Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=600&ordering=-courseMode
{ "count": 675, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=620&ordering=-courseMode", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=580&ordering=-courseMode", "results": [ { "id": 795, "name": "Manipulating & Visualizing Data with R", "shortName": "R - DataViz", "description": "Objectifs\r\n- Importer, structurer, transformer et exporter un tableau de données avec R\r\n- Générer des figures de qualité pour, par exemple, une publication scientifique\r\n\r\nProgramme\r\n- Introduction au tidyverse (metapackage pour manipuler, visualiser et analyser des données)\r\n- Import et export de tableaux de données (csv, excel, google sheet, etc.)\r\n- Manipulation de tableaux de données avec dplyr et tidyr (filtre, aggregation, jointure)\r\n- Manipulation de chaînes de caractères et de dates avec stringr et lubridate\r\n- Introduction aux concepts de visualisation de données\r\n- Apprendre à utiliser ggplot2 grâce à esquisse\r\n- Partager ses résultats avec Quarto", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0092" ], "keywords": [ "Programming Languages & Computer Sciences" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2026-03-24T10:29:53.748731Z", "type": "Training course", "start_date": "2026-06-23", "end_date": "2026-06-23", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/865/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-03-11", "registration_closing": "2026-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 761, "name": "Initiation à Galaxy / Galaxy Initiation", "shortName": "Galaxy Initiation", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [ "Galaxy" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/821/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2026-03-24T10:31:37.559664Z", "type": "Training course", "start_date": "2026-06-15", "end_date": "2026-06-15", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/272/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-03-11", "registration_closing": "2026-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 768, "name": "Principes FAIR & Git Initiation", "shortName": "FAIR & GIT - Initiation", "description": "Objectifs\r\n- Principes FAIR :\r\n Connaître les principes FAIR\r\n Être capable de prendre en compte les principes FAIR dans l'ensemble des étapes d'un projet impliquant la \r\n collecte et/ou l'analyse de données\r\n- Initiation à Git :\r\n Savoir définir ce qu’est un outil de gestion de version\r\n Être capable d’initialiser un entrepôt Git pour un projet\r\n Être capable de définir quels fichiers inclure/exclure d’un projet\r\n Savoir enregistrer localement une nouvelle version pour un projet\r\n Savoir partager des modifications locales avec tous les contributeurs d’un projet\r\n Savoir gérer des modifications en parallèle en utilisant les branches\r\n Connaître les bonnes pratiques pour contribuer à projet tiers\r\n\r\nProgramme : \r\n- Principes FAIR\r\n Présentation des principes FAIR\r\n Exemples de bonnes pratiques dans la gestion des données : description, organisation du stockage, \r\n traitements et analyses, mise en accès\r\n- Initiation à Git\r\n Présentation des avantages de la gestion de versions (projets individuels & projets collaboratifs)\r\n Présentation des principes de fonctionnement de Git\r\n Présentation et mise en œuvre des commandes principales de Git (clone, checkout, add, rm, commit, merge,\r\n push, pull) ; en ligne de commande ou en utilisant une interface graphique (GitHub et GitLab)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Reproducibility" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "Pre-registration required.", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/821/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2026-03-24T10:31:49.448012Z", "type": "Training course", "start_date": "2026-06-16", "end_date": "2026-06-16", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/865/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-03-11", "registration_closing": "2026-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 796, "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform", "shortName": "MicroScope training - December 2026", "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.", "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0085", "http://edamontology.org/topic_3301", "http://edamontology.org/topic_0797" ], "keywords": [], "prerequisites": [ "Licence" ], "openTo": "Everyone", "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 15, "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api" } ], "organisedByOrganisations": [ { "id": 67, "name": "University Paris-Saclay", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=api" } ], "organisedByTeams": [ { "id": 9, "name": "MicroScope", "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api" } ], "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2019/06/MicroScope_logo-300x210.png", "updated_at": "2026-03-26T14:14:19.457285Z", "type": "Training course", "start_date": "2026-12-07", "end_date": "2026-12-11", "venue": "", "city": "Evry", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2026-03-26", "registration_closing": "2026-11-09", "registration_status": "open", "courseMode": "Onsite" }, { "id": 797, "name": "FAIR Bioinfo Grand-Ouest", "shortName": "FAIR Bioinfo Grand-Ouest", "description": "Les plateformes de bioinformatique du réseau Biogenouest (ABiMS, BiRD, GenOuest et SeBiMER) vous proposent une formation “FAIR-bioinfo” à destination des bioinformaticien.ne.s, bioanalystes et biostatisticien.ne.s.\r\n\r\nLors de cette formation, nous vous présenterons les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) et leur application dans les projets d’analyse et de développement.