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            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
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            "name": "New session of Molecular Phylogeny - Level 1",
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            "name": "Pandas : gérer, analyser, visualiser vos données efficacement - Session 2025",
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            "name": "Short-Read Alignment And Small Size Variants Calling - session 9/10/2024 - 10/10/2024",
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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
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            "updated_at": "2024-06-10T12:36:32.603065Z",
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            "name": "NGS data analysis on the command line - session 4",
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            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
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            "openTo": "Everyone",
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            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-03-26T14:24:58.135354Z",
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            "id": 512,
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            "logo_url": "http://www.atgc-montpellier.fr/pictures/ATGClogo.svg",
            "updated_at": "2023-10-05T12:36:19.174965Z",
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            "id": 639,
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            "homepage": "https://pf-bird.univ-nantes.fr/training/linux/",
            "is_draft": false,
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            "topics": [
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                    "name": "BiRD",
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            "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg",
            "updated_at": "2024-08-22T15:57:15.730116Z",
            "type": "Training course",
            "start_date": "2024-09-30",
            "end_date": "2024-09-30",
            "venue": "",
            "city": "Nantes",
            "country": "",
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            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/",
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
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            "topics": [
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            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2023-05-17T10:04:05.719947Z",
            "type": "Training course",
            "start_date": "2023-04-17",
            "end_date": "2023-04-17",
            "venue": "",
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            "geographical_range": "",
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            "registration_closing": "2023-04-12",
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            "name": "Analyses Single Cell RNA-seq (ScRNA-seq) avec R",
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            "homepage": "https://cnrsformation.cnrs.fr/analyses-single-cell-rna-seq-scrna-seq-avec-r?axe=176",
            "is_draft": false,
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            "keywords": [
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                "R",
                "NGS Sequencing Data Analysis"
            ],
            "prerequisites": [
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                "R programming"
            ],
            "openTo": "Everyone",
            "accessConditions": "Maîtrise du langage R\r\nAvoir suivi le stage \"Langage R : introduction\" ou niveau équivalent.\r\nAfin de vérifier que votre maîtrise du langage R est suffisante pour pouvoir suivre ce stage, nous vous invitons à effectuer et à renvoyer le test téléchargeable\r\nhttps://cnrsformation.cnrs.fr/data/STG_23294_55153.docx",
            "maxParticipants": 12,
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            ],
            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:18.342890Z",
            "type": "Training course",
            "start_date": "2025-06-03",
            "end_date": "2025-06-04",
            "venue": "",
            "city": "Bordeaux",
            "country": "France",
            "geographical_range": "National",
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            "realisation_status": "future",
            "registration_opening": "2024-12-03",
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            "id": 649,
            "name": "Analyses NGS avec R",
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            "description": "Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.",
            "homepage": "https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
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                "R Language",
                "Gene expression differential analysis",
                "Data visualization"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
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            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:10.103074Z",
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            "end_date": "2025-05-16",
            "venue": "",
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            "country": "France",
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            "registration_opening": "2024-12-03",
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            "courseMode": "Onsite"
        },
        {
            "id": 652,
            "name": "Analyses NGS avec R",
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            "description": "Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.",
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                "Data visualization"
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                "Linux - Basic Knowledge"
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            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
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            "type": "Training course",
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            "end_date": "2025-09-26",
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            "country": "France",
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            "registration_opening": "2024-12-03",
            "registration_closing": "2025-09-19",
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        },
        {
            "id": 631,
            "name": "Using sed and awk to modify large large text files - session 03/10/2024",
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            "description": "This “Sed and AWK to modify large text files” training session is organized by the Genotoul bioinfo platform.\r\n\r\nThe Linux sed command is a powerful and very fast text editor without an interface. Sed can select, substitute, add, delete, and modify text in files and streams. Sed relies heavily on regular expressions for pattern matching and text selection. We’ll manipulate regexes and the sed command to modify and filter several type of file often used in bioinformatics.\r\n\r\nAWK enables to easily process columns in large text files but is also a quite powerfull programming language. This training session aims at introducing you AWK principles. You will learn about variables, operators and functions useful to manipulate very large files. \r\n\r\nFor example you can use AWK to generate your unix command lines to be launched on the cluster. AWK enables to process millions of lines in text files. The course includes short feature presentations between long hands-on sessions in which you will be able to understand the global ideas as well as details.",
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Programming Languages & Computer Sciences"
            ],
            "prerequisites": [
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-06-04T07:39:04.387849Z",
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            "start_date": "2024-10-03",
            "end_date": "2024-10-03",
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            "city": "castanet-tolosan",
            "country": "France",
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            ],
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        {
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            "name": "Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - édition Strasbourg - Session 1 (mars 2022)",
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            "description": "Cette formation, à destination de bioinformaticiens et biologistes, présente les principes FAIR de gestions de données dans un projet de bioinformatique ou de biologie.Elle aborde les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présente sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées pour gérer les données d’un projet de recherche.",
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            "openTo": "Everyone",
            "accessConditions": "This training is dedicated for academics in Strasbourg area",
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            ],
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