free to academics" ], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "FAIR", "Snakemake", "Docker" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Academics", "maxParticipants": 14, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 79, "name": "IBMP", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IBMP/?format=api" }, { "id": 83, "name": "IGBMC", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IGBMC/?format=api" } ], "organisedByTeams": [ { "id": 14, "name": "BiGEst", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=api" } ], "logo_url": null, "updated_at": "2023-12-20T15:48:19.995591Z", "type": "Training course", "start_date": "2024-04-09", "end_date": "2024-04-11", "venue": "", "city": "Strasbourg", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-12-20", "registration_closing": "2024-03-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 540, "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module Analyses RNA-seq (sous Galaxy)- session Octobre 2023", "shortName": "", "description": "Bilille, la plateforme de bioinformatique, biostatistique et bioanalyse de la métropole lilloise, propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé des modules suivants, à la carte : \r\n- Analyses ADN\r\n- Analyses de variants\r\n- Métagénomique\r\n- Analyses ChIP-seq\r\n- Analyses RNA-seq\r\nLes fiches descriptives sont accessibles sur le site de bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\n\r\nLes objectifs du module Analyses RNA-seq sont :\r\n- Découvrir les fonctionnalités courantes de Galaxy, et savoir les utiliser.\r\n- Savoir réaliser une analyse transcriptomique par RNA-seq avec ou sans (de novo) génome de référence à l’aide du portail Galaxy\r\n- Avoir un regard critique sur la qualité des lectures obtenues par le séquenceur\r\n- Connaître et savoir paramétrer les outils nécessaires à l’analyse\r\n- Savoir réaliser une analyse différentielle de données RNA-seq à partir d’une table de comptage (quantifiant les lectures alignées) à l’aide du portail Galaxy\r\n- Avoir un regard critique sur les résultats d’une analyse différentielle\r\n- Comprendre différentes méthodes de normalisation et les contextes d’utilisation correspondants.", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free to academics" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "La première journée du module permettra aux personnes n’ayant pas suivi le module Analyses ADN du cycle de rattraper les pré-requis nécessaires à la suite de la formation (initiation à Galaxy, nettoyage et qualités des séquences, mapping). Des concepts basiques en statistique (moyenne, variance, p-value) sont nécessaires pour être à l’aise dans la quatrième journée.", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 66, "name": "University of Lille", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Lille/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:37:20.758462Z", "type": "Training course", "start_date": "2023-10-03", "end_date": "2023-10-06", "venue": "", "city": "Villeneuve d'Ascq", "country": "FRANCE", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-06-15", "registration_closing": "2023-07-13", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 537, "name": "New session of FAIR_bioinfo_@_AuBi", "shortName": "New session of FAIR_bioinfo", "description": "Introduction aux bonnes pratiques en bio-informatique afin de pérenniser son travail de recherche.\r\n\r\nCette formation permet de découvrir les bonnes pratiques dans le cadre d’un travail nécessitant des approches programmatiques (statistiques, programmation d’outils, analyses de données biologiques). Elle s’inscrit aussi dans l’aspect science-ouverte afin de rendre plus facilement disponible et pérenne le travail bio-informatique. Après une introduction aux pratiques FAIR axées notamment sur les notions de reproductibilité et de répétabilité du code, plusieurs approches seront abordées: les bonnes pratiques de partage et gestion des versions des outils utilisés ; la gestion des environnements de travail (conda, docker, singularity) ; découverte du gestionnaire de workflow Snakemake : et enfin la documentation du code avec Rmarkdown et Jupyter.", "homepage": "https://mesocentre.uca.fr/actualites/pratiques-fair-en-bioinformatique-pour-des-analyses-reproductibles", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3068", "http://edamontology.org/topic_3307", "http://edamontology.org/topic_0091" ], "keywords": [ "Methodology", "Programming Languages & Computer Sciences", "Cloud", "Linux", "Snakemake", "Docker", "R" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Having an account on Mesocentre Clermont Auvergne Infrastructure", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 94, "name": "University Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Clermont%20Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2023-06-14T10:22:28.365980Z", "type": "Training course", "start_date": "2023-07-10", "end_date": "2023-07-17", "venue": "Turing Building\r\nRoom A09", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-06-14", "registration_closing": "2023-06-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 533, "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy", "shortName": "NGS Galaxy", "description": "Connaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS).\r\nSavoir effectuer un alignement sur un génome de référence, un assemblage de novo d'un génome bactérien.", "homepage": "https://migale.inrae.fr/trainings/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "NGS Data Analysis", "Data visualization", "NGS" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2023-05-26T14:16:02.157083Z", "type": "Training course", "start_date": "2023-06-15", "end_date": "2023-06-15", "venue": "Access to the INRAE center reception\r\n By car\r\n\r\n Take the N118 from the Paris rotary Porte de Saint-Cloud > Pont de Sèvres > Follow direction Bordeaux/Nantes – take exit 6A Jouy-en-Josas/Bièvres\r\n Take the N12 from Plaisir > Follow direction Paris exit 1 towards the D53\r\n Take the A12 Rambouillet > Jouy – take exit 2 via the D446\r\n\r\n By the RER (train to the suburbs)\r\n\r\nRER C Line: Get off at the Jouy-en-Josas station. The research center is a 15 minute walk (you must walk towards the town hall (Mairie de Jouy).