\r\nDes présentations théoriques suivies d’utilisations pratiques de plusieurs outils permettant d’améliorer la reproductibilité des analyses seront proposées.", "homepage": "https://framaforms.org/inscription-formation-fair-bioinfo-grand-ouest-2026-1772636058", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0091" ], "keywords": [ "FAIR", "Bioinformatics" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/202/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/106/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/529/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/54/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 17, "name": "GenOuest", "url": "https://catalogue.france-bioinformatique.fr/api/team/GenOuest/?format=api" }, { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" }, { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://ifb-elixirfr.gitlab.io/training/fair-bioinfo/sessions/2026-05-fair-bioinfo-grand-ouest/_imgs/biogenouest.png", "updated_at": "2026-03-27T10:15:52.835260Z", "type": "Training course", "start_date": "2026-05-19", "end_date": "2026-05-20", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-03-26", "registration_closing": "2026-04-07", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 747, "name": "Introduction to Linux", "shortName": "Introduction to Linux - BiRD", "description": "Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell", "homepage": "https://pf-bird.univ-nantes.fr/training/linux/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2026-03-31T08:47:45.957937Z", "type": "Training course", "start_date": "2025-10-20", "end_date": "2025-10-20", "venue": "Faculté de Pharmacie - Salle 450, 4ème étage", "city": "Nantes", "country": "", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2025-10-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 799, "name": "Construction and analysis of eukaryotic pangenome graphs - 30 novembre 2026", "shortName": "", "description": "This training session is organized by the Genotoul-Bioinfo platform. This 2 days long course is dedicated to the construction and the analysis of eukaryotic pangenome graphs.\r\n\r\nWe will first present the concept of graph-based pangenome, then build one. We will then apply several tools for its analysis: use annotation, call variants, extract sub-graphs, visualize the graph, map reads, genotype individuals, and perform a GWAS on the graph. The different formats will also be presented.\r\n\r\nBy the end of the course, trainees will be familiar with the topic, and able to run the major tools made to build an exploit a pangenome graph.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/pangenome/", "is_draft": false, "costs": [ "Non-academic for non-academic: 1100€ + 20% taxes (TVA)", "INRAE for INRAE's staff: 300 € no VAT charged", "Academic non-INRAE for academic but non-INRAE: 340 € + 20% taxes (TVA)" ], "topics": [ "http://edamontology.org/topic_3796", "http://edamontology.org/topic_0625" ], "keywords": [ "Pangenomic" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2026-04-20T08:13:35.712988Z", "type": "Training course", "start_date": "2026-11-30", "end_date": "2026-12-02", "venue": "", "city": "Castanet-Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2026-04-20", "registration_closing": "2026-10-16", "registration_status": "open", "courseMode": "Onsite" }, { "id": 800, "name": "LINUX - 28 septembre 2026", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2026-04-20T08:19:30.914358Z", "type": "Training course", "start_date": "2026-09-28", "end_date": "2026-09-28", "venue": "", "city": "Castanet-Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 137, "name": "Linux slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 138, "name": "Linux TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2026-04-20", "registration_closing": "2026-08-14", "registration_status": "open", "courseMode": "Onsite" }, { "id": 802, "name": "Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability 2026", "shortName": "Galaxy avancée 2026", "description": "Join us for an intensive, week-long, in-person training designed to elevate your Galaxy expertise to new heights. This workshop is tailored for data scientists, advanced Galaxy users, and team leaders who need to scale, automate, and publish their data analysis workflows for batch processing and production-level applications.\r\n\r\nOver five days, you’ll embark on a comprehensive journey through Galaxy’s advanced capabilities:\r\n\r\nMonday: Introduction & Workflow Development\r\n\r\nStart with a welcome and icebreaker to foster collaboration, followed by a brief overview of Galaxy and its workflow features. Dive into hands-on workflow development, where you’ll learn to design clean, efficient workflows, customize them with parameters, and generate user-friendly workflow reports—combining theory with practical application.\r\n\r\nTuesday: Workflow FAIRification, Documentation, and Export\r\n\r\nBegin with a recap of Day 1, then explore UseGalaxy.fr and its unique features. Learn to annotate workflows with metadata, apply best practices for FAIR compliance, and implement tests to ensure reliability. Publish your workflows to WorkflowHub and Dockstore via the IWC. Develop high-resolution workflow visualizations and create interactive tutorials using a “Choose Your Own Tutorial” approach. Finally, master workflow export by creating RO-Crates for reproducibility and submitting workflows to LifeMonitor for performance tracking.\r\n\r\nWednesday: Scaling Workflows & Galaxy Using Command-Line and API\r\n\r\nStart with a recap and real-world examples of large-scale Galaxy projects. Learn to execute workflows from the command line using Planemo, automate batch processing with shell scripts, and analyze performance for efficiency. Discover how to scale Galaxy use with BioBlend, designing Python scripts for batch workflow execution and evaluating scalability. The day concludes with an introduction to the “Bring Your Own Work” session.\r\n\r\nThursday: Bring Your Own Work (BYOW)\r\n\r\nDedicate the day to applying your new skills to your own projects. With guidance from trainers, refine your workflows, troubleshoot challenges, and implement solutions using your personal data. Collaborate with peers, document your progress, and optimize your workflows to leave with actionable results for your research.\r\n\r\nFriday: Storage, Data Management, Recap, and Closing\r\n\r\nThe final half-day begins with a recap of the week’s progress, followed by a session on “Bring Your Own Storage”, exploring how to integrate personal or institutional storage with Galaxy. Learn about managing databases in Galaxy and the IDC (Intergalactic Data Commission) effort for efficient data organization. The workshop concludes with a general recap, supplementary exercises, and feedback and closing remarks, ensuring you leave with a comprehensive understanding and resources for continued success.\r\n\r\nThis training will be conducted in French, while the materials (slides) will be in English.\r\n\r\nRequirements\r\n\r\nPrior knowledge and experience using Galaxy\r\nPrior knowledge and experience using command line\r\nFluent in French (materials will be in English and discussions will happen in French)\r\nYour own computer\r\nOptional but encouraged: your own workflow and dataset for the Bring Your Own Work (BYOW) session. The workflow and the dataset must be shareable and non-sensitive (i.e., they must not contain any patient-related information or confidential data). 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To fully benefit from these advances, researchers need both a solid understanding of AI/ML methods and awareness of their limitations, best practices, and regulatory frameworks.\r\n\r\nThis five-day, hands-on training course will guide participants from the foundations of machine learning through deep learning, foundation models, and generative AI, while also covering reproducibility, the DOME recommendations, and the EU AI Act.\r\n\r\nBuilding on the success of the first edition, this second ELIXIR Summer School on Artificial Intelligence and Machine Learning in Life Sciences will bring together AI/ML experts from five ELIXIR Nodes and 25 participants from across the ELIXIR community, fostering knowledge exchange, collaboration, and the responsible adoption of AI in life sciences.", "homepage": "https://courses.crg.eu/events/artificial-intelligence-and-machine-learning-life-science-foundations-applications-2026", "is_draft": false, "costs": [ "300€ for academics, 600€ for industry" ], "topics": [ "http://edamontology.org/topic_3474" ], "keywords": [ "Artificial Intelligence", "Machine learning" ], "prerequisites": [ "basic statistics", "Intermediate Python programming", "Data analysis" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 25, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/810/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/869/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1-300x226.png", "updated_at": "2026-07-06T08:01:45.817013Z", "type": "Training course", "start_date": "2026-09-14", "end_date": "2026-09-18", "venue": "Centre for Genomic Regulation (CRG)", "city": "Barcelona", "country": "Spain", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2026-06-23", "registration_closing": "2026-07-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 724, "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - December 14-16 2025", "shortName": "Variant calling", "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. 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Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_2885", "http://edamontology.org/topic_0102" ], "keywords": [], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "hort-read alignment and small size variants calling (15/12/2025 - 16/12/2025)\r\nThe GenoToul bioinformatics platform, Sigenae and NED (GenPhySE) organize a series of training courses to familiarize yourself with the various resources it provides. These resources are currently: the hardware infrastructure, biological data banks and widely used bioinformatics softwares. This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\ncalendar\r\n \r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/88/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/31/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png", "updated_at": "2025-05-09T13:20:15.323810Z", "type": "Training course", "start_date": "2025-12-15", "end_date": "2025-12-16", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-05-09", "registration_closing": "2025-12-08", "registration_status": "closed", "courseMode": "Online" }, { "id": 678, "name": "Soumission de données et métadonnées à EMBL-EBI - 2024", "shortName": "FAIR Data EBI 2024", "description": "Processus et outils mis en place dans le cadre des projets AgroDiv et BReIF pour soumettre des données dans les archives EMBL-EBI associées à des descriptions riches des échantillons séquencés dans BioSamples.", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091" ], "keywords": [ "Données" ], "prerequisites": [ "none" ], "openTo": "Internal personnel", "accessConditions": "Consortium AgroDiv et BreIF", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-11-28T13:36:05.985672Z", "type": "Training course", "start_date": "2024-05-22", "end_date": "2024-05-22", "venue": "", "city": "", "country": "", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api" ], "trainingMaterials": [ { "id": 147, "name": "Data-brokering script", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Data-brokering%20script/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Online" }, { "id": 172, "name": "MicroScope Open Days", "shortName": "", "description": "Journées utilisateurs de la plateforme MicroScope.", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Mandatory", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2023-08-22T14:09:40.276325Z", "type": "Meeting", "start_date": "2018-05-14", "end_date": "2018-05-15", "venue": "", "city": "Institut Pasteur Paris", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Online" }, { "id": 635, "name": "Introduction To Python - session 16/10/2024 - 17/10/2024", "shortName": "Introduction To Python - session 16/10/2024 - 17/10/2024", "description": "The Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).