\r\n\r\n From Chatelet-Les Halles, take the RER B line until the Massy-Palaiseau station (32 min.) then take the RER C line CIME train (14 min.)\r\n From Versailles-Chantier RER C station take the VICK or VITY train (8 min.)\r\n From the Bibliothèque François Mitterand RER C station, take the CIME train (1 hour)\r\n\r\n From the Orly Airport\r\n\r\nTake the bus « Paris par le train » to the Pont de Rungis RER C train station. Then take the RER C train CIME towards Versailles Chantiers. Get off at the Jouy-en-Josas station.\r\n\r\nStops of the “Paris par le train” bus :\r\n\r\n Paris-Orly Sud : porte C, stop 6\r\n Paris-Orly Ouest : porte G on the Arrivals level.\r\n\r\n From the Charles de Gaulle - Roissy Airport\r\n\r\nTo go from the Paris-Charles de Gaulle airport to Jouy-en-Josas you may take :\r\n\r\n the RER B train towards St Remy les Chevreuses. Get off at the Massy Palaiseau station\r\n the RER C train towards Versailles Chantiers (CIME trains). Get off at Jouy-en-Josas.", "city": "JOUY EN JOSAS Cedex", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-05-25", "registration_closing": "2023-06-01", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 534, "name": "Manipulation de données avec R : introduction à tidyverse", "shortName": "Introduction à tidyverse", "description": "A l’issue de la formation, les stagiaires seront capables de :\r\n- utiliser les principales fonctions des packages dplyr et tidyr de l’écosystème du « tidyverse »\r\n- lire les données et les ranger dans un format « tidy »\r\n- manipuler les données : filtrer, sélectionner, trier, produire des résultats par groupe, fusionner plusieurs tables\r\n- mettre en forme et pivoter les tables de données", "homepage": "https://migale.inrae.fr/trainings", "is_draft": false, "costs": [], "topics": [], "keywords": [ "R Language" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2023-05-26T14:19:19.327877Z", "type": "Training course", "start_date": "2023-06-19", "end_date": "2023-06-20", "venue": "Access to the INRAE center reception\r\n By car\r\n\r\n Take the N118 from the Paris rotary Porte de Saint-Cloud > Pont de Sèvres > Follow direction Bordeaux/Nantes – take exit 6A Jouy-en-Josas/Bièvres\r\n Take the N12 from Plaisir > Follow direction Paris exit 1 towards the D53\r\n Take the A12 Rambouillet > Jouy – take exit 2 via the D446\r\n\r\n By the RER (train to the suburbs)\r\n\r\nRER C Line: Get off at the Jouy-en-Josas station. The research center is a 15 minute walk (you must walk towards the town hall (Mairie de Jouy).\r\n\r\n From Chatelet-Les Halles, take the RER B line until the Massy-Palaiseau station (32 min.) then take the RER C line CIME train (14 min.)\r\n From Versailles-Chantier RER C station take the VICK or VITY train (8 min.)\r\n From the Bibliothèque François Mitterand RER C station, take the CIME train (1 hour)\r\n\r\n From the Orly Airport\r\n\r\nTake the bus « Paris par le train » to the Pont de Rungis RER C train station. Then take the RER C train CIME towards Versailles Chantiers. Get off at the Jouy-en-Josas station.\r\n\r\nStops of the “Paris par le train” bus :\r\n\r\n Paris-Orly Sud : porte C, stop 6\r\n Paris-Orly Ouest : porte G on the Arrivals level.\r\n\r\n From the Charles de Gaulle - Roissy Airport\r\n\r\nTo go from the Paris-Charles de Gaulle airport to Jouy-en-Josas you may take :\r\n\r\n the RER B train towards St Remy les Chevreuses. Get off at the Massy Palaiseau station\r\n the RER C train towards Versailles Chantiers (CIME trains). Get off at Jouy-en-Josas.", "city": "JOUY EN JOSAS Cedex", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-05-25", "registration_closing": "2023-06-05", "registration_status": "closed", "courseMode": "Online" }, { "id": 532, "name": "Summer School Multi-omics Data Analysis and Integration", "shortName": "", "description": "Researchers often have access to or generate multiple omics data (RNAseq, metabolomics, lipidomics, proteomics…) within a single study. Although each omics data is usually analyzed individually, combining complementary data can yield a better understanding of the mechanisms involved in biological processes. Several integrative approaches are now available to combine such data, coming essentially from two families of methods, namely multivariate statistical analyses and network-based approaches. During this summer school both methodologies will be covered, introducing RGCCA and mixOmics for multivariate analyses and WGCNA and SNF for network-based strategies. To get meaningful biological information, the interpretation of statistical results needs to be done contextualizing them in the available biological knowledge. To address this major step we need to be able to access and interrogate databases. We will harness this subject introducing semantic web and knowledge graphs in the context of metabolic networks.\r\n\r\nDuring the School, significant time will be devoted to hands-on and the program will be divided into three phases / topics:\r\n- Multivariate statistical analyses (Instructors: Arnaud Gloaguen & Jimmy Vandel)\r\n- Network-based approaches (Instructors: Morgane Térézol & Marie-Galadriel Brière)\r\n- Results contextualisation: an introduction to metabolic models, web semantic and knowledge graphs (Instructors: Jean-Clément Gallardo, Maxime Delmas & Marco Pagni)\r\n\r\nThe participants will work in groups and shortly present the application of what they have learned to their own project.", "homepage": "https://www.sib.swiss/training/course/20230903_MODAI", "is_draft": false, "costs": [ "650 EUR/CHF for academics", "1000 EUR/CHF for for-profit companies" ], "topics": [ "http://edamontology.org/topic_0089", "http://edamontology.org/topic_2269", "http://edamontology.org/topic_0602" ], "keywords": [ "Biological network inference and analysis", "Multivariate analyses", "Semantic web", "Knowledge representation" ], "prerequisites": [ "experience with at least one omic technique", "basic statistics", "R programming" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/768/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 100, "name": "SIB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SIB/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://www.sib.swiss/training/images/sib_logo.svg", "updated_at": "2023-05-17T08:59:43.914253Z", "type": "Training course", "start_date": "2023-09-03", "end_date": "2023-09-08", "venue": "Centre de Vacances et Colloques Paul Langevin", "city": "Aussois", "country": "France", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-23", "registration_closing": "2023-06-01", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 530, "name": "Short-Read Alignment And Small Size Variants Calling - session 13/11/2023 - 14/11/2023", "shortName": "", "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_2885", "http://edamontology.org/topic_0102" ], "keywords": [], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-06-10T12:36:44.820913Z", "type": "Training course", "start_date": "2023-11-13", "end_date": "2023-11-14", "venue": "", "city": "Toulouse-Auzeville", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-11-08", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 529, "name": "Cluster - session 18/04/2023", "shortName": "", "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/", "is_draft": false, "costs": [ "Priced", "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Linux", "Cluster" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2023-05-17T10:03:57.925413Z", "type": "Training course", "start_date": "2023-04-18", "end_date": "2023-04-18", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-04-12", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 528, "name": "LINUX - session 17/04/2023", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2023-05-17T10:04:05.719947Z", "type": "Training course", "start_date": "2023-04-17", "end_date": "2023-04-17", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-04-12", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 531, "name": "Improve your command line skills by learning a few words of Perl - session 28/11/2023", "shortName": "", "description": "This “Perl one-liners” training session is organized by the Sigenae platform. Perl one-liners are small and awesome Perl programs that fit in a single line of code and perform many operations such as replacing of text, spacing, deleting, calculation, manipulation in files and many more. This training will allow you to discover the power of Perl on the command line and learn how to use it to automate your file manipulations and command line generation with classical file formats such as tabulated text, fastq, sam/bam, and vcf.\r\n\r\nThis training lasts one day and is focused on practice. It consists of 3 parts with a large variety of exercises:\r\n\r\nIntroduction to Perl and its characteristics: Perl is a widely used programming language for data processing and task automation. We will introduce the main characteristics of Perl and discuss why it is particularly suited for biologists who want to manipulate files and generate command lines.\r\nPerl on the command line: we will show how to use Perl on the command line to perform common tasks, such as searching and replacing strings, merging files, and loop over lists of files.\r\nConcrete examples: we will present several concrete examples drawn from biology, such as extracting information from genomic sequence files, converting files between different formats, and generating command lines for data biology tools.\r\n \r\nThe session will take place in the room ‘salle de formation MIAT’ at INRAE center of Toulouse-Auzeville.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/onelineperl/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Perl Langage" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2023-05-17T10:03:41.882770Z", "type": "Training course", "start_date": "2023-11-28", "end_date": "2023-11-28", "venue": "", "city": "Toulouse-Auzeville", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-11-22", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 508, "name": "Principes FAIR dans un projet de bioinformatique - Session 2023", "shortName": "FAIR_bioinfo_2023", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=19", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Computing Environments", "NGS Sequencing Data Analysis", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2023-10-16T08:28:12.972795Z", "type": "Training course", "start_date": "2023-10-09", "end_date": "2023-10-11", "venue": "Institut des Systèmes Complexes", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/697/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-03", "registration_closing": "2023-05-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 525, "name": "12ème Ecole de Bioinformatique AVIESAN-IFB-Inserm", "shortName": "EBAII 2023 niv1", "description": "La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de quatres ateliers thématiques en session parallèle (RNA-seq, ChIP-seq/ATAC-seq, variants DNA-seq, single-cell), et inclura une introduction à l’intégration des données, une ouverture aux technologies “long reads”.\r\n\r\nL’école vise à introduire les concepts et à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur plateforme.", "homepage": "https://ifb-elixirfr.github.io/EBAII/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Biostatistics", "Sequence analysis", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. 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