\r\n\r\nThis training focuses on practice. It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).", "homepage": "https://bioinfo.genotoul.fr/index.php/events/python/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3307" ], "keywords": [ "Python Language" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-06-10T12:33:57.629350Z", "type": "Training course", "start_date": "2024-10-16", "end_date": "2024-10-17", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "trainingMaterials": [ { "id": 142, "name": "Introduction to python - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Introduction%20to%20python%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-05", "registration_closing": "2024-10-08", "registration_status": "closed", "courseMode": "Online" }, { "id": 612, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. 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Furthermore, since genetic studies relies on the integration and the linking between phenotype and genotype datasets, relevant section of MIAPPE are beginning to be used for genotyping standards.\r\nThis formation will cover a general introduction of the MIAPPE principles and some examples to illustrate different use cases on the usage of MIAPPE for plant phenotyping data standardization.", "homepage": "https://urgi.versailles.inrae.fr/About-us/News/Webinar-rep-pheno", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3298", "http://edamontology.org/topic_3572", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_0780" ], "keywords": [ "Données" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "Public", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 39, "name": "URGI - US1164", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-11-28T13:21:44.473980Z", "type": "Training course", "start_date": "2021-04-02", "end_date": "2021-04-02", "venue": "", "city": "", "country": "", "geographical_range": "International", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api" ], "trainingMaterials": [ { "id": 150, "name": "Plant Data Managment for Phenotyping Experiments - MIAPPE", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Plant%20Data%20Managment%20for%20Phenotyping%20Experiments%20-%20MIAPPE/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Online" }, { "id": 683, "name": "Graphiques sous R avec ggplot2 : 2025", "shortName": "Graphics with R-ggplot2 : 2025", "description": "Objectifs pédagogiques :\r\nÀ l’issue de la formation, les stagiaires connaîtront les principales fonctionnalités du package R « ggplot2 » et la démarche sous-jacente pour construire un graphique à partir d’un tableau de données. Ils seront capables de réaliser plusieurs types de représentations graphiques, telles que des nuages de points, des courbes, des histogrammes, des diagrammes en bâtons, des boxplots, des heatmaps, etc. Les stagiaires pourront apporter leur propre tableau de données et pratiquer dessus en fin de formation. \r\n\r\nProgramme :\r\n- Principes généraux liés au package ggplot2 \r\n- Principales fonctions graphiques pour réaliser des nuages de points, des histogrammes, des boxplots, etc. \r\n- Principales fonctions pour jouer sur les coloriages en fonction d’une variable, sur les échelles de couleurs, sur les graduations, sur les représentations multiples, etc.", "homepage": "https://migale.inrae.fr/trainings", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_2269" ], "keywords": [ "Représentations graphiques" ], "prerequisites": [ "Langage R de base" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:17:38.070402Z", "type": "Training course", "start_date": "2025-03-13", "end_date": "2025-03-13", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-01-22", "registration_closing": "2025-02-26", "registration_status": "closed", "courseMode": "Online" }, { "id": 663, "name": "Interactive Online Companionship - R formation Session 2025", "shortName": "IOC - R", "description": "InforBio offers online bioinformatics training tailored to the needs of research labs, with small group sessions to ensure personalized learning. Our program is designed to help you acquire key skills for independent data analysis.\r\n\r\nWe offer a comprehensive 6-month program, including a post-training feedback session to support practical application.\r\n\r\nTraining Program\r\nR Training (January to March 2025) – 10 sessions of 2.5 hours – €800\r\nThis course covers the basics of R: data organization and filtering, basic statistical analyses, and creating publication-ready graphics. The goal is to make you self-sufficient in using R for your own analyses.\r\n\r\n\r\nKey Highlights:\r\nSmall group sessions for interactive and personalized learning.\r\nTailored feedback on your own data to reinforce the learning process.\r\nLimited spots available, registration is now open.", "homepage": "https://inforbio.github.io/ioc_r_scrnaseq.html", "is_draft": false, "costs": [ "Priced", "800€ for Academics", "Private Sector : price on demand" ], "topics": [], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 8, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/809/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 18, "name": "IBiSA", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IBiSA/?format=api" }, { "id": 19, "name": "Sorbonne Université", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Sorbonne%20Universit%C3%A9/?format=api" } ], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://github.com/InforBio/InforBio.github.io/blob/main/images/logoInforBio_fond_blanc.png?raw=true", "updated_at": "2024-12-11T08:35:40.374521Z", "type": "Training course", "start_date": "2025-01-06", "end_date": "2025-03-31", "venue": "", "city": "Online", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-12-01", "registration_closing": null, "registration_status": "open", "courseMode": "Online" } ] }
